| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is miaA [H]
Identifier: 238026310
GI number: 238026310
Start: 686147
End: 687115
Strand: Reverse
Name: miaA [H]
Synonym: bglu_1g06440
Alternate gene names: 238026310
Gene position: 687115-686147 (Counterclockwise)
Preceding gene: 238026311
Following gene: 238026308
Centisome position: 17.59
GC content: 73.99
Gene sequence:
>969_bases ATGAGCGGCGCACCCGAATCGCCCCGCGTCACCGTCGCCTGCCTGCTCGGCCCCACCGCCTCGGGCAAGACCGCCGCGGC GCTGGCGCTGGCCGAGCGGCGGCCGGTGGAGATCGTCAGCGTCGATTCGGCGCTCGTCTATCGCGAGATGGATATCGGCA CCGCGAAGCCGGAGCGCGCCGAACGCGAGCGCGTGGCGCATCATCTGATCGACATCCGCGACCCGCGCGAGGCCTATTCG GCCGCCGAGTTCCGCGCCGACACGCTGCGCCTGCTGGGCGAGATCCTCGCGCGCGGACACACGCCGCTGCTGGCGGGCGG GACCATGCTGTACTACAAGGCGCTGACGCAGGGGCTCAATGCGCTACCGGCCGCCGATCCGCAGGTGCGCGCGCGGCTCG ACGCCGACGCCGCGCGCGACGGCTGGCCGGCGCTGCATGCGCGGCTCGCACGGGCCGACCCGGAAACCGCCGCGCGGCTG GCGCCGAACGACGCGCAGCGCATCCAGCGTGCGCTCGAAATCCTCGAACTGAGCGGCCGGCCCATGTCGGCGCTGCTCGC CGCACCGCCGCCAGCCTGCGACGAGGCGGCCCGCTACCGCTTCGTGCCGGTGGCGCTGGAGCCGTCCGAGCGCGCCGTGC TGCATGCGCGGATCGCGGTGCGCTTCGACGCGATGCTCGCGGCCGGCTTCGTCGACGAGGTGGAACGGCTGCGCGGGCGC GGCGACCTGCATCTGGGCCTGCCGTCGATGCGCTGCGTGGGCTACCGGCAGGCCTGGGAATATCTCGACGGCGCCACCGA CCACGCCACGATGCGCGACAAGGGCATATTCGCCACGCGCCAGCTCTGCAAGCGGCAGCTGACCTGGCTGCGCTCGATGC CGGAGCGCATCGTGGTGGACTGCTGCGCCGATGACGCGCCGCGGCGCGCCGTGGCCGCGCTTGAGCGCGTGCTCGACGCG GCGCCCTGA
Upstream 100 bases:
>100_bases AGATGGAGGCCACCGAGCGCGCCGACCAGTGCAACCACGGCCGGCCGACCTGGTACCAGCTCACGCTCGGCGATCTCGAC CGCCTGTTCATGCGCGGCCA
Downstream 100 bases:
>100_bases ACGCGTCCGCGCCAGGCAACAAAAAAGGCCGCGCTCCGCGGCCCTTCCTGCTGCACGGCACGAGCGCCGTGCCACCGATC CTCCTGCTGCGCCAGCCTCA
Product: tRNA delta(2)-isopentenylpyrophosphate transferase
Products: NA
Alternate protein names: Dimethylallyl diphosphate:tRNA dimethylallyltransferase; DMAPP:tRNA dimethylallyltransferase; DMATase; Isopentenyl-diphosphate:tRNA isopentenyltransferase; IPP transferase; IPPT; IPTase [H]
Number of amino acids: Translated: 322; Mature: 321
Protein sequence:
>322_residues MSGAPESPRVTVACLLGPTASGKTAAALALAERRPVEIVSVDSALVYREMDIGTAKPERAERERVAHHLIDIRDPREAYS AAEFRADTLRLLGEILARGHTPLLAGGTMLYYKALTQGLNALPAADPQVRARLDADAARDGWPALHARLARADPETAARL APNDAQRIQRALEILELSGRPMSALLAAPPPACDEAARYRFVPVALEPSERAVLHARIAVRFDAMLAAGFVDEVERLRGR GDLHLGLPSMRCVGYRQAWEYLDGATDHATMRDKGIFATRQLCKRQLTWLRSMPERIVVDCCADDAPRRAVAALERVLDA AP
Sequences:
>Translated_322_residues MSGAPESPRVTVACLLGPTASGKTAAALALAERRPVEIVSVDSALVYREMDIGTAKPERAERERVAHHLIDIRDPREAYS AAEFRADTLRLLGEILARGHTPLLAGGTMLYYKALTQGLNALPAADPQVRARLDADAARDGWPALHARLARADPETAARL APNDAQRIQRALEILELSGRPMSALLAAPPPACDEAARYRFVPVALEPSERAVLHARIAVRFDAMLAAGFVDEVERLRGR GDLHLGLPSMRCVGYRQAWEYLDGATDHATMRDKGIFATRQLCKRQLTWLRSMPERIVVDCCADDAPRRAVAALERVLDA AP >Mature_321_residues SGAPESPRVTVACLLGPTASGKTAAALALAERRPVEIVSVDSALVYREMDIGTAKPERAERERVAHHLIDIRDPREAYSA AEFRADTLRLLGEILARGHTPLLAGGTMLYYKALTQGLNALPAADPQVRARLDADAARDGWPALHARLARADPETAARLA PNDAQRIQRALEILELSGRPMSALLAAPPPACDEAARYRFVPVALEPSERAVLHARIAVRFDAMLAAGFVDEVERLRGRG DLHLGLPSMRCVGYRQAWEYLDGATDHATMRDKGIFATRQLCKRQLTWLRSMPERIVVDCCADDAPRRAVAALERVLDAA P
Specific function: Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) [H]
COG id: COG0324
COG function: function code J; tRNA delta(2)-isopentenylpyrophosphate transferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the IPP transferase family [H]
Homologues:
Organism=Homo sapiens, GI31581534, Length=311, Percent_Identity=29.5819935691318, Blast_Score=119, Evalue=5e-27, Organism=Escherichia coli, GI1790613, Length=277, Percent_Identity=53.7906137184115, Blast_Score=292, Evalue=2e-80, Organism=Caenorhabditis elegans, GI25144712, Length=277, Percent_Identity=27.4368231046931, Blast_Score=100, Evalue=1e-21, Organism=Saccharomyces cerevisiae, GI6324848, Length=294, Percent_Identity=26.530612244898, Blast_Score=119, Evalue=8e-28, Organism=Drosophila melanogaster, GI24649830, Length=241, Percent_Identity=31.9502074688797, Blast_Score=121, Evalue=8e-28,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002627 - InterPro: IPR018022 [H]
Pfam domain/function: PF01715 IPPT [H]
EC number: =2.5.1.75 [H]
Molecular weight: Translated: 35129; Mature: 34998
Theoretical pI: Translated: 7.85; Mature: 7.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGAPESPRVTVACLLGPTASGKTAAALALAERRPVEIVSVDSALVYREMDIGTAKPERA CCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCEEEEEECHHHHEEECCCCCCCCHHH ERERVAHHLIDIRDPREAYSAAEFRADTLRLLGEILARGHTPLLAGGTMLYYKALTQGLN HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHH ALPAADPQVRARLDADAARDGWPALHARLARADPETAARLAPNDAQRIQRALEILELSGR CCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHCCCC PMSALLAAPPPACDEAARYRFVPVALEPSERAVLHARIAVRFDAMLAAGFVDEVERLRGR CHHHHHCCCCCCCCHHHCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC GDLHLGLPSMRCVGYRQAWEYLDGATDHATMRDKGIFATRQLCKRQLTWLRSMPERIVVD CCEEECCCCHHHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHH CCADDAPRRAVAALERVLDAAP HCCCCCHHHHHHHHHHHHHCCC >Mature Secondary Structure SGAPESPRVTVACLLGPTASGKTAAALALAERRPVEIVSVDSALVYREMDIGTAKPERA CCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCEEEEEECHHHHEEECCCCCCCCHHH ERERVAHHLIDIRDPREAYSAAEFRADTLRLLGEILARGHTPLLAGGTMLYYKALTQGLN HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHH ALPAADPQVRARLDADAARDGWPALHARLARADPETAARLAPNDAQRIQRALEILELSGR CCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHCCCC PMSALLAAPPPACDEAARYRFVPVALEPSERAVLHARIAVRFDAMLAAGFVDEVERLRGR CHHHHHCCCCCCCCHHHCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC GDLHLGLPSMRCVGYRQAWEYLDGATDHATMRDKGIFATRQLCKRQLTWLRSMPERIVVD CCEEECCCCHHHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHH CCADDAPRRAVAALERVLDAAP HCCCCCHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA