| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is 238026412
Identifier: 238026412
GI number: 238026412
Start: 810487
End: 811749
Strand: Reverse
Name: 238026412
Synonym: bglu_1g07470
Alternate gene names: NA
Gene position: 811749-810487 (Counterclockwise)
Preceding gene: 238026417
Following gene: 238026411
Centisome position: 20.78
GC content: 70.55
Gene sequence:
>1263_bases ATGCTGAAGCTTTCGCGCATCGCCAACCCCGATGTCGCTCGCGCCGCCGCGAACCTGGTTTGGCTCGGCCTCGAGCGCCT CACGCAGATCGGCGTGGCGATCGTGATCAGCGGCCTGCTCGCGCGCGCGCTCGGCCCCGAGACGTTCGGCAAGTGGCAGT ACGCGAACACGCTGCTGCTGGTGCTGGCGCCGCTGACCTGGGTGTGCGGCGCCGAGATCCTGGTGCCGACCATCGTCCAG CGTCCGGCCGAGCAGCTCGGCGCCGTGCTCGGCAGCGCGTTCGCGCTGCGCATCTCGGTGTCGGCCGCCGCGCTCGCGCT GACCTGGGCAGGCATCGCCGCGCACTGGGTCGATCCGCTCGTCGGCGCGATGCTGGCCGGACTCGCGGTGACGATGGTGC TGCGCGAGCCGTTCGTGGGCGTGGTCAACGCCTGGCTGCAGAGCATGACCTACAGCAAGCCGCAGCTGATCGCCAGCATG GCGGCCGCGCTCGGCAAGGCCGTGCTGGTCTGGCTGCTGGTGCGCGCCTCCGCGGCGCCCGCCAGCTACGGCTGGCTGTG GGCGCTCGAGGCCGGCGCCATCGCGCTCGCGCTGATGCTCTACTACCGGCACCGCCACGGCGGCCGGCTCGGCTGGCGCG TCGAGGCGCCCCTGTTCCGCCATTTCGCCTCGGCGGGCACGGTGTTCTGGTTCGGACTCGTCTGCATGTACCTGTTCCTG AAGCTCGACCGGCTGATGCTCGAGCGCCAGGTGTCGTTCGCCGAACTGGGCCGCTACGCGGCGGCGCAGCAACTGAACGA GAACTGGATCACGCTCGCGCTGCTGCTCGCCCAGACCATCGCGCCCGCCTTCGTCTACCGCGTGGGCGAGACGGCGCGGC TGCGCCGCAACGTCTGGCGGCTAATGGCGATGACCAGCGCGCTGATGGTGGCCGGCGCGGCGGTGCTCGACCTGCTCGCG CCCTTCATCATCGGCCGCGTGTTCGGGCCGGGCTTCGCGCAATCGGCATCGATCTTCCGCTGGGCCGTCTGGCTCTCGGT GCCGGCCGGGATCGAGGCGATCGGCAACCTGGTGGTGCTCAAATACCAGGCGAAATTCGTGCTGCTCGCGAAATGGCTGC TCGCGCTGGCCGTGGCGGCTCTCGCCAACACCTTCGCGATCCCGGCGCTCGGCCTGTACGGCGCGCTGGTCGGCCTCGCC GCCGGCTACCTCGCGGCCGCCTCGGTCAACTTCTACTACATCCGCCAGAGTCTGCACTCATGA
Upstream 100 bases:
>100_bases GCCGCCCATTCTAATGCGTGGATGTTTCAGCGCAGCAAATTAGAAATTGGGCGGCACCGGCCGGACGCGGCCACGTACCC ATTTTCTTCCGATTTTTTTC
Downstream 100 bases:
>100_bases CGCCCTCCCCCGCCTGCGCCGGCACGCTCGACGACGTCGCGGTGCTGATCCCCGCCTACAACGGCCACCACGACCTCGAA CGCACGCTCGACTCGCTCGA
Product: polysaccharide biosynthesis protein
Products: NA
Alternate protein names: Lipopolysaccharide Biosynthesis Protein; O-Antigen Export Protein; Oligosaccharide Translocase; PST Family Polysaccharide Export Protein; O Antigen Flippase
Number of amino acids: Translated: 420; Mature: 420
Protein sequence:
>420_residues MLKLSRIANPDVARAAANLVWLGLERLTQIGVAIVISGLLARALGPETFGKWQYANTLLLVLAPLTWVCGAEILVPTIVQ RPAEQLGAVLGSAFALRISVSAAALALTWAGIAAHWVDPLVGAMLAGLAVTMVLREPFVGVVNAWLQSMTYSKPQLIASM AAALGKAVLVWLLVRASAAPASYGWLWALEAGAIALALMLYYRHRHGGRLGWRVEAPLFRHFASAGTVFWFGLVCMYLFL KLDRLMLERQVSFAELGRYAAAQQLNENWITLALLLAQTIAPAFVYRVGETARLRRNVWRLMAMTSALMVAGAAVLDLLA PFIIGRVFGPGFAQSASIFRWAVWLSVPAGIEAIGNLVVLKYQAKFVLLAKWLLALAVAALANTFAIPALGLYGALVGLA AGYLAAASVNFYYIRQSLHS
Sequences:
>Translated_420_residues MLKLSRIANPDVARAAANLVWLGLERLTQIGVAIVISGLLARALGPETFGKWQYANTLLLVLAPLTWVCGAEILVPTIVQ RPAEQLGAVLGSAFALRISVSAAALALTWAGIAAHWVDPLVGAMLAGLAVTMVLREPFVGVVNAWLQSMTYSKPQLIASM AAALGKAVLVWLLVRASAAPASYGWLWALEAGAIALALMLYYRHRHGGRLGWRVEAPLFRHFASAGTVFWFGLVCMYLFL KLDRLMLERQVSFAELGRYAAAQQLNENWITLALLLAQTIAPAFVYRVGETARLRRNVWRLMAMTSALMVAGAAVLDLLA PFIIGRVFGPGFAQSASIFRWAVWLSVPAGIEAIGNLVVLKYQAKFVLLAKWLLALAVAALANTFAIPALGLYGALVGLA AGYLAAASVNFYYIRQSLHS >Mature_420_residues MLKLSRIANPDVARAAANLVWLGLERLTQIGVAIVISGLLARALGPETFGKWQYANTLLLVLAPLTWVCGAEILVPTIVQ RPAEQLGAVLGSAFALRISVSAAALALTWAGIAAHWVDPLVGAMLAGLAVTMVLREPFVGVVNAWLQSMTYSKPQLIASM AAALGKAVLVWLLVRASAAPASYGWLWALEAGAIALALMLYYRHRHGGRLGWRVEAPLFRHFASAGTVFWFGLVCMYLFL KLDRLMLERQVSFAELGRYAAAQQLNENWITLALLLAQTIAPAFVYRVGETARLRRNVWRLMAMTSALMVAGAAVLDLLA PFIIGRVFGPGFAQSASIFRWAVWLSVPAGIEAIGNLVVLKYQAKFVLLAKWLLALAVAALANTFAIPALGLYGALVGLA AGYLAAASVNFYYIRQSLHS
Specific function: Unknown
COG id: COG2244
COG function: function code R; Membrane protein involved in the export of O-antigen and teichoic acid
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45281; Mature: 45281
Theoretical pI: Translated: 10.58; Mature: 10.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKLSRIANPDVARAAANLVWLGLERLTQIGVAIVISGLLARALGPETFGKWQYANTLLL CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHH VLAPLTWVCGAEILVPTIVQRPAEQLGAVLGSAFALRISVSAAALALTWAGIAAHWVDPL HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHH VGAMLAGLAVTMVLREPFVGVVNAWLQSMTYSKPQLIASMAAALGKAVLVWLLVRASAAP HHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC ASYGWLWALEAGAIALALMLYYRHRHGGRLGWRVEAPLFRHFASAGTVFWFGLVCMYLFL CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHH KLDRLMLERQVSFAELGRYAAAQQLNENWITLALLLAQTIAPAFVYRVGETARLRRNVWR HHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH LMAMTSALMVAGAAVLDLLAPFIIGRVFGPGFAQSASIFRWAVWLSVPAGIEAIGNLVVL HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHCCEEEE KYQAKFVLLAKWLLALAVAALANTFAIPALGLYGALVGLAAGYLAAASVNFYYIRQSLHS EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MLKLSRIANPDVARAAANLVWLGLERLTQIGVAIVISGLLARALGPETFGKWQYANTLLL CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHH VLAPLTWVCGAEILVPTIVQRPAEQLGAVLGSAFALRISVSAAALALTWAGIAAHWVDPL HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHH VGAMLAGLAVTMVLREPFVGVVNAWLQSMTYSKPQLIASMAAALGKAVLVWLLVRASAAP HHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC ASYGWLWALEAGAIALALMLYYRHRHGGRLGWRVEAPLFRHFASAGTVFWFGLVCMYLFL CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHH KLDRLMLERQVSFAELGRYAAAQQLNENWITLALLLAQTIAPAFVYRVGETARLRRNVWR HHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH LMAMTSALMVAGAAVLDLLAPFIIGRVFGPGFAQSASIFRWAVWLSVPAGIEAIGNLVVL HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHCCEEEE KYQAKFVLLAKWLLALAVAALANTFAIPALGLYGALVGLAAGYLAAASVNFYYIRQSLHS EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA