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The map label for this gene is yybE [H]

Identifier: 238027411

GI number: 238027411

Start: 1985879

End: 1986802

Strand: Reverse

Name: yybE [H]

Synonym: bglu_1g18070

Alternate gene names: 238027411

Gene position: 1986802-1985879 (Counterclockwise)

Preceding gene: 238027415

Following gene: 238027410

Centisome position: 50.86

GC content: 76.62

Gene sequence:

>924_bases
ATGGACCTGAACCTGCGCGAGCTTCGCGCGTTCGTCACCGTCGCGCAGGCCGGCAACTTCACGCGCGCGGCCGCGCGCCT
GCATCTCTCGCAGCCGGCGCTGACGGTGCAGATCCGGCGCCTCGAGCAGACCGTGGGCGCGCGCCTGTTCGACCGCAACA
GCCGCAGCGTGGCGCTCACGCAGACCGGCCGCGAGCTGCTGCCGCTGCTGCAGCGCTCGCTCGACGACATGGAGCGCGTG
CTGCGCGATGCGCGCGCGTTCGGCGACGGCACCGCCGGCACGGTGCGGCTGGCCTGCCTGCCGACCTTCGCGGCCAGCGT
GCTGCCCGACCTGATCCGCGAGTTCCGGCGGCGGGTGCCGCAGGCGCGCTTCGAGATTCGCGACGTGGTGGCAAGCGCGG
TGGACGCGCTGGTGCGCGGCGAGGAGGTCGATCTCGGGCTGACGGGCGGCGAGCGCGTGGACCCGGCGCTGGAGGTGCTG
CACGCGGGCGCGGACCGGCTGGTGGTGGTGTGCCCGCGCGGGCATCGGCTCGCGCGGCGGCGCCGCGTGACGGCCGCCGA
CCTGCTGGCACAGCCGCTGGTGCTGACCGCGCGCGGCACCAGCGTGCGCGCGGTGGTCGACACGGCGCTCGCGGCCGCGG
CCGGGGCCGGTCCCATGCCCGAGCTGGCCTGCGAGCCGACCTGCATGATGACGGCGGTGGCGATGGTGCGCGGCGGGCTC
GGCGTGACGATCCTGCCGGCCTCGGCACGCGAGGTGCTGGCCGAGCCCGAACTGGTGGCGCGGCCGATTGCCGAGGCGGG
CTTCGTGCGGCCCGTCGCGCTCGTGAAGCGGCGCGGCCGCACGCTGCCGCGCATCGCCGAGGCATTCGCGGCGGCGCTCG
TCGCGCACGGGTTGCACGGCGCGGTGCAACCGCCGCCGCCCTGA

Upstream 100 bases:

>100_bases
CCGGTCTTGTGTTTCGATGAGGGCGAGCGTAGTTTCGCCACCGCGATAACACAATTGAAATGATTTGATCGCAGCAATCA
CGCTTCGTTATGGATGAGAC

Downstream 100 bases:

>100_bases
TGGAAAGCGACGGCCGCGCGTGCGCAAAGACGCGCGCCGGGCGGCAGCGAAAGGCGCCGAGTGCAACGGTGCAACCGATT
GTTCAGTTGACTAGGTATCT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
MDLNLRELRAFVTVAQAGNFTRAAARLHLSQPALTVQIRRLEQTVGARLFDRNSRSVALTQTGRELLPLLQRSLDDMERV
LRDARAFGDGTAGTVRLACLPTFAASVLPDLIREFRRRVPQARFEIRDVVASAVDALVRGEEVDLGLTGGERVDPALEVL
HAGADRLVVVCPRGHRLARRRRVTAADLLAQPLVLTARGTSVRAVVDTALAAAAGAGPMPELACEPTCMMTAVAMVRGGL
GVTILPASAREVLAEPELVARPIAEAGFVRPVALVKRRGRTLPRIAEAFAAALVAHGLHGAVQPPPP

Sequences:

>Translated_307_residues
MDLNLRELRAFVTVAQAGNFTRAAARLHLSQPALTVQIRRLEQTVGARLFDRNSRSVALTQTGRELLPLLQRSLDDMERV
LRDARAFGDGTAGTVRLACLPTFAASVLPDLIREFRRRVPQARFEIRDVVASAVDALVRGEEVDLGLTGGERVDPALEVL
HAGADRLVVVCPRGHRLARRRRVTAADLLAQPLVLTARGTSVRAVVDTALAAAAGAGPMPELACEPTCMMTAVAMVRGGL
GVTILPASAREVLAEPELVARPIAEAGFVRPVALVKRRGRTLPRIAEAFAAALVAHGLHGAVQPPPP
>Mature_307_residues
MDLNLRELRAFVTVAQAGNFTRAAARLHLSQPALTVQIRRLEQTVGARLFDRNSRSVALTQTGRELLPLLQRSLDDMERV
LRDARAFGDGTAGTVRLACLPTFAASVLPDLIREFRRRVPQARFEIRDVVASAVDALVRGEEVDLGLTGGERVDPALEVL
HAGADRLVVVCPRGHRLARRRRVTAADLLAQPLVLTARGTSVRAVVDTALAAAAGAGPMPELACEPTCMMTAVAMVRGGL
GVTILPASAREVLAEPELVARPIAEAGFVRPVALVKRRGRTLPRIAEAFAAALVAHGLHGAVQPPPP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788748, Length=296, Percent_Identity=33.1081081081081, Blast_Score=124, Evalue=9e-30,
Organism=Escherichia coli, GI145693105, Length=294, Percent_Identity=26.1904761904762, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1788887, Length=296, Percent_Identity=33.1081081081081, Blast_Score=117, Evalue=7e-28,
Organism=Escherichia coli, GI157672245, Length=243, Percent_Identity=30.0411522633745, Blast_Score=117, Evalue=9e-28,
Organism=Escherichia coli, GI1787879, Length=278, Percent_Identity=33.8129496402878, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI1789204, Length=303, Percent_Identity=29.042904290429, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI87081904, Length=280, Percent_Identity=30.3571428571429, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1790399, Length=303, Percent_Identity=27.0627062706271, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI2367136, Length=263, Percent_Identity=29.277566539924, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI1788481, Length=296, Percent_Identity=31.0810810810811, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1788296, Length=244, Percent_Identity=27.8688524590164, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1787530, Length=270, Percent_Identity=27.4074074074074, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1787806, Length=293, Percent_Identity=26.962457337884, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787589, Length=145, Percent_Identity=35.8620689655172, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1790208, Length=263, Percent_Identity=28.8973384030418, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI87082132, Length=169, Percent_Identity=29.585798816568, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1789639, Length=141, Percent_Identity=27.6595744680851, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786713, Length=276, Percent_Identity=26.4492753623188, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787601, Length=142, Percent_Identity=29.5774647887324, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787128, Length=145, Percent_Identity=31.0344827586207, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1786448, Length=270, Percent_Identity=28.5185185185185, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1790262, Length=294, Percent_Identity=25.1700680272109, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1789173, Length=167, Percent_Identity=29.940119760479, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32821; Mature: 32821

Theoretical pI: Translated: 11.56; Mature: 11.56

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLNLRELRAFVTVAQAGNFTRAAARLHLSQPALTVQIRRLEQTVGARLFDRNSRSVALT
CCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEE
QTGRELLPLLQRSLDDMERVLRDARAFGDGTAGTVRLACLPTFAASVLPDLIREFRRRVP
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCC
QARFEIRDVVASAVDALVRGEEVDLGLTGGERVDPALEVLHAGADRLVVVCPRGHRLARR
HHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHCCCCCEEEECCCCHHHHHH
RRVTAADLLAQPLVLTARGTSVRAVVDTALAAAAGAGPMPELACEPTCMMTAVAMVRGGL
HHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCC
GVTILPASAREVLAEPELVARPIAEAGFVRPVALVKRRGRTLPRIAEAFAAALVAHGLHG
CEEEECCCHHHHHCCCHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC
AVQPPPP
CCCCCCC
>Mature Secondary Structure
MDLNLRELRAFVTVAQAGNFTRAAARLHLSQPALTVQIRRLEQTVGARLFDRNSRSVALT
CCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEE
QTGRELLPLLQRSLDDMERVLRDARAFGDGTAGTVRLACLPTFAASVLPDLIREFRRRVP
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCC
QARFEIRDVVASAVDALVRGEEVDLGLTGGERVDPALEVLHAGADRLVVVCPRGHRLARR
HHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHCCCCCEEEECCCCHHHHHH
RRVTAADLLAQPLVLTARGTSVRAVVDTALAAAAGAGPMPELACEPTCMMTAVAMVRGGL
HHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCC
GVTILPASAREVLAEPELVARPIAEAGFVRPVALVKRRGRTLPRIAEAFAAALVAHGLHG
CEEEECCCHHHHHCCCHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC
AVQPPPP
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]