| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is 238026722
Identifier: 238026722
GI number: 238026722
Start: 1177321
End: 1178553
Strand: Reverse
Name: 238026722
Synonym: bglu_1g10790
Alternate gene names: NA
Gene position: 1178553-1177321 (Counterclockwise)
Preceding gene: 238026724
Following gene: 238026721
Centisome position: 30.17
GC content: 68.21
Gene sequence:
>1233_bases ATGCATGCAGCTTTCTCGCGATTTCGCCGCCCGTCGACATCGAGCGCTCCCCGCACGGCCGGCGACCTCGGCCACGATGT CCCGGCCGTGGATGCCGGAGACCCCAATTCCGTCGTCATGGAGATCTTCTCGGCACATCGCGAGATGGGCAGCCTGGCAG TGCTCGAGGACGGACGCCCGATTGGTCTGATCAATCGCAACATCTTCATGTCGCAGATGAGCAAGCCGTTTCATCGCGAG CTGTACGACAAGAAGAGCTGCATCGCCTTCATGGACAAGGAACCGCTGGTGGTGGACGCCGACGTCGACATCGAGTCGCT GGCGTTCCGCACCGTCGAGACCGGCGACAAGGCCCTCGTCGACGGCTTCATCGTGACGCGCAACGGCCGCTTCTCGGGCC TGGGCAGCGGCCTGCAACTGGTGAACGCGGTGGCCGAGATGCAGGCGGAGAAGAACCGCCAGATCATGCAGAGCATCGAG TACGCGAGCGTGATCCAGCGCGCCATGCTGCGCGCCTCCAGCGAAACGCTTTCGACCCGGCTGCACGACGCGGCGATGGC CTGGGAGCCGCGCGACGTGGTGGGCGGCGACTTCTATCATTTCTCGGCGCTGCCGCACGGCTGGTTCGGCGCGGTGGCCG ACTGCACCGGCCACGGCGTGCCGGGCGCCTTCATGACGATGCTCGCCTCGGCGTCGCTGTCCAAGGAACTCGAGCAACTC GGGCCCTGCGATCCGGCCGCGCTGCTCGCGGCGGTCAACCGCAACGTCAAGAGCCTGCTCGGGCAGGCCAACGACTCGGC CGAGCGCGCGCAGTCGAACGACGGCCTCGACGCCGCGATGATCTGGTTCGACGCCGCGCGCAGCGTGCTGCACTTCGCCG GCGCGCGCATCGCGCTGCACCTGCTGCCGCCCGGCAGCGCGCAGTTCGAGACGATCGCGCCGGACAAGATGGGCCTGGGC TACGTGGACAGCCGCGAGGACTACCCCTGGCGCCTGCACTCCCTGCCGGCCGCGGCCGGCAGCCTGCTGTTCGTCTGCAC CGACGGCCTGACCGACCAGATCGGCGGGCCGCGCAACATCTCGTTCGGGCGGCGGCGCGCGCTCGAGGTGATCCGCCAGC ACCGCACCGAACCGCCCGCGGCGATCTGCGAGCAGCTGCGGCAAACGCTGGAGCAATGGCAAGGCGCCCAGCCGCGCCGC GACGACGTCACGTTTTTTTGTGCTCGTATCTAA
Upstream 100 bases:
>100_bases AGTGTGATCGAAACGGGGCCGGCTCGACCGCGCTTGTCACATAAGTTACATGTAGACCCGTTAGCGTCCGGGGTTTCTTC ACATACCGGCTCGCGTCGCC
Downstream 100 bases:
>100_bases TCGATTCCACGAATGTTTCAACTACTCGATCAAGACAGCGCGTTTTTCGACCTGGCGCAGCGGCGCAACGTGCTCTTCTA TCACAAGGGTTTTTTCTCCC
Product: protein serine/threonine phosphatase
Products: NA
Alternate protein names: Diguanylate Cyclase/Phosphodiesterase; Serine Phosphatase; Diguanylate Cyclase; Response Regulator Receiver Domain Protein; Histidine Kinase; Stage II Sporulation E Family Protein; Signal Transduction Protein; Serine Phosphatase RsbU Regulator Of Sigma Subunit; Bacterial Signal Domain Protein; Phosphatase; Signal Domain Protein; Serine Phosphatase RsbU; Pas/Pac Sensor Protein; HAMP Domain-Containing; Sensor Kinase; EAL/GGDEF Domain-Containing Protein; CBS Sensor Hybrid Histidine Kinase; Serine/Threonine Protein Kinase; Serine Phosphatase Regulator Of Sigma Subunit; CBS Sensor Signal Transduction Histidine Kinase; CBS/GGDEF/EAL Domain-Containing Protein; Stage II Sporulation Protein E; Signaling Protein; Sigma Factor SigB Regulation Protein RsbU; EAL Domain-Containing; Sensor Histidine Kinase/Response Regulator; CBS Domain Pair-Containing PP2C Family Phosphatase
Number of amino acids: Translated: 410; Mature: 410
Protein sequence:
>410_residues MHAAFSRFRRPSTSSAPRTAGDLGHDVPAVDAGDPNSVVMEIFSAHREMGSLAVLEDGRPIGLINRNIFMSQMSKPFHRE LYDKKSCIAFMDKEPLVVDADVDIESLAFRTVETGDKALVDGFIVTRNGRFSGLGSGLQLVNAVAEMQAEKNRQIMQSIE YASVIQRAMLRASSETLSTRLHDAAMAWEPRDVVGGDFYHFSALPHGWFGAVADCTGHGVPGAFMTMLASASLSKELEQL GPCDPAALLAAVNRNVKSLLGQANDSAERAQSNDGLDAAMIWFDAARSVLHFAGARIALHLLPPGSAQFETIAPDKMGLG YVDSREDYPWRLHSLPAAAGSLLFVCTDGLTDQIGGPRNISFGRRRALEVIRQHRTEPPAAICEQLRQTLEQWQGAQPRR DDVTFFCARI
Sequences:
>Translated_410_residues MHAAFSRFRRPSTSSAPRTAGDLGHDVPAVDAGDPNSVVMEIFSAHREMGSLAVLEDGRPIGLINRNIFMSQMSKPFHRE LYDKKSCIAFMDKEPLVVDADVDIESLAFRTVETGDKALVDGFIVTRNGRFSGLGSGLQLVNAVAEMQAEKNRQIMQSIE YASVIQRAMLRASSETLSTRLHDAAMAWEPRDVVGGDFYHFSALPHGWFGAVADCTGHGVPGAFMTMLASASLSKELEQL GPCDPAALLAAVNRNVKSLLGQANDSAERAQSNDGLDAAMIWFDAARSVLHFAGARIALHLLPPGSAQFETIAPDKMGLG YVDSREDYPWRLHSLPAAAGSLLFVCTDGLTDQIGGPRNISFGRRRALEVIRQHRTEPPAAICEQLRQTLEQWQGAQPRR DDVTFFCARI >Mature_410_residues MHAAFSRFRRPSTSSAPRTAGDLGHDVPAVDAGDPNSVVMEIFSAHREMGSLAVLEDGRPIGLINRNIFMSQMSKPFHRE LYDKKSCIAFMDKEPLVVDADVDIESLAFRTVETGDKALVDGFIVTRNGRFSGLGSGLQLVNAVAEMQAEKNRQIMQSIE YASVIQRAMLRASSETLSTRLHDAAMAWEPRDVVGGDFYHFSALPHGWFGAVADCTGHGVPGAFMTMLASASLSKELEQL GPCDPAALLAAVNRNVKSLLGQANDSAERAQSNDGLDAAMIWFDAARSVLHFAGARIALHLLPPGSAQFETIAPDKMGLG YVDSREDYPWRLHSLPAAAGSLLFVCTDGLTDQIGGPRNISFGRRRALEVIRQHRTEPPAAICEQLRQTLEQWQGAQPRR DDVTFFCARI
Specific function: Unknown
COG id: COG2208
COG function: function code TK; Serine phosphatase RsbU, regulator of sigma subunit
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44737; Mature: 44737
Theoretical pI: Translated: 6.24; Mature: 6.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHAAFSRFRRPSTSSAPRTAGDLGHDVPAVDAGDPNSVVMEIFSAHREMGSLAVLEDGRP CCCHHHHHCCCCCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCE IGLINRNIFMSQMSKPFHRELYDKKSCIAFMDKEPLVVDADVDIESLAFRTVETGDKALV EEEECHHHHHHHHCCHHHHHHHCCHHHEEEECCCCEEEECCCCHHHHHHHHHCCCCHHHH DGFIVTRNGRFSGLGSGLQLVNAVAEMQAEKNRQIMQSIEYASVIQRAMLRASSETLSTR CCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LHDAAMAWEPRDVVGGDFYHFSALPHGWFGAVADCTGHGVPGAFMTMLASASLSKELEQL HHHHHHCCCCCCCCCCCEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHC GPCDPAALLAAVNRNVKSLLGQANDSAERAQSNDGLDAAMIWFDAARSVLHFAGARIALH CCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCEEEEE LLPPGSAQFETIAPDKMGLGYVDSREDYPWRLHSLPAAAGSLLFVCTDGLTDQIGGPRNI EECCCCCCCCEECCCCCCCCCCCCCCCCCEEHHCCCCCCCCEEEEEECCCHHHCCCCCCC SFGRRRALEVIRQHRTEPPAAICEQLRQTLEQWQGAQPRRDDVTFFCARI CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECC >Mature Secondary Structure MHAAFSRFRRPSTSSAPRTAGDLGHDVPAVDAGDPNSVVMEIFSAHREMGSLAVLEDGRP CCCHHHHHCCCCCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCE IGLINRNIFMSQMSKPFHRELYDKKSCIAFMDKEPLVVDADVDIESLAFRTVETGDKALV EEEECHHHHHHHHCCHHHHHHHCCHHHEEEECCCCEEEECCCCHHHHHHHHHCCCCHHHH DGFIVTRNGRFSGLGSGLQLVNAVAEMQAEKNRQIMQSIEYASVIQRAMLRASSETLSTR CCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LHDAAMAWEPRDVVGGDFYHFSALPHGWFGAVADCTGHGVPGAFMTMLASASLSKELEQL HHHHHHCCCCCCCCCCCEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHC GPCDPAALLAAVNRNVKSLLGQANDSAERAQSNDGLDAAMIWFDAARSVLHFAGARIALH CCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCEEEEE LLPPGSAQFETIAPDKMGLGYVDSREDYPWRLHSLPAAAGSLLFVCTDGLTDQIGGPRNI EECCCCCCCCEECCCCCCCCCCCCCCCCCEEHHCCCCCCCCEEEEEECCCHHHCCCCCCC SFGRRRALEVIRQHRTEPPAAICEQLRQTLEQWQGAQPRRDDVTFFCARI CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA