Click here to switch to the map view.

The map label for this gene is ompW [C]

Identifier: 238027219

GI number: 238027219

Start: 1757484

End: 1758125

Strand: Direct

Name: ompW [C]

Synonym: bglu_1g16050

Alternate gene names: 238027219

Gene position: 1757484-1758125 (Clockwise)

Preceding gene: 238027218

Following gene: 238027222

Centisome position: 44.99

GC content: 61.99

Gene sequence:

>642_bases
ATGAAAGAAAAAATTCGCTGTCTGGTTTCAGCCATTGCCGCTACCGCAAGCTTCGCGATGATCCCATCGGTTTCACATGC
CGCATCGCCAGGCGACGGCATTGCCGCGGGTGACTTCCTCGCGCGCCTGCGCGCGATCGAAATCGCTCCCGCGGATCGCG
GCAGCGGCACGCTGTCGGCGATCCAGGCCGGTGTGAACAATGCCATCGTCCCCGAGCTCGATTTCACCTACATGATCCGC
GACTATCTCGGCGTCGAGTTGATCCTCGGTACGTCGCGGCATCAGGTCAATTCGAGCCTCGGTCATCTCGGCGGCGTGAA
CGTGCTGCCGCCCACGCTGCTGCTGCAGTACCACTTCAACCACGCGGGCAAGGTCCGGCCGTATATCGGCGCGGGCCTGA
ACTACACGTATTTCTACAACGACGGCCTCAACGTCGGAGGCGAGGGCGTCGCGGTCCACCGGAGCAGCTTCGGGCCGGCC
CTGCAATTCGGCGTCGACGTTCAGGTCACGAAGCGCTTCTTCGTGAACGTCGACCTGAAGAAAATCTGGATGCATACCGA
CGCGACGCTCGGCGGCCAGCCGATCGGGCGCCTTCACCTCGATCCGATCATTGTCGGCTTGGGCGTGGGTATGAAGTTCT
GA

Upstream 100 bases:

>100_bases
CTGCGACAAACCGCCCCATGTTCTCTCTGGCTTGATGAGCATCAACTTGACGCGCTCGCCGGCCCCTGACAATCACTACC
GTTCCAAGGGGGTTATTGCC

Downstream 100 bases:

>100_bases
CGAACCGGTAACAAGTGTTGGGGTTGGGCGGCACGGCTGTCTCGCGTGCCGCCTTTTTTCGTCCCGCGGTCCAGGCATGA
GGCGGCGCTCGGTGCGCTCC

Product: OmpW family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 213; Mature: 213

Protein sequence:

>213_residues
MKEKIRCLVSAIAATASFAMIPSVSHAASPGDGIAAGDFLARLRAIEIAPADRGSGTLSAIQAGVNNAIVPELDFTYMIR
DYLGVELILGTSRHQVNSSLGHLGGVNVLPPTLLLQYHFNHAGKVRPYIGAGLNYTYFYNDGLNVGGEGVAVHRSSFGPA
LQFGVDVQVTKRFFVNVDLKKIWMHTDATLGGQPIGRLHLDPIIVGLGVGMKF

Sequences:

>Translated_213_residues
MKEKIRCLVSAIAATASFAMIPSVSHAASPGDGIAAGDFLARLRAIEIAPADRGSGTLSAIQAGVNNAIVPELDFTYMIR
DYLGVELILGTSRHQVNSSLGHLGGVNVLPPTLLLQYHFNHAGKVRPYIGAGLNYTYFYNDGLNVGGEGVAVHRSSFGPA
LQFGVDVQVTKRFFVNVDLKKIWMHTDATLGGQPIGRLHLDPIIVGLGVGMKF
>Mature_213_residues
MKEKIRCLVSAIAATASFAMIPSVSHAASPGDGIAAGDFLARLRAIEIAPADRGSGTLSAIQAGVNNAIVPELDFTYMIR
DYLGVELILGTSRHQVNSSLGHLGGVNVLPPTLLLQYHFNHAGKVRPYIGAGLNYTYFYNDGLNVGGEGVAVHRSSFGPA
LQFGVDVQVTKRFFVNVDLKKIWMHTDATLGGQPIGRLHLDPIIVGLGVGMKF

Specific function: Acts As A Receptor For Colicin S4. [C]

COG id: COG3047

COG function: function code M; Outer membrane protein W

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OmpW/AlkL family [H]

Homologues:

Organism=Escherichia coli, GI1787510, Length=189, Percent_Identity=34.3915343915344, Blast_Score=101, Evalue=3e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR005618 [H]

Pfam domain/function: PF03922 OmpW [H]

EC number: NA

Molecular weight: Translated: 22699; Mature: 22699

Theoretical pI: Translated: 8.97; Mature: 8.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEKIRCLVSAIAATASFAMIPSVSHAASPGDGIAAGDFLARLRAIEIAPADRGSGTLSA
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHEEECCCCCCCCHHHH
IQAGVNNAIVPELDFTYMIRDYLGVELILGTSRHQVNSSLGHLGGVNVLPPTLLLQYHFN
HHHCCCCCCCCCCCHHHHHHHHCCEEEEECCCHHHHHHHHHCCCCCCCCCHHEEEEEECC
HAGKVRPYIGAGLNYTYFYNDGLNVGGEGVAVHRSSFGPALQFGVDVQVTKRFFVNVDLK
CCCCCCCEECCCCEEEEEECCCCCCCCCEEEEEECCCCCEEEECCCEEEEEEEEEECCHH
KIWMHTDATLGGQPIGRLHLDPIIVGLGVGMKF
HEEEECCCCCCCCCCCEEECCEEEEEECCCCCC
>Mature Secondary Structure
MKEKIRCLVSAIAATASFAMIPSVSHAASPGDGIAAGDFLARLRAIEIAPADRGSGTLSA
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHEEECCCCCCCCHHHH
IQAGVNNAIVPELDFTYMIRDYLGVELILGTSRHQVNSSLGHLGGVNVLPPTLLLQYHFN
HHHCCCCCCCCCCCHHHHHHHHCCEEEEECCCHHHHHHHHHCCCCCCCCCHHEEEEEECC
HAGKVRPYIGAGLNYTYFYNDGLNVGGEGVAVHRSSFGPALQFGVDVQVTKRFFVNVDLK
CCCCCCCEECCCCEEEEEECCCCCCCCCEEEEEECCCCCEEEECCCEEEEEEEEEECCHH
KIWMHTDATLGGQPIGRLHLDPIIVGLGVGMKF
HEEEECCCCCCCCCCCEEECCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]