| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is smaIM [H]
Identifier: 238027159
GI number: 238027159
Start: 1701361
End: 1702428
Strand: Direct
Name: smaIM [H]
Synonym: bglu_1g15450
Alternate gene names: 238027159
Gene position: 1701361-1702428 (Clockwise)
Preceding gene: 238027157
Following gene: 238027160
Centisome position: 43.55
GC content: 65.36
Gene sequence:
>1068_bases ATGACCTGGCTCGACCGTTCCCACCTTGGCGACTGCCGCGACCTGATGCGCACCATGATCGCCGACGGCGTGCGCGTGCA GACGATCGTCACCAGCCCACCGTATTGGGGTCTGCGCTCGTATCTGCCCGATGGCCACCCCGACAAGGCGCGCGAGATCG GCCAGGAGCCGACTCTGCGCGAGTTCATCGACACGCTCGTCGAGGTGTTCAGCCTCGCGCGCCAGCTGCTGGCCGACGAC GGCACGGCCTGGATCAACATGGGCGACAGCTATGCAGCGAATCGCTCCTATCAAGTTGCGTCCACGCTGATGAATGGCGA CGCGACAAATCAAGCTCAGGCGGCCGGTGGGCGCGGAATGAAAGTGCCTGATGGCCTGAAGCCAAAGGATCTAGTCGGCC AGCCGTGGCGCCTCGCCTTCGCGCTTCAGGACGCCGGCTGGTATCTCCGGCAGGACATCATTTGGGCGAAGCCCAACCCG ATGCCAGAGAGCGTGCGCGACCGTTGCACGAAGGCGCATGAGTACCTGTTCCTGCTCAGCAAGAGCGAGCGGTACTACTT CGACCATCAGGCGATGCGCGAGCCGCGCACTCAGGACGAGGACAGCAGCGTTTTTCGGGGTGGATGCTACGTCGGTGGGG CAGACGATAACGCAGTGCTTGGTAAGCGCCGCGTTCCCGGCAACAAGTCACACAAGGGCACGACCGCGTCGGCCAATGAC GAGAAGCATCGTACAAAGGCTGGGCTCGTCGACTACGCGCAGCGGGAGCGCGACGCAGACCCCGGCGACCTTGGCACTCG AAATAGGCGCAGCGTCTGGACCATCGCCACGCAGCCCTACGCGGCCGCCCATTTCGCCACTTTCCCCGAGGCGCTCGTCG AGCCCTGCGTGCTCGCTGGCAGCCGTCCGGGCGACGTCGTCTTCGATCCGTTCTTCGGCAGTGGCACCGTCGGCCAGGTC GCACAGCGGCTCGGCCGGCGCTTTCTCGGCTGCGAACTCAATCCCGACTACGAGCCGCTGCAGCGCGATCGCCTGCGGCA GCCCGGCCTGATGTTGGAGGCCTCATGA
Upstream 100 bases:
>100_bases ATGTCCATATCGCTCCCCGAGTTGATCATATTTGTACGCACGCGCCATTCGTTCATCTTAGCGCATATGCCTTGATCTAC CGATCGGTTTGCGTGTCCAA
Downstream 100 bases:
>100_bases GCCTCATCATCGCCCCGATCTCGTTCGACGAGGCCAATGCCTTCGTCGCGACGCATCACCGGCACCACGCACCTGCGGTC GGCCACAAGTTCAGCATCGC
Product: DNA modification methylase
Products: NA
Alternate protein names: M.SmaI; N-4 cytosine-specific methyltransferase SmaI [H]
Number of amino acids: Translated: 355; Mature: 354
Protein sequence:
>355_residues MTWLDRSHLGDCRDLMRTMIADGVRVQTIVTSPPYWGLRSYLPDGHPDKAREIGQEPTLREFIDTLVEVFSLARQLLADD GTAWINMGDSYAANRSYQVASTLMNGDATNQAQAAGGRGMKVPDGLKPKDLVGQPWRLAFALQDAGWYLRQDIIWAKPNP MPESVRDRCTKAHEYLFLLSKSERYYFDHQAMREPRTQDEDSSVFRGGCYVGGADDNAVLGKRRVPGNKSHKGTTASAND EKHRTKAGLVDYAQRERDADPGDLGTRNRRSVWTIATQPYAAAHFATFPEALVEPCVLAGSRPGDVVFDPFFGSGTVGQV AQRLGRRFLGCELNPDYEPLQRDRLRQPGLMLEAS
Sequences:
>Translated_355_residues MTWLDRSHLGDCRDLMRTMIADGVRVQTIVTSPPYWGLRSYLPDGHPDKAREIGQEPTLREFIDTLVEVFSLARQLLADD GTAWINMGDSYAANRSYQVASTLMNGDATNQAQAAGGRGMKVPDGLKPKDLVGQPWRLAFALQDAGWYLRQDIIWAKPNP MPESVRDRCTKAHEYLFLLSKSERYYFDHQAMREPRTQDEDSSVFRGGCYVGGADDNAVLGKRRVPGNKSHKGTTASAND EKHRTKAGLVDYAQRERDADPGDLGTRNRRSVWTIATQPYAAAHFATFPEALVEPCVLAGSRPGDVVFDPFFGSGTVGQV AQRLGRRFLGCELNPDYEPLQRDRLRQPGLMLEAS >Mature_354_residues TWLDRSHLGDCRDLMRTMIADGVRVQTIVTSPPYWGLRSYLPDGHPDKAREIGQEPTLREFIDTLVEVFSLARQLLADDG TAWINMGDSYAANRSYQVASTLMNGDATNQAQAAGGRGMKVPDGLKPKDLVGQPWRLAFALQDAGWYLRQDIIWAKPNPM PESVRDRCTKAHEYLFLLSKSERYYFDHQAMREPRTQDEDSSVFRGGCYVGGADDNAVLGKRRVPGNKSHKGTTASANDE KHRTKAGLVDYAQRERDADPGDLGTRNRRSVWTIATQPYAAAHFATFPEALVEPCVLAGSRPGDVVFDPFFGSGTVGQVA QRLGRRFLGCELNPDYEPLQRDRLRQPGLMLEAS
Specific function: This methylase recognizes the double-stranded sequence CCCGGG, causes specific methylation on C-2 on both strands, and protects the DNA from cleavage by the SmaI endonuclease [H]
COG id: COG0863
COG function: function code L; DNA modification methylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N(4)/N(6)-methyltransferase family. N(4) subfamily [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002941 - InterPro: IPR017985 - InterPro: IPR001091 [H]
Pfam domain/function: PF01555 N6_N4_Mtase [H]
EC number: =2.1.1.113 [H]
Molecular weight: Translated: 39595; Mature: 39464
Theoretical pI: Translated: 7.16; Mature: 7.16
Prosite motif: PS00093 N4_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTWLDRSHLGDCRDLMRTMIADGVRVQTIVTSPPYWGLRSYLPDGHPDKAREIGQEPTLR CCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHCCCCCCHHHHHCCCCCCHH EFIDTLVEVFSLARQLLADDGTAWINMGDSYAANRSYQVASTLMNGDATNQAQAAGGRGM HHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHCCCCHHHHHHHHCCCCCCHHHHCCCCCC KVPDGLKPKDLVGQPWRLAFALQDAGWYLRQDIIWAKPNPMPESVRDRCTKAHEYLFLLS CCCCCCCCHHHCCCCEEEEEEEECCCCCHHHCEEEECCCCCCHHHHHHHHHHHHEEEEEE KSERYYFDHQAMREPRTQDEDSSVFRGGCYVGGADDNAVLGKRRVPGNKSHKGTTASAND CCCCEEECHHHHCCCCCCCCCCCEEECCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC EKHRTKAGLVDYAQRERDADPGDLGTRNRRSVWTIATQPYAAAHFATFPEALVEPCVLAG HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHCHHHHHHHHHHCC SRPGDVVFDPFFGSGTVGQVAQRLGRRFLGCELNPDYEPLQRDRLRQPGLMLEAS CCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCEEECC >Mature Secondary Structure TWLDRSHLGDCRDLMRTMIADGVRVQTIVTSPPYWGLRSYLPDGHPDKAREIGQEPTLR CCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHCCCCCCHHHHHCCCCCCHH EFIDTLVEVFSLARQLLADDGTAWINMGDSYAANRSYQVASTLMNGDATNQAQAAGGRGM HHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHCCCCHHHHHHHHCCCCCCHHHHCCCCCC KVPDGLKPKDLVGQPWRLAFALQDAGWYLRQDIIWAKPNPMPESVRDRCTKAHEYLFLLS CCCCCCCCHHHCCCCEEEEEEEECCCCCHHHCEEEECCCCCCHHHHHHHHHHHHEEEEEE KSERYYFDHQAMREPRTQDEDSSVFRGGCYVGGADDNAVLGKRRVPGNKSHKGTTASAND CCCCEEECHHHHCCCCCCCCCCCEEECCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC EKHRTKAGLVDYAQRERDADPGDLGTRNRRSVWTIATQPYAAAHFATFPEALVEPCVLAG HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHCHHHHHHHHHHCC SRPGDVVFDPFFGSGTVGQVAQRLGRRFLGCELNPDYEPLQRDRLRQPGLMLEAS CCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2690008; 2251121 [H]