| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is 238026695
Identifier: 238026695
GI number: 238026695
Start: 1147981
End: 1149030
Strand: Reverse
Name: 238026695
Synonym: bglu_1g10510
Alternate gene names: NA
Gene position: 1149030-1147981 (Counterclockwise)
Preceding gene: 238026696
Following gene: 238026694
Centisome position: 29.41
GC content: 69.9
Gene sequence:
>1050_bases ATGATCCCTCGTCCCTCGGCGCGATACCCGCGTCTCGCCGCGCTGCGCCGCGCGGCCGCTTCGGCGGCACTGGCGGCGCT CGCCACGCTCGCGCCGGCCACCGGCCAGGCCCAGGAAACCGCGATCTGCTACAACTGCCCGCCCGAATGGGCCGACTGGG CCGCGCAGATCGCGGCGATCAGGCAGGCGACGGGCATTCGCGTGCCGGCCGACAACAAGAACTCGGGCCAGGCGATCGCG CAGCTGATCGCCGAGCAGAAAAGCCCGGTGGCCGACGTCGTCTATCTCGGCGTGTCCTCGGCCATCCAGGCCAAGCAGCG CGGCCTGACGGAGCCGTACAAGCCGGCCCACTGGAACGAGATCCCGGCCAACCTGAAGGACCCGCAGGGTTACTGGTTCG CGATCCACTCGGGCACGCTCGGCTTCTTCGTCAACAAGGACGCACTCGACGGCAGGCCGGTGCCGCGCTCGTGGGCCGAC CTGCTCAAGCCCGAATACCGCGGCATGGTGGGCTACCTCGATCCGTCCAGCGCGTTCGTCGGCTATGCCGGCGCGGTGGC CGTGAATCAGGCGCTCGGCGGCACGCTCGACGACTTCCGCCCCGCGCTCGACTGGTTCCGCAAGCTGCGCGCGAACCGGC CGATCGTGCCGAAGCAGACCGCCTACGCGCGCGTGCTGTCGGGCGAGATCCCGATCCTGATCGGCTACGACTTCGATGCC TATCGCGCCGAGTACCAGGACCACGCCAACGCGGCCTTCGTGATCCCCGCCGAGGGCACGATCTCGGTGCCCTATGCGAT GAGCCTGGTGAAAAACGCACCGCACGCGGCCAACGGCCGGAAGGTGCTCGATTTCGTTCTGTCCGACGCGGGCCAGAAGC TGTGGGCCGCGGCGTGGCTGCGGCCGGTGCGCCCGCAGGCGCTGGCGCCCGGCCTGGCCGCGAAATTCCTGCCCGCCAGC GACTACGCGCGCGCGCGAACGGTGGATTTCGACAAGATGGCGGCCGTCCAGCAGGCGTTCGGCCAGCAGTACCTGCAGGC GATGCAATGA
Upstream 100 bases:
>100_bases CGGCTCGCGCTTCGTGCCGGCCGCGCCGTCGCCGGCCGGCTTCTCCATCTCGCGCCATGCGCGCTCGCCCGTCCCATCCG TTATCGTCAGGAGGCCTGCC
Downstream 100 bases:
>100_bases CGGCCGGCACGATGCGCGAGCTCACGTTCCCCAGCCGCTGGCGGGTCGCCCTCGTCGCGCCGGCGCTCGCGGTGTTCACC GCTTTCTGGCTGCTGCCGAT
Product: ABC transporter periplasmic substrate-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 349; Mature: 349
Protein sequence:
>349_residues MIPRPSARYPRLAALRRAAASAALAALATLAPATGQAQETAICYNCPPEWADWAAQIAAIRQATGIRVPADNKNSGQAIA QLIAEQKSPVADVVYLGVSSAIQAKQRGLTEPYKPAHWNEIPANLKDPQGYWFAIHSGTLGFFVNKDALDGRPVPRSWAD LLKPEYRGMVGYLDPSSAFVGYAGAVAVNQALGGTLDDFRPALDWFRKLRANRPIVPKQTAYARVLSGEIPILIGYDFDA YRAEYQDHANAAFVIPAEGTISVPYAMSLVKNAPHAANGRKVLDFVLSDAGQKLWAAAWLRPVRPQALAPGLAAKFLPAS DYARARTVDFDKMAAVQQAFGQQYLQAMQ
Sequences:
>Translated_349_residues MIPRPSARYPRLAALRRAAASAALAALATLAPATGQAQETAICYNCPPEWADWAAQIAAIRQATGIRVPADNKNSGQAIA QLIAEQKSPVADVVYLGVSSAIQAKQRGLTEPYKPAHWNEIPANLKDPQGYWFAIHSGTLGFFVNKDALDGRPVPRSWAD LLKPEYRGMVGYLDPSSAFVGYAGAVAVNQALGGTLDDFRPALDWFRKLRANRPIVPKQTAYARVLSGEIPILIGYDFDA YRAEYQDHANAAFVIPAEGTISVPYAMSLVKNAPHAANGRKVLDFVLSDAGQKLWAAAWLRPVRPQALAPGLAAKFLPAS DYARARTVDFDKMAAVQQAFGQQYLQAMQ >Mature_349_residues MIPRPSARYPRLAALRRAAASAALAALATLAPATGQAQETAICYNCPPEWADWAAQIAAIRQATGIRVPADNKNSGQAIA QLIAEQKSPVADVVYLGVSSAIQAKQRGLTEPYKPAHWNEIPANLKDPQGYWFAIHSGTLGFFVNKDALDGRPVPRSWAD LLKPEYRGMVGYLDPSSAFVGYAGAVAVNQALGGTLDDFRPALDWFRKLRANRPIVPKQTAYARVLSGEIPILIGYDFDA YRAEYQDHANAAFVIPAEGTISVPYAMSLVKNAPHAANGRKVLDFVLSDAGQKLWAAAWLRPVRPQALAPGLAAKFLPAS DYARARTVDFDKMAAVQQAFGQQYLQAMQ
Specific function: Unknown
COG id: COG1840
COG function: function code P; ABC-type Fe3+ transport system, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006059 [H]
Pfam domain/function: PF01547 SBP_bac_1 [H]
EC number: NA
Molecular weight: Translated: 37788; Mature: 37788
Theoretical pI: Translated: 9.69; Mature: 9.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIPRPSARYPRLAALRRAAASAALAALATLAPATGQAQETAICYNCPPEWADWAAQIAAI CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHHHH RQATGIRVPADNKNSGQAIAQLIAEQKSPVADVVYLGVSSAIQAKQRGLTEPYKPAHWNE HHHCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC IPANLKDPQGYWFAIHSGTLGFFVNKDALDGRPVPRSWADLLKPEYRGMVGYLDPSSAFV CCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCHHHHHHHCHHHCCEEEEECCCCHHH GYAGAVAVNQALGGTLDDFRPALDWFRKLRANRPIVPKQTAYARVLSGEIPILIGYDFDA HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCEEEECCCHH YRAEYQDHANAAFVIPAEGTISVPYAMSLVKNAPHAANGRKVLDFVLSDAGQKLWAAAWL HHHHHHHCCCEEEEEECCCCEECHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH RPVRPQALAPGLAAKFLPASDYARARTVDFDKMAAVQQAFGQQYLQAMQ CCCCCHHHCCCHHHHCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MIPRPSARYPRLAALRRAAASAALAALATLAPATGQAQETAICYNCPPEWADWAAQIAAI CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHHHH RQATGIRVPADNKNSGQAIAQLIAEQKSPVADVVYLGVSSAIQAKQRGLTEPYKPAHWNE HHHCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC IPANLKDPQGYWFAIHSGTLGFFVNKDALDGRPVPRSWADLLKPEYRGMVGYLDPSSAFV CCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCHHHHHHHCHHHCCEEEEECCCCHHH GYAGAVAVNQALGGTLDDFRPALDWFRKLRANRPIVPKQTAYARVLSGEIPILIGYDFDA HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCEEEECCCHH YRAEYQDHANAAFVIPAEGTISVPYAMSLVKNAPHAANGRKVLDFVLSDAGQKLWAAAWL HHHHHHHCCCEEEEEECCCCEECHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH RPVRPQALAPGLAAKFLPASDYARARTVDFDKMAAVQQAFGQQYLQAMQ CCCCCHHHCCCHHHHCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7542800; 10675023 [H]