| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is cysM [H]
Identifier: 238026544
GI number: 238026544
Start: 965912
End: 966814
Strand: Direct
Name: cysM [H]
Synonym: bglu_1g08880
Alternate gene names: 238026544
Gene position: 965912-966814 (Clockwise)
Preceding gene: 238026543
Following gene: 238026546
Centisome position: 24.73
GC content: 67.33
Gene sequence:
>903_bases ATGGCTTACAAGACTATCGAAGACACGATCGGCAACACGCCGCTCGTGCAACTCGTGCGGATCCCCGACGACGAGATCCG GGCCCGCAACAACGTGATCCTCGCGAAGCTCGAAGGCAACAATCCCGCCGGCTCGGTCAAGGACCGCCCGGCGCTGTCGA TGATCCGCAAGGCCGAGGAACGCGGGCGCATCAAGCCCGGCGACACGCTGATCGAGGCGACGAGCGGCAACACCGGCATC GCGCTGGCGATGGCGGCCGCGATCCGCGGCTACCGGATGGTGCTGATCATGCCCGAGGACCTGTCGGTCGAGCGCCGCCA GAGCATGGCCGCCTACGGCGCGGAAATCGTGCTGACGCCGACCAAGGGCGGCATGGAACTCGCGCGCGATCTCGCCGACC AGATGCAGCGCGAAGGCAAGGGCGTGATCCTCGACCAGTTCGCGAATCCGGACAATCCGCTCGCGCACTACGAGACGACC GGCCCGGAAATCTGGCGTGAAACCGAAGGCCGCATCACGCATTTCGTCTCGGCGATGGGGACCACGGGCACCATCATGGG CACCACGCAGTTCCTGAAGGAGCAGCGCCAGAGCATCGAGATCGTCGGTGCGCAGCCGGAGGAAGGCTCGCGCATTCCCG GCATCCGCAAGTGGCCCGAGGCCTACCTGCCGAAGATCTTCGATCGCAGCCGCATCGACCGCGTCGAGAACGTCAGCCAG GCCGCCTCCGAGGCGATGGCGCGCAAGCTCGCCGCGACCGAGGGCCTGTTCTGCGGCATCTCGACGGGCGGCGCCTGCGA GGTGGCGATGCGCATCGCGCGGCAGGTCGAGAACGCGACGATCGTGTTCATCGCCTGCGACCGCGGCGACCGCTATCTGT CGACGGGCGTGTTCCCCGCCTGA
Upstream 100 bases:
>100_bases CGGCCCGGACGCGGGCAGGGACATTCCCGGTGCCGATACGACCGATCCGGCGCTGGATTACAATCGACAGATTCATCGGC CTCGTATTCACTTATCGCCC
Downstream 100 bases:
>100_bases GTGCCGCAAGCGGCTCGCTGCCGTCTTCGCCCAAGAAAAAAGCGCCACGAGGGCGCTTTTTTCATGGGTCCGGCGAGGTG CCTGGGCCTCACTGCGTGGC
Product: cysteine synthase B
Products: NA
Alternate protein names: CSase B; O-acetylserine (thiol)-lyase B; OAS-TL B; O-acetylserine sulfhydrylase B [H]
Number of amino acids: Translated: 300; Mature: 299
Protein sequence:
>300_residues MAYKTIEDTIGNTPLVQLVRIPDDEIRARNNVILAKLEGNNPAGSVKDRPALSMIRKAEERGRIKPGDTLIEATSGNTGI ALAMAAAIRGYRMVLIMPEDLSVERRQSMAAYGAEIVLTPTKGGMELARDLADQMQREGKGVILDQFANPDNPLAHYETT GPEIWRETEGRITHFVSAMGTTGTIMGTTQFLKEQRQSIEIVGAQPEEGSRIPGIRKWPEAYLPKIFDRSRIDRVENVSQ AASEAMARKLAATEGLFCGISTGGACEVAMRIARQVENATIVFIACDRGDRYLSTGVFPA
Sequences:
>Translated_300_residues MAYKTIEDTIGNTPLVQLVRIPDDEIRARNNVILAKLEGNNPAGSVKDRPALSMIRKAEERGRIKPGDTLIEATSGNTGI ALAMAAAIRGYRMVLIMPEDLSVERRQSMAAYGAEIVLTPTKGGMELARDLADQMQREGKGVILDQFANPDNPLAHYETT GPEIWRETEGRITHFVSAMGTTGTIMGTTQFLKEQRQSIEIVGAQPEEGSRIPGIRKWPEAYLPKIFDRSRIDRVENVSQ AASEAMARKLAATEGLFCGISTGGACEVAMRIARQVENATIVFIACDRGDRYLSTGVFPA >Mature_299_residues AYKTIEDTIGNTPLVQLVRIPDDEIRARNNVILAKLEGNNPAGSVKDRPALSMIRKAEERGRIKPGDTLIEATSGNTGIA LAMAAAIRGYRMVLIMPEDLSVERRQSMAAYGAEIVLTPTKGGMELARDLADQMQREGKGVILDQFANPDNPLAHYETTG PEIWRETEGRITHFVSAMGTTGTIMGTTQFLKEQRQSIEIVGAQPEEGSRIPGIRKWPEAYLPKIFDRSRIDRVENVSQA ASEAMARKLAATEGLFCGISTGGACEVAMRIARQVENATIVFIACDRGDRYLSTGVFPA
Specific function: Two Cysteine Synthase Enzymes Are Found. Both Catalyze The Same Reaction. Cysteine Synthase B Can Also Use Thiosulfate In Place Of Sulfide To Give Cysteine Thiosulfonate As A Product. [C]
COG id: COG0031
COG function: function code E; Cysteine synthase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the cysteine synthase/cystathionine beta- synthase family [H]
Homologues:
Organism=Homo sapiens, GI295821202, Length=302, Percent_Identity=39.0728476821192, Blast_Score=186, Evalue=2e-47, Organism=Homo sapiens, GI295821200, Length=302, Percent_Identity=39.0728476821192, Blast_Score=186, Evalue=2e-47, Organism=Homo sapiens, GI4557415, Length=302, Percent_Identity=39.0728476821192, Blast_Score=186, Evalue=2e-47, Organism=Escherichia coli, GI2367138, Length=295, Percent_Identity=62.3728813559322, Blast_Score=377, Evalue=1e-106, Organism=Escherichia coli, GI1788754, Length=317, Percent_Identity=40.0630914826498, Blast_Score=193, Evalue=1e-50, Organism=Caenorhabditis elegans, GI17535051, Length=305, Percent_Identity=41.6393442622951, Blast_Score=213, Evalue=7e-56, Organism=Caenorhabditis elegans, GI17562970, Length=302, Percent_Identity=41.0596026490066, Blast_Score=208, Evalue=3e-54, Organism=Caenorhabditis elegans, GI32566674, Length=297, Percent_Identity=41.7508417508418, Blast_Score=206, Evalue=1e-53, Organism=Caenorhabditis elegans, GI115535073, Length=300, Percent_Identity=39.6666666666667, Blast_Score=200, Evalue=7e-52, Organism=Caenorhabditis elegans, GI17561720, Length=302, Percent_Identity=39.0728476821192, Blast_Score=192, Evalue=2e-49, Organism=Caenorhabditis elegans, GI17534315, Length=317, Percent_Identity=36.2776025236593, Blast_Score=152, Evalue=1e-37, Organism=Caenorhabditis elegans, GI25147552, Length=318, Percent_Identity=34.9056603773585, Blast_Score=151, Evalue=5e-37, Organism=Caenorhabditis elegans, GI32566672, Length=212, Percent_Identity=35.377358490566, Blast_Score=133, Evalue=1e-31, Organism=Saccharomyces cerevisiae, GI6321594, Length=319, Percent_Identity=38.5579937304075, Blast_Score=178, Evalue=1e-45, Organism=Saccharomyces cerevisiae, GI6321449, Length=333, Percent_Identity=33.9339339339339, Blast_Score=142, Evalue=9e-35, Organism=Drosophila melanogaster, GI24643623, Length=311, Percent_Identity=38.5852090032154, Blast_Score=171, Evalue=6e-43, Organism=Drosophila melanogaster, GI20129101, Length=311, Percent_Identity=38.5852090032154, Blast_Score=171, Evalue=6e-43,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001216 - InterPro: IPR005856 - InterPro: IPR005858 - InterPro: IPR001926 [H]
Pfam domain/function: PF00291 PALP [H]
EC number: =2.5.1.47 [H]
Molecular weight: Translated: 32766; Mature: 32635
Theoretical pI: Translated: 5.96; Mature: 5.96
Prosite motif: PS00901 CYS_SYNTHASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAYKTIEDTIGNTPLVQLVRIPDDEIRARNNVILAKLEGNNPAGSVKDRPALSMIRKAEE CCCCCHHHHCCCCCEEEEEECCCHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHH RGRIKPGDTLIEATSGNTGIALAMAAAIRGYRMVLIMPEDLSVERRQSMAAYGAEIVLTP CCCCCCCCEEEEECCCCCCHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHCCCEEEEEC TKGGMELARDLADQMQREGKGVILDQFANPDNPLAHYETTGPEIWRETEGRITHFVSAMG CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEECCCHHHHHHCCCHHHHHHHHHC TTGTIMGTTQFLKEQRQSIEIVGAQPEEGSRIPGIRKWPEAYLPKIFDRSRIDRVENVSQ CCCEEHHHHHHHHHHHHCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH AASEAMARKLAATEGLFCGISTGGACEVAMRIARQVENATIVFIACDRGDRYLSTGVFPA HHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCEECCCCCCC >Mature Secondary Structure AYKTIEDTIGNTPLVQLVRIPDDEIRARNNVILAKLEGNNPAGSVKDRPALSMIRKAEE CCCCHHHHCCCCCEEEEEECCCHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHH RGRIKPGDTLIEATSGNTGIALAMAAAIRGYRMVLIMPEDLSVERRQSMAAYGAEIVLTP CCCCCCCCEEEEECCCCCCHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHCCCEEEEEC TKGGMELARDLADQMQREGKGVILDQFANPDNPLAHYETTGPEIWRETEGRITHFVSAMG CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEECCCHHHHHHCCCHHHHHHHHHC TTGTIMGTTQFLKEQRQSIEIVGAQPEEGSRIPGIRKWPEAYLPKIFDRSRIDRVENVSQ CCCEEHHHHHHHHHHHHCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH AASEAMARKLAATEGLFCGISTGGACEVAMRIARQVENATIVFIACDRGDRYLSTGVFPA HHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10984043 [H]