| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is ybcJ [C]
Identifier: 238026580
GI number: 238026580
Start: 1001962
End: 1002180
Strand: Reverse
Name: ybcJ [C]
Synonym: bglu_1g09240
Alternate gene names: 238026580
Gene position: 1002180-1001962 (Counterclockwise)
Preceding gene: 238026581
Following gene: 238026579
Centisome position: 25.65
GC content: 66.67
Gene sequence:
>219_bases ATGCCCAATCTGGATTTCACGCTGACCGGCGAATTCGTCGAACTGCACAACCTGCTCAAGATCACCGGCGTGGCCGACAG CGGCGGCTCCGCCAAGGTCCTGGTCGCCTCGGGCGCGGTGCGCGTCGACGGCGCCGTCGAGCTGCGCAAGACCTGCAAGA TCCGCGCGGGCCAAGTGGTGCTGTTCGAGGACACGCGCATCGCCGTCCACGGCGCTTAA
Upstream 100 bases:
>100_bases GGTGCCGGCCTCACGCGGCGCTCGCCGCGGTGATCGCGCTGGCTTATGATGCGAAGCCTTGTCTTTTTTACTCATGCGCG CACGCCGTGCATGCCATTCG
Downstream 100 bases:
>100_bases GGGTCAGGTTCGGCTTCGCCGCACCCCGCCGAGGTGCGTGCGGCGCTGCCCGCCGGCACGTCGGGCCCCTGCGCGGCGCG ATTCGACAGCGGGAAGCGAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 72; Mature: 71
Protein sequence:
>72_residues MPNLDFTLTGEFVELHNLLKITGVADSGGSAKVLVASGAVRVDGAVELRKTCKIRAGQVVLFEDTRIAVHGA
Sequences:
>Translated_72_residues MPNLDFTLTGEFVELHNLLKITGVADSGGSAKVLVASGAVRVDGAVELRKTCKIRAGQVVLFEDTRIAVHGA >Mature_71_residues PNLDFTLTGEFVELHNLLKITGVADSGGSAKVLVASGAVRVDGAVELRKTCKIRAGQVVLFEDTRIAVHGA
Specific function: Unknown
COG id: COG2501
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI87081752, Length=57, Percent_Identity=54.3859649122807, Blast_Score=61, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 7564; Mature: 7433
Theoretical pI: Translated: 7.52; Mature: 7.52
Prosite motif: PS50889 S4
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPNLDFTLTGEFVELHNLLKITGVADSGGSAKVLVASGAVRVDGAVELRKTCKIRAGQVV CCCCCEEEECCHHHCCCEEEEEEECCCCCCEEEEEECCCEEECCCEEEEEECCCCCCEEE LFEDTRIAVHGA EEECCEEEEECC >Mature Secondary Structure PNLDFTLTGEFVELHNLLKITGVADSGGSAKVLVASGAVRVDGAVELRKTCKIRAGQVV CCCCEEEECCHHHCCCEEEEEEECCCCCCEEEEEECCCEEECCCEEEEEECCCCCCEEE LFEDTRIAVHGA EEECCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA