| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
Click here to switch to the map view.
The map label for this gene is 238026363
Identifier: 238026363
GI number: 238026363
Start: 751084
End: 752295
Strand: Direct
Name: 238026363
Synonym: bglu_1g06970
Alternate gene names: NA
Gene position: 751084-752295 (Clockwise)
Preceding gene: 238026358
Following gene: 238026365
Centisome position: 19.23
GC content: 69.39
Gene sequence:
>1212_bases ATGTCCCATAACGATTATTCGCCGATTCCCTGCCCCGTCGTGGTCCCGCTCGACGCGATCCTGCCCGAGGAGCCGCTCCT GATGATGGGCGCCGGCCCGGTGCCGATCCCGGCCGCGGTCGCCAAGGCCAACGCGATCGTGATCAACCACCTGGGCGCGA CCATGGCGAAGATCATCGAACAGGTGAAGGAGATGGCGCGCTACGTGTTCCAGACGCGCACGAAGTGGGTGCTCGGCGTG GCCGGCCCCGGCTCGGCCGCGATGGAGATGGCGATCTCGAACCTGGCCTGGCGCGGTACGCGCGTGCTGTCGATCCGCAA CGGCTTCTTCAGTGCCCGGATGGCCGAGATGGCCACGCGCATCGGCGCCGAGGTCGCGCTGCTCGACGTACCCGACCGCG AGGCGGCGAACCTCGCGGCGGTGGCCGCCGCGATCGAGCGCGAGCGGCCCGAGATCGTGACGATCGTCCACGGCGAGACC TCGAACACGGTCTGGAACCGGCAGCTGCGGGAGATCGCGGCACTGGCCAAGGCGGCCGGCGCGCTGGTGGTGGTCGACGC GGTCTGCACGCTGTCGACCATGCCGCTCGAGATGGACGGCTGGGGCATCGACGCGGTGATCACGGGCGGCCAGAAGGGGC TGTCGTCGATTCCGGGCGTGTCGCTGATCGCCTTCTCCGATGCCGCCTGGGAGCGCATGAAGCAGCGCCCCGAGCCGAAC GCGCACTGGTGCCTCGACATGGCGCTCGCCGAGCACTTCTGGCACAACGCCGGCTACCACTACACGGCGCCCGTCTCGGG CGTGCTCGCGCTGCACGAGGCCCTGCGCCTCGTCTGCCAGGAAACGCTCGAAAGCCGCTACGCGCGCCACCAGCGCTGCG CGCTCGCGCTGCAGGCCGGAATCGCGGCGCTCGGCCTCGAGCTCTATGCGCCCGAGGCGTGCCGGCTCAATTCGGTGGTG GGCATCCGCGTGCCCGAGGGTCTCACGCCGGGCATGATCTGCGGACACATCTCGAAGCAGTATCAGGTCGAGATCTCGGG TTCGTTCGGCCTGCCGATCGTGCGGATCGGGCAGATGGGCGAGCAGTGCCGCGAACACAACCTGTTCCGTACGCTGCACG CGTTCGGCCGCACCATGGTCGACCTGAAGGTGCCGGTCGATCTGTCGGGCGGCGTCTCCGCGCTCGAACAGGCGCTGTCG AACCGGCTCTGA
Upstream 100 bases:
>100_bases GACGCCGGCGAGCGGGGCTTGCGTGCGGGGCCGGTTCGCGGAATGATCGACGGTTGCGGTGCGCCGCACCGCATCAACCG CTTCCGCCGAGCCTTCGCCC
Downstream 100 bases:
>100_bases GAAACGCGGCCGGCCCGCGCGGGCCGGCACCGGGCTCGGCGGCGGGGCGGGGCAGGCCCGGCCGGCCCGCCGTCCGGTGC GGCGGCAACGATCCCGGCGT
Product: serine-pyruvate aminotransferase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 403; Mature: 402
Protein sequence:
>403_residues MSHNDYSPIPCPVVVPLDAILPEEPLLMMGAGPVPIPAAVAKANAIVINHLGATMAKIIEQVKEMARYVFQTRTKWVLGV AGPGSAAMEMAISNLAWRGTRVLSIRNGFFSARMAEMATRIGAEVALLDVPDREAANLAAVAAAIERERPEIVTIVHGET SNTVWNRQLREIAALAKAAGALVVVDAVCTLSTMPLEMDGWGIDAVITGGQKGLSSIPGVSLIAFSDAAWERMKQRPEPN AHWCLDMALAEHFWHNAGYHYTAPVSGVLALHEALRLVCQETLESRYARHQRCALALQAGIAALGLELYAPEACRLNSVV GIRVPEGLTPGMICGHISKQYQVEISGSFGLPIVRIGQMGEQCREHNLFRTLHAFGRTMVDLKVPVDLSGGVSALEQALS NRL
Sequences:
>Translated_403_residues MSHNDYSPIPCPVVVPLDAILPEEPLLMMGAGPVPIPAAVAKANAIVINHLGATMAKIIEQVKEMARYVFQTRTKWVLGV AGPGSAAMEMAISNLAWRGTRVLSIRNGFFSARMAEMATRIGAEVALLDVPDREAANLAAVAAAIERERPEIVTIVHGET SNTVWNRQLREIAALAKAAGALVVVDAVCTLSTMPLEMDGWGIDAVITGGQKGLSSIPGVSLIAFSDAAWERMKQRPEPN AHWCLDMALAEHFWHNAGYHYTAPVSGVLALHEALRLVCQETLESRYARHQRCALALQAGIAALGLELYAPEACRLNSVV GIRVPEGLTPGMICGHISKQYQVEISGSFGLPIVRIGQMGEQCREHNLFRTLHAFGRTMVDLKVPVDLSGGVSALEQALS NRL >Mature_402_residues SHNDYSPIPCPVVVPLDAILPEEPLLMMGAGPVPIPAAVAKANAIVINHLGATMAKIIEQVKEMARYVFQTRTKWVLGVA GPGSAAMEMAISNLAWRGTRVLSIRNGFFSARMAEMATRIGAEVALLDVPDREAANLAAVAAAIERERPEIVTIVHGETS NTVWNRQLREIAALAKAAGALVVVDAVCTLSTMPLEMDGWGIDAVITGGQKGLSSIPGVSLIAFSDAAWERMKQRPEPNA HWCLDMALAEHFWHNAGYHYTAPVSGVLALHEALRLVCQETLESRYARHQRCALALQAGIAALGLELYAPEACRLNSVVG IRVPEGLTPGMICGHISKQYQVEISGSFGLPIVRIGQMGEQCREHNLFRTLHAFGRTMVDLKVPVDLSGGVSALEQALSN RL
Specific function: Unknown
COG id: COG0075
COG function: function code E; Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family [H]
Homologues:
Organism=Homo sapiens, GI4557289, Length=377, Percent_Identity=31.5649867374005, Blast_Score=179, Evalue=4e-45, Organism=Caenorhabditis elegans, GI17536281, Length=355, Percent_Identity=30.1408450704225, Blast_Score=164, Evalue=6e-41, Organism=Saccharomyces cerevisiae, GI6321079, Length=366, Percent_Identity=24.5901639344262, Blast_Score=78, Evalue=2e-15, Organism=Drosophila melanogaster, GI17530823, Length=363, Percent_Identity=32.2314049586777, Blast_Score=182, Evalue=3e-46,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000192 - InterPro: IPR015424 - InterPro: IPR015421 - InterPro: IPR015422 [H]
Pfam domain/function: PF00266 Aminotran_5 [H]
EC number: NA
Molecular weight: Translated: 43385; Mature: 43254
Theoretical pI: Translated: 6.79; Mature: 6.79
Prosite motif: PS00595 AA_TRANSFER_CLASS_5
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 6.0 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 5.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSHNDYSPIPCPVVVPLDAILPEEPLLMMGAGPVPIPAAVAKANAIVINHLGATMAKIIE CCCCCCCCCCCCEEECHHHHCCCCCEEEECCCCCCCCHHHHHCCEEEEEHHHHHHHHHHH QVKEMARYVFQTRTKWVLGVAGPGSAAMEMAISNLAWRGTRVLSIRNGFFSARMAEMATR HHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCEEEEEEECCHHHHHHHHHHHH IGAEVALLDVPDREAANLAAVAAAIERERPEIVTIVHGETSNTVWNRQLREIAALAKAAG HCCEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCC ALVVVDAVCTLSTMPLEMDGWGIDAVITGGQKGLSSIPGVSLIAFSDAAWERMKQRPEPN CEEEEEHHHHHCCCCEEECCCCEEEEEECCCCCHHCCCCCEEEEECHHHHHHHHHCCCCC AHWCLDMALAEHFWHNAGYHYTAPVSGVLALHEALRLVCQETLESRYARHQRCALALQAG HHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IAALGLELYAPEACRLNSVVGIRVPEGLTPGMICGHISKQYQVEISGSFGLPIVRIGQMG HHHHHHHHCCCCCCCCCCEEEEECCCCCCCCHHHHCCCCEEEEEECCCCCCCHHHHHHHH EQCREHNLFRTLHAFGRTMVDLKVPVDLSGGVSALEQALSNRL HHHHHHHHHHHHHHHCCEEEEEEECCCCCCCHHHHHHHHHCCC >Mature Secondary Structure SHNDYSPIPCPVVVPLDAILPEEPLLMMGAGPVPIPAAVAKANAIVINHLGATMAKIIE CCCCCCCCCCCEEECHHHHCCCCCEEEECCCCCCCCHHHHHCCEEEEEHHHHHHHHHHH QVKEMARYVFQTRTKWVLGVAGPGSAAMEMAISNLAWRGTRVLSIRNGFFSARMAEMATR HHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCEEEEEEECCHHHHHHHHHHHH IGAEVALLDVPDREAANLAAVAAAIERERPEIVTIVHGETSNTVWNRQLREIAALAKAAG HCCEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCC ALVVVDAVCTLSTMPLEMDGWGIDAVITGGQKGLSSIPGVSLIAFSDAAWERMKQRPEPN CEEEEEHHHHHCCCCEEECCCCEEEEEECCCCCHHCCCCCEEEEECHHHHHHHHHCCCCC AHWCLDMALAEHFWHNAGYHYTAPVSGVLALHEALRLVCQETLESRYARHQRCALALQAG HHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IAALGLELYAPEACRLNSVVGIRVPEGLTPGMICGHISKQYQVEISGSFGLPIVRIGQMG HHHHHHHHCCCCCCCCCCEEEEECCCCCCCCHHHHCCCCEEEEEECCCCCCCHHHHHHHH EQCREHNLFRTLHAFGRTMVDLKVPVDLSGGVSALEQALSNRL HHHHHHHHHHHHHHHCCEEEEEEECCCCCCCHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]