Click here to switch to the map view.

The map label for this gene is ybgF [C]

Identifier: 238026335

GI number: 238026335

Start: 726564

End: 727313

Strand: Reverse

Name: ybgF [C]

Synonym: bglu_1g06690

Alternate gene names: 238026335

Gene position: 727313-726564 (Counterclockwise)

Preceding gene: 238026336

Following gene: 238026327

Centisome position: 18.62

GC content: 69.47

Gene sequence:

>750_bases
ATGACGCACCGCTTCCCTTGGCTGCGTGCAGCCGCTGCGGCCTGCGTTGCCGGAGTCGCGCTCGGCGCGGCCCCGGCGCA
CGCCGGCATGTTCGATGACGACGAGGCTCGCCGCGCCGTGCTCGACCTGCGCACGCGCACCGACAGCCTGACGAACCAGC
TCTCCGCCGCGCAGCGGACGATCCTCGATCAGTCCGCGCGTCTCGACCAGCTCAACCAGCAGGTCGCGACGCTGCGCGGC
CAGAACGAGGATCTGACGAACCGTCTGACGACGCTCGAGCGCCAGCAGCGCGACGCCTACACCGATCTCGATGCGCGGCT
CAAGAAGTTCGAGCCGCAGCAGACCACGGTGGACGGCGTCGAGGGTACGGTCCAGCCCGGGGAAACGGACGCGTTCAACG
CGGCGTCGCAGCAGTTCCGCAGCGGCGACTTCAAGGGCGCGGCCGCTTCGTTCCGCGCCTTCATCGCGAAGTATCCGCAG
AGCCCGTATCAGCCGGTCGCGCAGTACTGGCTCGGCAACGCCCAGTACGCGCTGCGCGACTACAAGGGCTCGACGGCCAC
CTGGCAGGCGCTCGTGAAGGCCTACCCGCAGCATCCGCGCGCCGGCGATGCGCTGGTGGCGATCGGCACCAACCAGCTCG
AGCAGGGGCAGAAGGCGGCAGCCAAGCGCACCTTCGAGCAGGTCCTCTCGCAGTTCCAGGGGTCGAGCGCCGCGCAGGCG
GCCCAGGCGAAGATCGAATCGATCAAGTGA

Upstream 100 bases:

>100_bases
AAGGAAAAGCCGCAAGCGACCGGCCACGACGAAGCCGCATGGGCGCAGAACCGCCGCGCGGACATCGTCTACCAACAGTA
AGTAACGGAAGAACCTCCGC

Downstream 100 bases:

>100_bases
GCGACGGCCGGGCCGTCAGGCGATTGATGCTTGACGGCCTGACGAAGCGTTCACTATAATCTCGCCTCTTTGGGTCGTTA
GCTCAGCTGGTAGAGCAGCG

Product: tol-pal system protein YbgF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 248

Protein sequence:

>249_residues
MTHRFPWLRAAAAACVAGVALGAAPAHAGMFDDDEARRAVLDLRTRTDSLTNQLSAAQRTILDQSARLDQLNQQVATLRG
QNEDLTNRLTTLERQQRDAYTDLDARLKKFEPQQTTVDGVEGTVQPGETDAFNAASQQFRSGDFKGAAASFRAFIAKYPQ
SPYQPVAQYWLGNAQYALRDYKGSTATWQALVKAYPQHPRAGDALVAIGTNQLEQGQKAAAKRTFEQVLSQFQGSSAAQA
AQAKIESIK

Sequences:

>Translated_249_residues
MTHRFPWLRAAAAACVAGVALGAAPAHAGMFDDDEARRAVLDLRTRTDSLTNQLSAAQRTILDQSARLDQLNQQVATLRG
QNEDLTNRLTTLERQQRDAYTDLDARLKKFEPQQTTVDGVEGTVQPGETDAFNAASQQFRSGDFKGAAASFRAFIAKYPQ
SPYQPVAQYWLGNAQYALRDYKGSTATWQALVKAYPQHPRAGDALVAIGTNQLEQGQKAAAKRTFEQVLSQFQGSSAAQA
AQAKIESIK
>Mature_248_residues
THRFPWLRAAAAACVAGVALGAAPAHAGMFDDDEARRAVLDLRTRTDSLTNQLSAAQRTILDQSARLDQLNQQVATLRGQ
NEDLTNRLTTLERQQRDAYTDLDARLKKFEPQQTTVDGVEGTVQPGETDAFNAASQQFRSGDFKGAAASFRAFIAKYPQS
PYQPVAQYWLGNAQYALRDYKGSTATWQALVKAYPQHPRAGDALVAIGTNQLEQGQKAAAKRTFEQVLSQFQGSSAAQAA
QAKIESIK

Specific function: Unknown

COG id: COG1729

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ybgF [H]

Homologues:

Organism=Escherichia coli, GI1786963, Length=102, Percent_Identity=34.3137254901961, Blast_Score=75, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014162
- InterPro:   IPR013026
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27205; Mature: 27074

Theoretical pI: Translated: 9.31; Mature: 9.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHCC
>Mature Secondary Structure 
THRFPWLRAAAAACVAGVALGAAPAHAGMFDDDEARRAVLDLRTRTDSLTNQLSAAQRT
CCCCHHHHHHHHHHHHHHHHCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILDQSARLDQLNQQVATLRGQNEDLTNRLTTLERQQRDAYTDLDARLKKFEPQQTTVDGV
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
EGTVQPGETDAFNAASQQFRSGDFKGAAASFRAFIAKYPQSPYQPVAQYWLGNAQYALRD
CCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHH
YKGSTATWQALVKAYPQHPRAGDALVAIGTNQLEQGQKAAAKRTFEQVLSQFQGSSAAQA
CCCCHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
AQAKIESIK
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12534463 [H]