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The map label for this gene is abcA [H]

Identifier: 238026397

GI number: 238026397

Start: 790845

End: 792281

Strand: Reverse

Name: abcA [H]

Synonym: bglu_1g07320

Alternate gene names: 238026397

Gene position: 792281-790845 (Counterclockwise)

Preceding gene: 238026398

Following gene: 238026396

Centisome position: 20.28

GC content: 70.35

Gene sequence:

>1437_bases
ATGTCATCTGAGCACGCCGCCTCGCACCAGGCCGGCGAGGTCGCGATTCGCGTGGCGGGCGTCGCCAAGGGCTTCGAATC
GTATCGCCAGCCCGCCGACCGCCTCAAGCGCAGCCTCTACTCGCTGCTGGCCAGGCTCGCCCCGCTGCCCGCGCTGCGCC
GCCACTGGCGGGCCAGGGCTCAGGACAGCGTGCGCATGTTCTGGGCGCTGCGCGAGGTGGATTTCGAGGTCGCGCGCGGC
GAGACGATTGGCATCATAGGCCGCAACGGCTCGGGTAAGAGCACGCTGCTGCAGATCGTCTGCGGCACGCTCGCGCCGAG
CCAGGGCGAGGTCCGCACGCAGGGCCGGATCGCCGCGCTGCTCGAGCTGGGCTCGGGCTTCGACATCGAATACAGCGGGC
GCGAGAACATCTACATCAACGCGCAGCTGCACGGCCTGTCGCGCGACGAAATCACCGCGCGCCTCGACGCCATCATCGCG
TTCGCCGACATCGGCGAGTTCATCGACCAGCCGGTCAAGACCTATTCGAGCGGGATGTTCGTGCGCCTGGCGTTCGCGGT
GATCGCGCACGTCGATGCCGACATCCTCGTGATCGACGAGGCGCTCGCCGTCGGCGACGCCTTCTTCACGCAAAAGTGCA
TGCGCTTTCTGCGCGGTTTCCAGCAGCACGGCACGGTGCTGTTCGTGAGCCACGATTCCGCCGCCGTGCGCAGCCTTTGC
GATCGCGCGATCTGGCTCGATCGAGGCCGCCTGCGCGAAAGCGGCAGTTCGAAGACGGTCTGCACCCACTATTTCGAGGC
GTACTATCGGCAACAACAGGGCGACGGCGTCGCCTGGGGCGAGCGGGTCCGCCACGCGCGGCGCGAGCGCGGCGACCTGC
GCGCACGGCCGGCGGTCGACCAGCGCGAGGCATTCCCGAGCGCCACCGCGCCCGTCATGCCTCGGCTCGGCGGCGTCGGG
ATCGATCCGCAAGCGCTGCCGGCCGCGCGCGAGCGCGCGCTGATCGAGGAGGTCGCATTACTCGGTGCGGCGGGCGCGCC
GCTCGCGTGGATCACCGGCGGCGAGGCCGTCACGCTGCGCATCACGCTGCGCGATCCCGGCGGCCCCAAGCCGCCCTGCG
CCGGCTTTATCGTCAAGGACCGCCTCGGCCAGGCGATTTTCGGCGACGACACCGCATTCTCGCCGCCCACGGGTGCGGTC
GCGGCGGGCGGAGCGTGGCGCGCCGAATTCCGCTTCGCGATGCCGCTGCTGCCACCTGGCGACTACGCCGTCACCGCCTA
CGTGCTGGGTGCCGACGGTGCCACGTCGCGGGTGGTGGACTGCCTGCACGATGCATGCATCGTCAGGTCCGAATCCGCAC
ATCTGGCGGCCGGCCTCGCCGGCACGCCGATGACACGCATCACGCTGAGCGTGGGCGAACCGGCCGACGAGGCCTGA

Upstream 100 bases:

>100_bases
CCGGTCGACTGGAGCCGCTGGGGCGTGTATTCGGCAATGGCCGCCGTGGTCGCGTGGCTCGGCTTCGCCTGGTTTCAGAA
GATGCGCCGAGGTTTCGCCG

Downstream 100 bases:

>100_bases
GTCCGCCGCGCGCCCGGCTCCGAGCCCCTTTCCGGCCCCGTCATGATCCACACCCCGCCGCCCGACGACGCTCCGCCTCC
GCCCGCCGCCTCGCCCTCGT

Product: putative lipopolysaccharide ABC transporter ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 478; Mature: 477

Protein sequence:

>478_residues
MSSEHAASHQAGEVAIRVAGVAKGFESYRQPADRLKRSLYSLLARLAPLPALRRHWRARAQDSVRMFWALREVDFEVARG
ETIGIIGRNGSGKSTLLQIVCGTLAPSQGEVRTQGRIAALLELGSGFDIEYSGRENIYINAQLHGLSRDEITARLDAIIA
FADIGEFIDQPVKTYSSGMFVRLAFAVIAHVDADILVIDEALAVGDAFFTQKCMRFLRGFQQHGTVLFVSHDSAAVRSLC
DRAIWLDRGRLRESGSSKTVCTHYFEAYYRQQQGDGVAWGERVRHARRERGDLRARPAVDQREAFPSATAPVMPRLGGVG
IDPQALPAARERALIEEVALLGAAGAPLAWITGGEAVTLRITLRDPGGPKPPCAGFIVKDRLGQAIFGDDTAFSPPTGAV
AAGGAWRAEFRFAMPLLPPGDYAVTAYVLGADGATSRVVDCLHDACIVRSESAHLAAGLAGTPMTRITLSVGEPADEA

Sequences:

>Translated_478_residues
MSSEHAASHQAGEVAIRVAGVAKGFESYRQPADRLKRSLYSLLARLAPLPALRRHWRARAQDSVRMFWALREVDFEVARG
ETIGIIGRNGSGKSTLLQIVCGTLAPSQGEVRTQGRIAALLELGSGFDIEYSGRENIYINAQLHGLSRDEITARLDAIIA
FADIGEFIDQPVKTYSSGMFVRLAFAVIAHVDADILVIDEALAVGDAFFTQKCMRFLRGFQQHGTVLFVSHDSAAVRSLC
DRAIWLDRGRLRESGSSKTVCTHYFEAYYRQQQGDGVAWGERVRHARRERGDLRARPAVDQREAFPSATAPVMPRLGGVG
IDPQALPAARERALIEEVALLGAAGAPLAWITGGEAVTLRITLRDPGGPKPPCAGFIVKDRLGQAIFGDDTAFSPPTGAV
AAGGAWRAEFRFAMPLLPPGDYAVTAYVLGADGATSRVVDCLHDACIVRSESAHLAAGLAGTPMTRITLSVGEPADEA
>Mature_477_residues
SSEHAASHQAGEVAIRVAGVAKGFESYRQPADRLKRSLYSLLARLAPLPALRRHWRARAQDSVRMFWALREVDFEVARGE
TIGIIGRNGSGKSTLLQIVCGTLAPSQGEVRTQGRIAALLELGSGFDIEYSGRENIYINAQLHGLSRDEITARLDAIIAF
ADIGEFIDQPVKTYSSGMFVRLAFAVIAHVDADILVIDEALAVGDAFFTQKCMRFLRGFQQHGTVLFVSHDSAAVRSLCD
RAIWLDRGRLRESGSSKTVCTHYFEAYYRQQQGDGVAWGERVRHARRERGDLRARPAVDQREAFPSATAPVMPRLGGVGI
DPQALPAARERALIEEVALLGAAGAPLAWITGGEAVTLRITLRDPGGPKPPCAGFIVKDRLGQAIFGDDTAFSPPTGAVA
AGGAWRAEFRFAMPLLPPGDYAVTAYVLGADGATSRVVDCLHDACIVRSESAHLAAGLAGTPMTRITLSVGEPADEA

Specific function: Influences the expression of the surface array protein gene (vapA). May have both regulatory and transport activities [H]

COG id: COG1134

COG function: function code GM; ABC-type polysaccharide/polyol phosphate transport system, ATPase component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI27477115, Length=262, Percent_Identity=25.1908396946565, Blast_Score=80, Evalue=4e-15,
Organism=Homo sapiens, GI6005701, Length=262, Percent_Identity=24.4274809160305, Blast_Score=79, Evalue=9e-15,
Organism=Homo sapiens, GI27436953, Length=195, Percent_Identity=26.6666666666667, Blast_Score=77, Evalue=4e-14,
Organism=Homo sapiens, GI153792144, Length=204, Percent_Identity=26.4705882352941, Blast_Score=77, Evalue=4e-14,
Organism=Homo sapiens, GI27262624, Length=267, Percent_Identity=23.2209737827715, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI27262626, Length=267, Percent_Identity=23.2209737827715, Blast_Score=71, Evalue=2e-12,
Organism=Escherichia coli, GI1787758, Length=228, Percent_Identity=26.7543859649123, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1789891, Length=207, Percent_Identity=28.0193236714976, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI87081709, Length=204, Percent_Identity=24.0196078431373, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI48994943, Length=283, Percent_Identity=24.3816254416961, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1786398, Length=217, Percent_Identity=25.8064516129032, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1789751, Length=180, Percent_Identity=28.8888888888889, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1788210, Length=250, Percent_Identity=26.4, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1790467, Length=198, Percent_Identity=24.7474747474747, Blast_Score=64, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71983523, Length=210, Percent_Identity=28.0952380952381, Blast_Score=78, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI71983516, Length=210, Percent_Identity=28.0952380952381, Blast_Score=78, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI71983510, Length=210, Percent_Identity=28.0952380952381, Blast_Score=78, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI17565586, Length=214, Percent_Identity=26.6355140186916, Blast_Score=76, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI115533608, Length=211, Percent_Identity=23.2227488151659, Blast_Score=70, Evalue=4e-12,
Organism=Drosophila melanogaster, GI28571209, Length=271, Percent_Identity=22.140221402214, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24648314, Length=193, Percent_Identity=25.9067357512953, Blast_Score=65, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 51501; Mature: 51370

Theoretical pI: Translated: 7.58; Mature: 7.58

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSEHAASHQAGEVAIRVAGVAKGFESYRQPADRLKRSLYSLLARLAPLPALRRHWRARA
CCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
QDSVRMFWALREVDFEVARGETIGIIGRNGSGKSTLLQIVCGTLAPSQGEVRTQGRIAAL
HHHHHHHHHHHHHHHHEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCHHEEE
LELGSGFDIEYSGRENIYINAQLHGLSRDEITARLDAIIAFADIGEFIDQPVKTYSSGMF
EECCCCCCEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
VRLAFAVIAHVDADILVIDEALAVGDAFFTQKCMRFLRGFQQHGTVLFVSHDSAAVRSLC
HHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH
DRAIWLDRGRLRESGSSKTVCTHYFEAYYRQQQGDGVAWGERVRHARRERGDLRARPAVD
HHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCC
QREAFPSATAPVMPRLGGVGIDPQALPAARERALIEEVALLGAAGAPLAWITGGEAVTLR
HHHCCCCCCCCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEEE
ITLRDPGGPKPPCAGFIVKDRLGQAIFGDDTAFSPPTGAVAAGGAWRAEFRFAMPLLPPG
EEEECCCCCCCCCCCCHHHHHCCCEEECCCCCCCCCCCCEECCCCEEEEEEEECCCCCCC
DYAVTAYVLGADGATSRVVDCLHDACIVRSESAHLAAGLAGTPMTRITLSVGEPADEA
CCEEEEEEEECCCCHHHHHHHHHHHHHEECCCCCEEECCCCCCCEEEEEEECCCCCCC
>Mature Secondary Structure 
SSEHAASHQAGEVAIRVAGVAKGFESYRQPADRLKRSLYSLLARLAPLPALRRHWRARA
CCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
QDSVRMFWALREVDFEVARGETIGIIGRNGSGKSTLLQIVCGTLAPSQGEVRTQGRIAAL
HHHHHHHHHHHHHHHHEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCHHEEE
LELGSGFDIEYSGRENIYINAQLHGLSRDEITARLDAIIAFADIGEFIDQPVKTYSSGMF
EECCCCCCEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
VRLAFAVIAHVDADILVIDEALAVGDAFFTQKCMRFLRGFQQHGTVLFVSHDSAAVRSLC
HHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH
DRAIWLDRGRLRESGSSKTVCTHYFEAYYRQQQGDGVAWGERVRHARRERGDLRARPAVD
HHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCC
QREAFPSATAPVMPRLGGVGIDPQALPAARERALIEEVALLGAAGAPLAWITGGEAVTLR
HHHCCCCCCCCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEEE
ITLRDPGGPKPPCAGFIVKDRLGQAIFGDDTAFSPPTGAVAAGGAWRAEFRFAMPLLPPG
EEEECCCCCCCCCCCCHHHHHCCCEEECCCCCCCCCCCCEECCCCEEEEEEEECCCCCCC
DYAVTAYVLGADGATSRVVDCLHDACIVRSESAHLAAGLAGTPMTRITLSVGEPADEA
CCEEEEEEEECCCCHHHHHHHHHHHHHEECCCCCEEECCCCCCCEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8491726 [H]