| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is yehY [H]
Identifier: 238027432
GI number: 238027432
Start: 2007308
End: 2008504
Strand: Direct
Name: yehY [H]
Synonym: bglu_1g18350
Alternate gene names: 238027432
Gene position: 2007308-2008504 (Clockwise)
Preceding gene: 238027431
Following gene: 238027433
Centisome position: 51.38
GC content: 76.78
Gene sequence:
>1197_bases ATGACGGGCCCCGCCGCGCGGCCGGCGCCTTCCGGCCAGCGCCGGCCGCGCGGCCATGTGGACCGCGTCGGCGTGCTGGT CGCGCTGGTCGCGTGCGGCGCGCTCGCGCTGCCCTTCGTCACGTTCCGCGCGAACCGGATCCTGCCGGGCCATGGCCTGA CGCTGCCCCACGTGTTCCCCGCCCCGCTGGCCGCGCTCGCGCTGGCCGGCTGGCTCGCGGCCGCCGGGTTCGCGCTCGCG CGCACGCCCCCCGGCTGGCGCGCCGTGGCGGGCACGGCGGCGCTGGTCTGGCTCGGCTACTGGCTCGGCGCGGCGCCCGC GCGGCTGGTCGGCGGTGCCATGCCGATCGCGCGCGTCTCGCCCGCGGCCGGCGCCTGGCTGCTGCTGTTCGCGTTCGCGG TGCTGATCGCCGACGCGCTGGCGCGGCTGGCGCTCGGCCCGCTCAAGCGCCTCGGCGTGCTGGCGGTGGCGCTCGCGGCG CTCGCCGCCGCGCTCGCGAGCGGGACATGGGACGGCCTGTCGGTGATGCAGGAATACGCCGTGCGCGCCGACGCGTTCTG GAGCGAGGCGGCCCGCCATCTGGCGCTGGTGGCCGGCTCGACGGGCGCCGCGTTCGCCGTGGCGCTGCCGCTGGGCATCG GCTGCGCGCACCGCCCGGCCTGGCGCGCGACGCTGCTGCCGGCGCTGAACGTGGTGCAGACCATCCCGAGCATCGCGCTG TTCGGCATCCTGATGGTGCCGCTCGGCCTGCTGGCGGCGCACCTGCCGCTCGCCGCGGCGCTCGGCATCGGCGGGATCGG CCCGGCGCCCGCCTTCGTCGCGCTGTTCCTGTACGCGCTGCTGCCGATCGTGTCGAGCGTGGTGGTGGGAATCGACGGCG TCGACGCGCGCGTGATCGAGGCCGCCGCCGCGATGGGCATGACGCCGCGCCAGCGCGTGCTCGGCGTGGAACTCGCGCTG GCGCTCCCGGTGATCCTCGCCGGGCTGCGCATCGTGCTGGTGCAGAACGTCGGCCTGACCGCGGTGGCCGCGCTGATCGG CGGCGGCGGCTTCGGCACCTTCATCTTCCAGGGGCTCGGGCAGGCCGCCACCGACCTCGTGCTGCTCGGCGCGCTGCCGA CCATCGCGCTCGCGTCGGTGCTGTCGGTGGTGTTCGACGCGGCCATCCAGTTCAGCCAACGGAGTGCTTCCCGATGA
Upstream 100 bases:
>100_bases ACCTCAAGACGCTGCAGACCCTCAACAGCCGCATCCAGATCAACGGCGAACCGGCCGCCCATGTCGCGGCCGACTACCTG AAGGCGAAGGGCTTCGTCAA
Downstream 100 bases:
>100_bases TCGAGATCGACCGCGTGACGCGTCGCTTCGGGCCGCTCGTGGCGGTCGACGACGTCTCGCTCGCCGTCGCGCCCGGCACC GTCACGGCGCTGGTGGGCGC
Product: ABC transporter permease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 398; Mature: 397
Protein sequence:
>398_residues MTGPAARPAPSGQRRPRGHVDRVGVLVALVACGALALPFVTFRANRILPGHGLTLPHVFPAPLAALALAGWLAAAGFALA RTPPGWRAVAGTAALVWLGYWLGAAPARLVGGAMPIARVSPAAGAWLLLFAFAVLIADALARLALGPLKRLGVLAVALAA LAAALASGTWDGLSVMQEYAVRADAFWSEAARHLALVAGSTGAAFAVALPLGIGCAHRPAWRATLLPALNVVQTIPSIAL FGILMVPLGLLAAHLPLAAALGIGGIGPAPAFVALFLYALLPIVSSVVVGIDGVDARVIEAAAAMGMTPRQRVLGVELAL ALPVILAGLRIVLVQNVGLTAVAALIGGGGFGTFIFQGLGQAATDLVLLGALPTIALASVLSVVFDAAIQFSQRSASR
Sequences:
>Translated_398_residues MTGPAARPAPSGQRRPRGHVDRVGVLVALVACGALALPFVTFRANRILPGHGLTLPHVFPAPLAALALAGWLAAAGFALA RTPPGWRAVAGTAALVWLGYWLGAAPARLVGGAMPIARVSPAAGAWLLLFAFAVLIADALARLALGPLKRLGVLAVALAA LAAALASGTWDGLSVMQEYAVRADAFWSEAARHLALVAGSTGAAFAVALPLGIGCAHRPAWRATLLPALNVVQTIPSIAL FGILMVPLGLLAAHLPLAAALGIGGIGPAPAFVALFLYALLPIVSSVVVGIDGVDARVIEAAAAMGMTPRQRVLGVELAL ALPVILAGLRIVLVQNVGLTAVAALIGGGGFGTFIFQGLGQAATDLVLLGALPTIALASVLSVVFDAAIQFSQRSASR >Mature_397_residues TGPAARPAPSGQRRPRGHVDRVGVLVALVACGALALPFVTFRANRILPGHGLTLPHVFPAPLAALALAGWLAAAGFALAR TPPGWRAVAGTAALVWLGYWLGAAPARLVGGAMPIARVSPAAGAWLLLFAFAVLIADALARLALGPLKRLGVLAVALAAL AAALASGTWDGLSVMQEYAVRADAFWSEAARHLALVAGSTGAAFAVALPLGIGCAHRPAWRATLLPALNVVQTIPSIALF GILMVPLGLLAAHLPLAAALGIGGIGPAPAFVALFLYALLPIVSSVVVGIDGVDARVIEAAAAMGMTPRQRVLGVELALA LPVILAGLRIVLVQNVGLTAVAALIGGGGFGTFIFQGLGQAATDLVLLGALPTIALASVLSVVFDAAIQFSQRSASR
Specific function: May be part of an ABC transporter complex involved in uptake of osmoprotectant molecules. Probably responsible for the translocation of the substrate across the membrane [H]
COG id: COG1174
COG function: function code E; ABC-type proline/glycine betaine transport systems, permease component
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transmembrane type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI1788451, Length=355, Percent_Identity=41.4084507042254, Blast_Score=222, Evalue=3e-59, Organism=Escherichia coli, GI1788449, Length=214, Percent_Identity=35.0467289719626, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI1789033, Length=212, Percent_Identity=31.1320754716981, Blast_Score=89, Evalue=4e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000515 [H]
Pfam domain/function: PF00528 BPD_transp_1 [H]
EC number: NA
Molecular weight: Translated: 40102; Mature: 39971
Theoretical pI: Translated: 11.96; Mature: 11.96
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGPAARPAPSGQRRPRGHVDRVGVLVALVACGALALPFVTFRANRILPGHGLTLPHVFP CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCH APLAALALAGWLAAAGFALARTPPGWRAVAGTAALVWLGYWLGAAPARLVGGAMPIARVS HHHHHHHHHHHHHHHCHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHCC PAAGAWLLLFAFAVLIADALARLALGPLKRLGVLAVALAALAAALASGTWDGLSVMQEYA CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH VRADAFWSEAARHLALVAGSTGAAFAVALPLGIGCAHRPAWRATLLPALNVVQTIPSIAL HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH FGILMVPLGLLAAHLPLAAALGIGGIGPAPAFVALFLYALLPIVSSVVVGIDGVDARVIE HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH AAAAMGMTPRQRVLGVELALALPVILAGLRIVLVQNVGLTAVAALIGGGGFGTFIFQGLG HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHH QAATDLVLLGALPTIALASVLSVVFDAAIQFSQRSASR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure TGPAARPAPSGQRRPRGHVDRVGVLVALVACGALALPFVTFRANRILPGHGLTLPHVFP CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCH APLAALALAGWLAAAGFALARTPPGWRAVAGTAALVWLGYWLGAAPARLVGGAMPIARVS HHHHHHHHHHHHHHHCHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHCC PAAGAWLLLFAFAVLIADALARLALGPLKRLGVLAVALAALAAALASGTWDGLSVMQEYA CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH VRADAFWSEAARHLALVAGSTGAAFAVALPLGIGCAHRPAWRATLLPALNVVQTIPSIAL HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH FGILMVPLGLLAAHLPLAAALGIGGIGPAPAFVALFLYALLPIVSSVVVGIDGVDARVIE HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH AAAAMGMTPRQRVLGVELALALPVILAGLRIVLVQNVGLTAVAALIGGGGFGTFIFQGLG HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHH QAATDLVLLGALPTIALASVLSVVFDAAIQFSQRSASR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]