| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is 238026346
Identifier: 238026346
GI number: 238026346
Start: 735339
End: 735908
Strand: Direct
Name: 238026346
Synonym: bglu_1g06800
Alternate gene names: NA
Gene position: 735339-735908 (Clockwise)
Preceding gene: 238026345
Following gene: 238026347
Centisome position: 18.82
GC content: 74.04
Gene sequence:
>570_bases ATGCGGGACCGAGCAAGAGCGGCGGGCGTCACGCTCGTCGAATCGATGGTGGCGATCGCGCTGGTGGCGCTCGTCGCCAC CTATGCGATGCCGTCGTTCGTGGCGTGGCGGCAGCGCGACCGGGTCGATGCGCGTGCAACGGCCATGCTGGCCGCGCTCG CGGCCGCGCGCGTCGAGGCCGTGTCGCGCGGCGTACGCGTTGTGCTGTGCCGCGGCGACGGCAGTGCCGGGCAGCCTTGC CTGGCGGCGCAGCATCGTTGCGACGGTGAAGGCGCGTGGTCGTGCGCCTGGGCGGTGGTGGCGCTCGACGCGGCGGCACC GGGCGATACGGCACGCGGCACGGTGCTGCGCAGAATTCCGGCCGACTCCGGCGTGCGGGTCGAGGGCGCCGTGGCCGACG TCGTGTTCACGCCGCCTGCGGGACAAGTGATCGGAGGCTTTCGGCGCTTCGAATTCTCGGCGCGCGCGCGAATTTCCTCG ACGGGCGGGCCCGTCGCCTCGCGCTGCCTGCGGATTGCGGCCGGCGGCCGGGCCCGGTTGTCGCCGGGACGCTGCGGAGC AGCCCGATGA
Upstream 100 bases:
>100_bases GTCACCGGCGCGGTCGGCTCACGCCATTCGGCCGTTCGGCCAATGGCGCGCCCGCGTTCGCCCCGCTACAGTCGAGGCGT CGTGTCGGCGGAGCGGGATC
Downstream 100 bases:
>100_bases GGCGCGCGCGAGCGGTCATGGCCGGCAGCTCCCTGCTCGAGGTCGCGATCGCACTGCTGCTGCTTGCCGGAGCGACGGTC GGCGTACTCGGCGCGCAGCT
Product: Tfp pilus assembly protein FimT-like protein
Products: NA
Alternate protein names: Tfp Pilus Assembly Protein FimT-Like; Tfp Pilus Assembly Protein FimT
Number of amino acids: Translated: 189; Mature: 189
Protein sequence:
>189_residues MRDRARAAGVTLVESMVAIALVALVATYAMPSFVAWRQRDRVDARATAMLAALAAARVEAVSRGVRVVLCRGDGSAGQPC LAAQHRCDGEGAWSCAWAVVALDAAAPGDTARGTVLRRIPADSGVRVEGAVADVVFTPPAGQVIGGFRRFEFSARARISS TGGPVASRCLRIAAGGRARLSPGRCGAAR
Sequences:
>Translated_189_residues MRDRARAAGVTLVESMVAIALVALVATYAMPSFVAWRQRDRVDARATAMLAALAAARVEAVSRGVRVVLCRGDGSAGQPC LAAQHRCDGEGAWSCAWAVVALDAAAPGDTARGTVLRRIPADSGVRVEGAVADVVFTPPAGQVIGGFRRFEFSARARISS TGGPVASRCLRIAAGGRARLSPGRCGAAR >Mature_189_residues MRDRARAAGVTLVESMVAIALVALVATYAMPSFVAWRQRDRVDARATAMLAALAAARVEAVSRGVRVVLCRGDGSAGQPC LAAQHRCDGEGAWSCAWAVVALDAAAPGDTARGTVLRRIPADSGVRVEGAVADVVFTPPAGQVIGGFRRFEFSARARISS TGGPVASRCLRIAAGGRARLSPGRCGAAR
Specific function: Unknown
COG id: COG4970
COG function: function code NU; Tfp pilus assembly protein FimT
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19501; Mature: 19501
Theoretical pI: Translated: 11.76; Mature: 11.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.2 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 3.2 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRDRARAAGVTLVESMVAIALVALVATYAMPSFVAWRQRDRVDARATAMLAALAAARVEA CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH VSRGVRVVLCRGDGSAGQPCLAAQHRCDGEGAWSCAWAVVALDAAAPGDTARGTVLRRIP HHCCEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEECC ADSGVRVEGAVADVVFTPPAGQVIGGFRRFEFSARARISSTGGPVASRCLRIAAGGRARL CCCCCEEECEEEEEEECCCCCHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHCCCCCCC SPGRCGAAR CCCCCCCCC >Mature Secondary Structure MRDRARAAGVTLVESMVAIALVALVATYAMPSFVAWRQRDRVDARATAMLAALAAARVEA CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH VSRGVRVVLCRGDGSAGQPCLAAQHRCDGEGAWSCAWAVVALDAAAPGDTARGTVLRRIP HHCCEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEECC ADSGVRVEGAVADVVFTPPAGQVIGGFRRFEFSARARISSTGGPVASRCLRIAAGGRARL CCCCCEEECEEEEEEECCCCCHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHCCCCCCC SPGRCGAAR CCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA