| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is xanB [H]
Identifier: 238026315
GI number: 238026315
Start: 692215
End: 693642
Strand: Reverse
Name: xanB [H]
Synonym: bglu_1g06490
Alternate gene names: 238026315
Gene position: 693642-692215 (Counterclockwise)
Preceding gene: 238026316
Following gene: 238026314
Centisome position: 17.76
GC content: 64.5
Gene sequence:
>1428_bases ATGAGCATCTTTCCGGTAATTTTGTGCGGTGGCAGTGGTACGCGACTCTGGCCGATGTCGCGCGGCGGATATCCCAAGCA GTATCTCAAGCTGACCGGCGACGATACGCTGATCCAGCAGACAGCCCTGCGCGTGCGTCATTTGCCGGATGCGACCAAAC CCATCATCCTGACCAACAACGAGCAACGCTTCCTGGTCGCCGAGCAACTGCGGCAGGTCGGCATCGAACCGTCGTCGATC GTCCTGGAACCCGTCGGCCGCAACACCGCACCCGCGATCGCGGTGGCCGCGCACATGGCCCTCAAGGAGTCGCCGGACGC GCTGCTGCTGGTCCTGCCTTCCGACCACGCCATCCTGAACCAGGCCGCCTTCGCTGCGGCGGCGCAAGCCGCGGCAGCGG TCGCGAGCGAAGGCTGCCTGGTCACCTTCGGCATCCCCCCCGACCGCGCACATACGGGATTCGGCTATATCCACCGGGGC AAGCCGTTCGACGATGAGGCGCAGGCCCACCGCGTGGACGCCTTTGTCGAAAAACCCGACATGGCGACCGCGGAGGAATT CGTAAAATCGGGCGAATACTACTGGAACAGCGGCATGTTCATGCTGAAGGCATCGACCTACCTGCAGGAACTGCAGCGGT TCGAGCCCGAGATCGCACGGCTGTCGCAAGCGGCGCTCGAGGGCGCGTCGCACGACAACGATTTCATCCGACTCGATCCG GTCGCCTTCGCGGCAAGCCCCAACATCTCGATCGACTACGCCGTGATGGAAAGGACCGAGCATGCCGCCGTCGTCGCCAC CGATAACCTCGGCTGGAACGACATCGGCTCGTGGGGCGCCCTGGCCGATCTCGCCAAGACCGACGAGGACGGCAACACCC TGATCGGCGACGTGTTCTGCGAATCGACCAGCAACTCGTACGTCCGCGCCGAACACCGCATGGTAGCCACGATCGGGGTC GACAACCTGGTCGTCGTCGAAACTGCCGATGCCGTCCTGGTGGTCCATCGCGATCACGTGCAGGACGTCAAGAAAGTGGT CGAACAACTCAATAAATCCGGCCGTCACGAGTCCGTCACGCACCGCCGCGTGGTCCGCCCGTGGGGCGACTACGAGGGCA TCGACCAGGGCGACCGGTTCCAGGTCAAGCGCATCGTCGTCAAGCCGGGCGCGCAGCTGAGCCTGCAGATGCACCATCAC CGCGCCGAGCACTGGATCGTCGTGAAGGGCACCGCGCTCGTGACGAACGGCGACAGGGAGATCATGCTGACCGAGAACCA GTCGACCTACATCCCGCTCGGCGCGACGCACCGCCTGAGCAACCCCGGCAAGATCCCGCTCGAGCTGATCGAGGTGCAGT CGGGTGCCTACCTCGGCGAGGACGATATCGTCCGCTTCGAGGACACCTACGGCCGCGCGCCGAAGTAA
Upstream 100 bases:
>100_bases AATTCATTCGTATGACGCATTGAATGAGACTTGCGTTGCAAAAAACAACGCACCTGGACAATCCGCAATCGTTGGCAGCA TTTCCATCTGAGATTCAGAC
Downstream 100 bases:
>100_bases GCCGGGCAGCGGCGCGAAGGCCAGCGAAGGCCTTCGAAAACGCGCCGCCATCGGCCACGCGAGCCGCTTCGCAGGCTATG CGCAAGGCCAGCGGCGGCCG
Product: putative GDP-mannose pyrophosphorylase
Products: NA
Alternate protein names: Mannose-6-phosphate isomerase; Phosphohexomutase; Phosphomannose isomerase; PMI; Mannose-1-phosphate guanylyl transferase; GDP-mannose pyrophosphorylase; GMP; GMPP [H]
Number of amino acids: Translated: 475; Mature: 474
Protein sequence:
>475_residues MSIFPVILCGGSGTRLWPMSRGGYPKQYLKLTGDDTLIQQTALRVRHLPDATKPIILTNNEQRFLVAEQLRQVGIEPSSI VLEPVGRNTAPAIAVAAHMALKESPDALLLVLPSDHAILNQAAFAAAAQAAAAVASEGCLVTFGIPPDRAHTGFGYIHRG KPFDDEAQAHRVDAFVEKPDMATAEEFVKSGEYYWNSGMFMLKASTYLQELQRFEPEIARLSQAALEGASHDNDFIRLDP VAFAASPNISIDYAVMERTEHAAVVATDNLGWNDIGSWGALADLAKTDEDGNTLIGDVFCESTSNSYVRAEHRMVATIGV DNLVVVETADAVLVVHRDHVQDVKKVVEQLNKSGRHESVTHRRVVRPWGDYEGIDQGDRFQVKRIVVKPGAQLSLQMHHH RAEHWIVVKGTALVTNGDREIMLTENQSTYIPLGATHRLSNPGKIPLELIEVQSGAYLGEDDIVRFEDTYGRAPK
Sequences:
>Translated_475_residues MSIFPVILCGGSGTRLWPMSRGGYPKQYLKLTGDDTLIQQTALRVRHLPDATKPIILTNNEQRFLVAEQLRQVGIEPSSI VLEPVGRNTAPAIAVAAHMALKESPDALLLVLPSDHAILNQAAFAAAAQAAAAVASEGCLVTFGIPPDRAHTGFGYIHRG KPFDDEAQAHRVDAFVEKPDMATAEEFVKSGEYYWNSGMFMLKASTYLQELQRFEPEIARLSQAALEGASHDNDFIRLDP VAFAASPNISIDYAVMERTEHAAVVATDNLGWNDIGSWGALADLAKTDEDGNTLIGDVFCESTSNSYVRAEHRMVATIGV DNLVVVETADAVLVVHRDHVQDVKKVVEQLNKSGRHESVTHRRVVRPWGDYEGIDQGDRFQVKRIVVKPGAQLSLQMHHH RAEHWIVVKGTALVTNGDREIMLTENQSTYIPLGATHRLSNPGKIPLELIEVQSGAYLGEDDIVRFEDTYGRAPK >Mature_474_residues SIFPVILCGGSGTRLWPMSRGGYPKQYLKLTGDDTLIQQTALRVRHLPDATKPIILTNNEQRFLVAEQLRQVGIEPSSIV LEPVGRNTAPAIAVAAHMALKESPDALLLVLPSDHAILNQAAFAAAAQAAAAVASEGCLVTFGIPPDRAHTGFGYIHRGK PFDDEAQAHRVDAFVEKPDMATAEEFVKSGEYYWNSGMFMLKASTYLQELQRFEPEIARLSQAALEGASHDNDFIRLDPV AFAASPNISIDYAVMERTEHAAVVATDNLGWNDIGSWGALADLAKTDEDGNTLIGDVFCESTSNSYVRAEHRMVATIGVD NLVVVETADAVLVVHRDHVQDVKKVVEQLNKSGRHESVTHRRVVRPWGDYEGIDQGDRFQVKRIVVKPGAQLSLQMHHHR AEHWIVVKGTALVTNGDREIMLTENQSTYIPLGATHRLSNPGKIPLELIEVQSGAYLGEDDIVRFEDTYGRAPK
Specific function: Involved in xanthan production [H]
COG id: COG0836
COG function: function code M; Mannose-1-phosphate guanylyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the mannose-6-phosphate isomerase type 2 family [H]
Homologues:
Organism=Escherichia coli, GI1788362, Length=476, Percent_Identity=55.2521008403361, Blast_Score=503, Evalue=1e-144,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011051 - InterPro: IPR006375 - InterPro: IPR001538 - InterPro: IPR005835 - InterPro: IPR014710 [H]
Pfam domain/function: PF01050 MannoseP_isomer; PF00483 NTP_transferase [H]
EC number: =5.3.1.8; =2.7.7.13 [H]
Molecular weight: Translated: 52180; Mature: 52048
Theoretical pI: Translated: 5.67; Mature: 5.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIFPVILCGGSGTRLWPMSRGGYPKQYLKLTGDDTLIQQTALRVRHLPDATKPIILTNN CCEEEEEEECCCCCEEEECCCCCCCHHHEEECCCHHHHHHHHHHHHCCCCCCCCEEEECC EQRFLVAEQLRQVGIEPSSIVLEPVGRNTAPAIAVAAHMALKESPDALLLVLPSDHAILN CCEEHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCHHHH QAAFAAAAQAAAAVASEGCLVTFGIPPDRAHTGFGYIHRGKPFDDEAQAHRVDAFVEKPD HHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCC MATAEEFVKSGEYYWNSGMFMLKASTYLQELQRFEPEIARLSQAALEGASHDNDFIRLDP CHHHHHHHHCCCEEECCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCEEEECC VAFAASPNISIDYAVMERTEHAAVVATDNLGWNDIGSWGALADLAKTDEDGNTLIGDVFC EEEECCCCCEEEEHEECCCCCEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCEEEEEEEE ESTSNSYVRAEHRMVATIGVDNLVVVETADAVLVVHRDHVQDVKKVVEQLNKSGRHESVT CCCCCCEEEECCEEEEEECCCCEEEEEECCEEEEEECHHHHHHHHHHHHHHHCCCCCCHH HRRVVRPWGDYEGIDQGDRFQVKRIVVKPGAQLSLQMHHHRAEHWIVVKGTALVTNGDRE HHHHCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEEECCCCCEEEEEECEEEEECCCCE IMLTENQSTYIPLGATHRLSNPGKIPLELIEVQSGAYLGEDDIVRFEDTYGRAPK EEEECCCCEEEECCCCCCCCCCCCCCEEEEEECCCCEECCCCEEEEECCCCCCCC >Mature Secondary Structure SIFPVILCGGSGTRLWPMSRGGYPKQYLKLTGDDTLIQQTALRVRHLPDATKPIILTNN CEEEEEEECCCCCEEEECCCCCCCHHHEEECCCHHHHHHHHHHHHCCCCCCCCEEEECC EQRFLVAEQLRQVGIEPSSIVLEPVGRNTAPAIAVAAHMALKESPDALLLVLPSDHAILN CCEEHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCHHHH QAAFAAAAQAAAAVASEGCLVTFGIPPDRAHTGFGYIHRGKPFDDEAQAHRVDAFVEKPD HHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCC MATAEEFVKSGEYYWNSGMFMLKASTYLQELQRFEPEIARLSQAALEGASHDNDFIRLDP CHHHHHHHHCCCEEECCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCEEEECC VAFAASPNISIDYAVMERTEHAAVVATDNLGWNDIGSWGALADLAKTDEDGNTLIGDVFC EEEECCCCCEEEEHEECCCCCEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCEEEEEEEE ESTSNSYVRAEHRMVATIGVDNLVVVETADAVLVVHRDHVQDVKKVVEQLNKSGRHESVT CCCCCCEEEECCEEEEEECCCCEEEEEECCEEEEEECHHHHHHHHHHHHHHHCCCCCCHH HRRVVRPWGDYEGIDQGDRFQVKRIVVKPGAQLSLQMHHHRAEHWIVVKGTALVTNGDRE HHHHCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEEECCCCCEEEEEECEEEEECCCCE IMLTENQSTYIPLGATHRLSNPGKIPLELIEVQSGAYLGEDDIVRFEDTYGRAPK EEEECCCCEEEECCCCCCCCCCCCCCEEEEEECCCCEECCCCEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1370280; 11589581 [H]