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The map label for this gene is rfbB [H]

Identifier: 238026399

GI number: 238026399

Start: 793561

End: 794934

Strand: Direct

Name: rfbB [H]

Synonym: bglu_1g07340

Alternate gene names: 238026399

Gene position: 793561-794934 (Clockwise)

Preceding gene: 238026395

Following gene: 339905959

Centisome position: 20.31

GC content: 67.9

Gene sequence:

>1374_bases
ATGTCTGAAGAGAGCGCTATCGAGGCAGTGGGTATCACCAAGGGCTTTGCCGCCTATGCCCGGCCGTCCGACCGGCTCAA
GCTCGGCGCGCTCGGCGTGATTTCCCGATTTGCTCCGTCCGTGGCGCGCCGTTCGCGGGTGGCCGGCGAGGCCAGTACGT
TCTGGGCACTGAAGGGCGTGTCGCTGTCGGTGCGGCGCGGCGAGACGATCGGCATCGTGGGCCGCAACGGCTCGGGCAAG
AGCACGCTGCTGCAGATCGTCTGCGGCACGCTGGCGCCGAGCGCGGGCACCCTGAGCGTCAACGGCAAGGTGGCGGCGCT
GCTGGAGCTCGGCTCTGGCTTCGACGTCGAATATACGGGCCGCGAGAACATCTACCTGAACGCGCAGCTCTACGGCCTCA
CGCGCTCGCAGATCGACGCGCGCTACGATTCGATCGCGGCGTTCGCCGACATCGGCGAGTTCATCGACCAGCCGGTCAAG
ACCTATTCGAGCGGGATGTTCGTGCGCTTGGCGTTCGCGGTGATCGCGCACGTCGATGCCGACATCCTCGTGATCGACGA
GGCGCTCGCCGTCGGCGACGCGTTTTTCAATCAAAAGTGCTATCGCTTTCTCGAGGCGTTCAAGCGGCACGGCACGATCC
TGTTCGTCAGCCACGACACGTCGACGATCCGCAAGCTCTGCACGAGGGCGGTCTGGATCGACGCGGGCCGCGTGATCGCG
CAGGGCTCGCCGGCCGAGGTCTGCGGCGCCTATCTCGAGGCGCGCTACGGCGAAGCCGCACCGGCGGCCGGCCCGTCGCG
GGCCGCGCCGGCGCCGGATGCCCAGGCGCCGGCGGCCGGGCAGCTCGACGTGCGCCGTGACGCGATCAACGCCTCGGCGC
TGCGCAACGATATCCGCGTGCTGCCGTTCAACGTGGCGTCGCAGGCGTTCGGCGCCGGCGGCGCCCGGATCGTCGATGCG
CGTCTGGTGGATGCCGAACGCCGGCCGCTGGCATGGGCGGTGGGCGGCGAACCGGTCACGCTGCGCGTGACGATCGAGGT
GGACGATGCGCTCGTCTCGCCAATCGCGGGTTTCTACATCAAGAACGAGCGCGGCCAGGAACTGGTCGGCGCGAATACCT
ACCTGACCTACCTCGGCGATCCGGTCGCCTGCGGCGCGGGCGATACGCTGACCGCCGAGTTTTCGTTCGTGATGCCGGTA
CTGCCGGTCGGCCAGTATTTCATCAACGTGGCGATTGCCGACGGCACGCAGTACGACCACGTGCAGCTGCATTGGATTCA
CGACGCGCTGCCGCTCGAGGTCACCTCTTCGCGAGTGCGTCACGCACTGGTGGGTGTGCCGCTTGCGGGCGTCGAGATGC
TGGCGATCCACTGA

Upstream 100 bases:

>100_bases
TAAGTTCTACAACGTAACCGTCCCGCTGCTCCTTACATATGGCGCTCGCCAGCGTTGTGGTGTATTTTCGCGGCCCAGGG
GTGAGTGCATAACAACCGGT

Downstream 100 bases:

>100_bases
CATCAGTTTGCTCAGGGGCGCGGGCCGGTGATATCCGGCTTCCATGACCCCGCGCCATCCGTATCAGGATTTCTCTATAT
GACAAAAGCAGTGCGGACGT

Product: polysaccharide ABC transporter ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 457; Mature: 456

Protein sequence:

>457_residues
MSEESAIEAVGITKGFAAYARPSDRLKLGALGVISRFAPSVARRSRVAGEASTFWALKGVSLSVRRGETIGIVGRNGSGK
STLLQIVCGTLAPSAGTLSVNGKVAALLELGSGFDVEYTGRENIYLNAQLYGLTRSQIDARYDSIAAFADIGEFIDQPVK
TYSSGMFVRLAFAVIAHVDADILVIDEALAVGDAFFNQKCYRFLEAFKRHGTILFVSHDTSTIRKLCTRAVWIDAGRVIA
QGSPAEVCGAYLEARYGEAAPAAGPSRAAPAPDAQAPAAGQLDVRRDAINASALRNDIRVLPFNVASQAFGAGGARIVDA
RLVDAERRPLAWAVGGEPVTLRVTIEVDDALVSPIAGFYIKNERGQELVGANTYLTYLGDPVACGAGDTLTAEFSFVMPV
LPVGQYFINVAIADGTQYDHVQLHWIHDALPLEVTSSRVRHALVGVPLAGVEMLAIH

Sequences:

>Translated_457_residues
MSEESAIEAVGITKGFAAYARPSDRLKLGALGVISRFAPSVARRSRVAGEASTFWALKGVSLSVRRGETIGIVGRNGSGK
STLLQIVCGTLAPSAGTLSVNGKVAALLELGSGFDVEYTGRENIYLNAQLYGLTRSQIDARYDSIAAFADIGEFIDQPVK
TYSSGMFVRLAFAVIAHVDADILVIDEALAVGDAFFNQKCYRFLEAFKRHGTILFVSHDTSTIRKLCTRAVWIDAGRVIA
QGSPAEVCGAYLEARYGEAAPAAGPSRAAPAPDAQAPAAGQLDVRRDAINASALRNDIRVLPFNVASQAFGAGGARIVDA
RLVDAERRPLAWAVGGEPVTLRVTIEVDDALVSPIAGFYIKNERGQELVGANTYLTYLGDPVACGAGDTLTAEFSFVMPV
LPVGQYFINVAIADGTQYDHVQLHWIHDALPLEVTSSRVRHALVGVPLAGVEMLAIH
>Mature_456_residues
SEESAIEAVGITKGFAAYARPSDRLKLGALGVISRFAPSVARRSRVAGEASTFWALKGVSLSVRRGETIGIVGRNGSGKS
TLLQIVCGTLAPSAGTLSVNGKVAALLELGSGFDVEYTGRENIYLNAQLYGLTRSQIDARYDSIAAFADIGEFIDQPVKT
YSSGMFVRLAFAVIAHVDADILVIDEALAVGDAFFNQKCYRFLEAFKRHGTILFVSHDTSTIRKLCTRAVWIDAGRVIAQ
GSPAEVCGAYLEARYGEAAPAAGPSRAAPAPDAQAPAAGQLDVRRDAINASALRNDIRVLPFNVASQAFGAGGARIVDAR
LVDAERRPLAWAVGGEPVTLRVTIEVDDALVSPIAGFYIKNERGQELVGANTYLTYLGDPVACGAGDTLTAEFSFVMPVL
PVGQYFINVAIADGTQYDHVQLHWIHDALPLEVTSSRVRHALVGVPLAGVEMLAIH

Specific function: May form an ATP-driven O-antigen export apparatus, in association with RfbA [H]

COG id: COG1134

COG function: function code GM; ABC-type polysaccharide/polyol phosphate transport system, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI27436953, Length=222, Percent_Identity=25.2252252252252, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI153792144, Length=204, Percent_Identity=26.4705882352941, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI27477115, Length=227, Percent_Identity=24.2290748898678, Blast_Score=72, Evalue=8e-13,
Organism=Homo sapiens, GI150417984, Length=208, Percent_Identity=26.9230769230769, Blast_Score=71, Evalue=3e-12,
Organism=Homo sapiens, GI6005701, Length=219, Percent_Identity=23.7442922374429, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI157502201, Length=261, Percent_Identity=27.5862068965517, Blast_Score=69, Evalue=7e-12,
Organism=Homo sapiens, GI31657092, Length=220, Percent_Identity=25, Blast_Score=69, Evalue=1e-11,
Organism=Homo sapiens, GI157502203, Length=261, Percent_Identity=27.5862068965517, Blast_Score=69, Evalue=1e-11,
Organism=Escherichia coli, GI48994943, Length=276, Percent_Identity=25.3623188405797, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1789891, Length=204, Percent_Identity=26.9607843137255, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1790467, Length=202, Percent_Identity=27.7227722772277, Blast_Score=72, Evalue=8e-14,
Organism=Escherichia coli, GI1790525, Length=219, Percent_Identity=29.2237442922374, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786253, Length=201, Percent_Identity=28.3582089552239, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI87081709, Length=204, Percent_Identity=23.5294117647059, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI87081791, Length=204, Percent_Identity=25, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787112, Length=219, Percent_Identity=28.7671232876712, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1789751, Length=285, Percent_Identity=23.5087719298246, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI87081782, Length=205, Percent_Identity=24.390243902439, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1789032, Length=218, Percent_Identity=24.7706422018349, Blast_Score=64, Evalue=3e-11,
Organism=Escherichia coli, GI1788210, Length=203, Percent_Identity=27.5862068965517, Blast_Score=63, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI115533608, Length=220, Percent_Identity=24.0909090909091, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17565586, Length=218, Percent_Identity=26.605504587156, Blast_Score=75, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI71983523, Length=206, Percent_Identity=26.6990291262136, Blast_Score=72, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI71983516, Length=206, Percent_Identity=26.6990291262136, Blast_Score=71, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI71983510, Length=206, Percent_Identity=26.6990291262136, Blast_Score=71, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI17565938, Length=249, Percent_Identity=27.710843373494, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI116007184, Length=244, Percent_Identity=27.4590163934426, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI221500365, Length=244, Percent_Identity=27.4590163934426, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24648314, Length=193, Percent_Identity=27.4611398963731, Blast_Score=73, Evalue=4e-13,
Organism=Drosophila melanogaster, GI28573573, Length=203, Percent_Identity=22.6600985221675, Blast_Score=66, Evalue=6e-11,
Organism=Drosophila melanogaster, GI28573571, Length=203, Percent_Identity=22.6600985221675, Blast_Score=66, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 48551; Mature: 48420

Theoretical pI: Translated: 6.32; Mature: 6.32

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEESAIEAVGITKGFAAYARPSDRLKLGALGVISRFAPSVARRSRVAGEASTFWALKGV
CCCCHHEEEECCCCCHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC
SLSVRRGETIGIVGRNGSGKSTLLQIVCGTLAPSAGTLSVNGKVAALLELGSGFDVEYTG
EEEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCEEEEEECCCCCCEEECC
RENIYLNAQLYGLTRSQIDARYDSIAAFADIGEFIDQPVKTYSSGMFVRLAFAVIAHVDA
CCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC
DILVIDEALAVGDAFFNQKCYRFLEAFKRHGTILFVSHDTSTIRKLCTRAVWIDAGRVIA
CEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHEEEECCEEEE
QGSPAEVCGAYLEARYGEAAPAAGPSRAAPAPDAQAPAAGQLDVRRDAINASALRNDIRV
CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHCCCEE
LPFNVASQAFGAGGARIVDARLVDAERRPLAWAVGGEPVTLRVTIEVDDALVSPIAGFYI
EEECHHHHHCCCCCCEEEEEEEECCCCCCEEEEECCCCEEEEEEEEECHHHHCCHHCEEE
KNERGQELVGANTYLTYLGDPVACGAGDTLTAEFSFVMPVLPVGQYFINVAIADGTQYDH
ECCCCCEEECCCEEEEECCCEEECCCCCEEEEEHHHHHHHHHCCCEEEEEEEECCCCCCE
VQLHWIHDALPLEVTSSRVRHALVGVPLAGVEMLAIH
EEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEEC
>Mature Secondary Structure 
SEESAIEAVGITKGFAAYARPSDRLKLGALGVISRFAPSVARRSRVAGEASTFWALKGV
CCCHHEEEECCCCCHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC
SLSVRRGETIGIVGRNGSGKSTLLQIVCGTLAPSAGTLSVNGKVAALLELGSGFDVEYTG
EEEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCEEEEEECCCCCCEEECC
RENIYLNAQLYGLTRSQIDARYDSIAAFADIGEFIDQPVKTYSSGMFVRLAFAVIAHVDA
CCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC
DILVIDEALAVGDAFFNQKCYRFLEAFKRHGTILFVSHDTSTIRKLCTRAVWIDAGRVIA
CEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHEEEECCEEEE
QGSPAEVCGAYLEARYGEAAPAAGPSRAAPAPDAQAPAAGQLDVRRDAINASALRNDIRV
CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHCCCEE
LPFNVASQAFGAGGARIVDARLVDAERRPLAWAVGGEPVTLRVTIEVDDALVSPIAGFYI
EEECHHHHHCCCCCCEEEEEEEECCCCCCEEEEECCCCEEEEEEEEECHHHHCCHHCEEE
KNERGQELVGANTYLTYLGDPVACGAGDTLTAEFSFVMPVLPVGQYFINVAIADGTQYDH
ECCCCCEEECCCEEEEECCCEEECCCCCEEEEEHHHHHHHHHCCCEEEEEEEECCCCCCE
VQLHWIHDALPLEVTSSRVRHALVGVPLAGVEMLAIH
EEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8626291 [H]