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The map label for this gene is araH [H]

Identifier: 238027385

GI number: 238027385

Start: 1955824

End: 1956834

Strand: Reverse

Name: araH [H]

Synonym: bglu_1g17810

Alternate gene names: 238027385

Gene position: 1956834-1955824 (Counterclockwise)

Preceding gene: 238027386

Following gene: 238027383

Centisome position: 50.09

GC content: 67.95

Gene sequence:

>1011_bases
ATGAATCAAGCCATGCAGCCAAAGGGTACGCCCTCCGCCAACGAGGCCGCCGCGCCGATCACGCCCGCGCGTGCGCGGGC
GTGGGACATGATCAACAAGTCGGGCATCGTGGTGGTGTTCGTGGTGCTGTTCGCCGTGCTCTCGGCGACCGTGCCCGACT
TCCTCACGACCCGCAACATCCAGGGCCTGCTGCTGTCGGTCACGCTGATCGGCTCGATCGCCGTGACCATGATGTTCGTG
CTCGCGCTCGGCGAGGTGGACCTCTCGGTGGCCTCGATCGTCGCGTTCTCGGGCGTGGTGGCCTCCACCGTGATCACCGC
CTCGCACAGCGTGCTGCTCGGCGTGGCCGCCGGCGTGCTGGCGGGCGGCGCCGTGGGCCTCGTCAACGGCGTGCTGATCG
CGCGGTTCCGCATCAACTCGCTGATCGCCACGCTGGCCATGATGGAGGCGGTGCGCGGGCTCGCGTTCCTGACCTCGAAC
GGCGACGCGGTGATGATCTCCGAGGAGCGCTTCTTCGACCTCGGCAGCGGCTCGTTCCTCGGCATCTCGTTCCCGATCTG
GAGCAACATCGTCGGCTTCGTGGTGTTCGGCTTCCTGCTCAAGAAGACCGTGTTCGGCAAGAACGTGCTGGCCGTGGGCG
GCAACAGCGAGGCCGCGCTGCTCGCGGGGCTGTCGGTCACGCGCATCAAGATCACGGTGTTCGTGCTGCAGGGGCTCGTC
ACGGGCTTCGCCGGCGTGATGCTGGCCTCGCGCATGAGCCTCGGCGATCCGAAGACCTCGGTGGGGCTGGAACTGGGCGT
GATTTCGGCCTGCGTGCTCGGCGGCGTGTCGCTGACGGGCGGCGTGGCCACCATCGCCGGCGTGCTGGTGGGCGTGCTGA
TCATGGGCGCCGTGCAGGACGCGATGAGCCTCGTGAACGTGCCGACCTTCTACCAGTACCTGATTCGCGGCGGCATCCTG
CTGCTGGCCGTGCTGTTCGACCAGTTCCGGCGCAGCAAGCGGGCCGTGTGA

Upstream 100 bases:

>100_bases
CGCCCGACGAACTGATCAAGCTCGCGCTGCCGCGCTGAGCCAACCACTGCGGCGCGCCTGCGAGCTTCGCGGCGCGCCGT
TTCGAAACGATGGACCGGAA

Downstream 100 bases:

>100_bases
ACGCGAGGCCGGCCTGGCCGGCCCGCGTGTGAAGAGGATGACAAGGGCCACCCGATCGGCCCTTGTCGTTGCCGGCGGCT
TCGCGTGGGCCGGCCGAACA

Product: L-arabinose transporter permease protein

Products: ADP; phosphate; arabinose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 336; Mature: 336

Protein sequence:

>336_residues
MNQAMQPKGTPSANEAAAPITPARARAWDMINKSGIVVVFVVLFAVLSATVPDFLTTRNIQGLLLSVTLIGSIAVTMMFV
LALGEVDLSVASIVAFSGVVASTVITASHSVLLGVAAGVLAGGAVGLVNGVLIARFRINSLIATLAMMEAVRGLAFLTSN
GDAVMISEERFFDLGSGSFLGISFPIWSNIVGFVVFGFLLKKTVFGKNVLAVGGNSEAALLAGLSVTRIKITVFVLQGLV
TGFAGVMLASRMSLGDPKTSVGLELGVISACVLGGVSLTGGVATIAGVLVGVLIMGAVQDAMSLVNVPTFYQYLIRGGIL
LLAVLFDQFRRSKRAV

Sequences:

>Translated_336_residues
MNQAMQPKGTPSANEAAAPITPARARAWDMINKSGIVVVFVVLFAVLSATVPDFLTTRNIQGLLLSVTLIGSIAVTMMFV
LALGEVDLSVASIVAFSGVVASTVITASHSVLLGVAAGVLAGGAVGLVNGVLIARFRINSLIATLAMMEAVRGLAFLTSN
GDAVMISEERFFDLGSGSFLGISFPIWSNIVGFVVFGFLLKKTVFGKNVLAVGGNSEAALLAGLSVTRIKITVFVLQGLV
TGFAGVMLASRMSLGDPKTSVGLELGVISACVLGGVSLTGGVATIAGVLVGVLIMGAVQDAMSLVNVPTFYQYLIRGGIL
LLAVLFDQFRRSKRAV
>Mature_336_residues
MNQAMQPKGTPSANEAAAPITPARARAWDMINKSGIVVVFVVLFAVLSATVPDFLTTRNIQGLLLSVTLIGSIAVTMMFV
LALGEVDLSVASIVAFSGVVASTVITASHSVLLGVAAGVLAGGAVGLVNGVLIARFRINSLIATLAMMEAVRGLAFLTSN
GDAVMISEERFFDLGSGSFLGISFPIWSNIVGFVVFGFLLKKTVFGKNVLAVGGNSEAALLAGLSVTRIKITVFVLQGLV
TGFAGVMLASRMSLGDPKTSVGLELGVISACVLGGVSLTGGVATIAGVLVGVLIMGAVQDAMSLVNVPTFYQYLIRGGIL
LLAVLFDQFRRSKRAV

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI145693152, Length=312, Percent_Identity=51.9230769230769, Blast_Score=295, Evalue=3e-81,
Organism=Escherichia coli, GI1790191, Length=310, Percent_Identity=36.1290322580645, Blast_Score=169, Evalue=2e-43,
Organism=Escherichia coli, GI1788896, Length=307, Percent_Identity=35.1791530944625, Blast_Score=167, Evalue=1e-42,
Organism=Escherichia coli, GI1789992, Length=136, Percent_Identity=44.8529411764706, Blast_Score=131, Evalue=6e-32,
Organism=Escherichia coli, GI1790524, Length=321, Percent_Identity=29.2834890965732, Blast_Score=125, Evalue=4e-30,
Organism=Escherichia coli, GI87082395, Length=293, Percent_Identity=33.7883959044369, Blast_Score=108, Evalue=7e-25,
Organism=Escherichia coli, GI1787793, Length=292, Percent_Identity=29.1095890410959, Blast_Score=104, Evalue=8e-24,
Organism=Escherichia coli, GI145693214, Length=237, Percent_Identity=32.9113924050633, Blast_Score=88, Evalue=9e-19,
Organism=Escherichia coli, GI1788471, Length=325, Percent_Identity=30.4615384615385, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1787794, Length=264, Percent_Identity=27.2727272727273, Blast_Score=71, Evalue=8e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34611; Mature: 34611

Theoretical pI: Translated: 10.46; Mature: 10.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQAMQPKGTPSANEAAAPITPARARAWDMINKSGIVVVFVVLFAVLSATVPDFLTTRNI
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCHHHHHHCCH
QGLLLSVTLIGSIAVTMMFVLALGEVDLSVASIVAFSGVVASTVITASHSVLLGVAAGVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGGAVGLVNGVLIARFRINSLIATLAMMEAVRGLAFLTSNGDAVMISEERFFDLGSGSFL
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEEEHHHHEECCCCCEE
GISFPIWSNIVGFVVFGFLLKKTVFGKNVLAVGGNSEAALLAGLSVTRIKITVFVLQGLV
EEECCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHCCCCHHHHHHHHHHHHHHH
TGFAGVMLASRMSLGDPKTSVGLELGVISACVLGGVSLTGGVATIAGVLVGVLIMGAVQD
HHHHHHHHHHHHCCCCCCHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
AMSLVNVPTFYQYLIRGGILLLAVLFDQFRRSKRAV
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNQAMQPKGTPSANEAAAPITPARARAWDMINKSGIVVVFVVLFAVLSATVPDFLTTRNI
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCHHHHHHCCH
QGLLLSVTLIGSIAVTMMFVLALGEVDLSVASIVAFSGVVASTVITASHSVLLGVAAGVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGGAVGLVNGVLIARFRINSLIATLAMMEAVRGLAFLTSNGDAVMISEERFFDLGSGSFL
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEEEHHHHEECCCCCEE
GISFPIWSNIVGFVVFGFLLKKTVFGKNVLAVGGNSEAALLAGLSVTRIKITVFVLQGLV
EEECCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHCCCCHHHHHHHHHHHHHHH
TGFAGVMLASRMSLGDPKTSVGLELGVISACVLGGVSLTGGVATIAGVLVGVLIMGAVQD
HHHHHHHHHHHHCCCCCCHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
AMSLVNVPTFYQYLIRGGILLLAVLFDQFRRSKRAV
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; arabinose [Periplasm]; H2O [C]

Specific reaction: ATP + arabinose [Periplasm] + H2O = ADP + phosphate + arabinose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2445996; 9097040; 9278503; 8045430 [H]