| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is hmp [H]
Identifier: 238026287
GI number: 238026287
Start: 654732
End: 655940
Strand: Direct
Name: hmp [H]
Synonym: bglu_1g06210
Alternate gene names: 238026287
Gene position: 654732-655940 (Clockwise)
Preceding gene: 238026286
Following gene: 238026292
Centisome position: 16.76
GC content: 70.55
Gene sequence:
>1209_bases ATGACGACGCTCACCGCCGAGCAGATGGACCGTGTCAAGGCAAGCGCCCCAATGCTTGCCGCCGAAGGGCCGAAGATCGC GCGGCACTTCTATCAGCGGATGTTCCGTCGCCATCCCGAATTGCGAAACCTGTTCAACCAATCGCATCAGAAGGCGGGCG GCGGCCAGCCCGAGGCGCTGGCGCGGGCGGTGTGGGCATACGCCGCGAACATCGACAATCTCGGCGCGCTCGGCGGCGCG GTCTCGCGCATCGCGCACAAGCACGTGAGCCTGTCGGTGCGGCCCGAGCATTACCCGATCGTCGGTGACAACCTGCTGGC CGCGATCGTCGAGGTGCTCGGCGAGGCGGTCGATGCGCCGACGCTCGACGCATGGCGGGCCGCCTATGCGCAGCTCGCGC AGATCCTGACCGGGGTCGAGGCGCGGCTCTACGCGCAGGCGCCGTGGACCGGCTACCGGCCGTTCCGGGTCGAGCGCAAG CAGCGCGAGAGCGACGAGATCACCTCGTTCTATCTGACGCCCACCGACGGCGGCGTCGCGCCGCACTTCGAACCGGGCCA GTACGTCTCGGTCAAGCGCTACATCGGCGCGCTCGGCGTCGACCAGCCGCGCCAGTACAGCCTGTCGGACCTGCCGAACG GCAAGTGGCTGCGGATCTCGGTGAAGCGCGAGGCGGGGCGCGGCGCCGAGCTGCCGGCCGGCAAGATGTCGACGCTGCTG CACGACGGCGTCGAGCAAGGGGCGATCGTCGAGGTGTCGGCGCCGATGGGCGACTTCACGCTGGCGCGCGAGGCCGACAC GCCGGTGGTGCTGATTTCGGGGGGAGTCGGCATCACGCCGATGGTGTCGATGGCCTCGGCGCTGGCCGCGGCCGGCAGCC GGCGGCCGCTCCATTTCCTGCACGCCTGCCGCTCGGGCCGTGCCCATGCGTTTCGCGACTGGCTCAACGCGCTGGTGGCG AGCCGCCCGAACACCACGCGCCAGGTACTTTACGAGACCGTCGGCCCGAACGACGAGGCCGGCGTCGATCACGACCGCGA GGGGCGGCTCACGCCGGCCGAACTGGACGCGGCGATGCTGCCCGATGCCGACTACTACGTCTGCGGGCCGGTAGGCTTCA TGACCGCGCAGCGCGAGACGCTGCTGGCGCGCGGCGTCGAGCCGGCGCGCGTGCATACCGAGATCTTCGGTTCGGGCGCG TTGGCGTGA
Upstream 100 bases:
>100_bases GCAGGGTCGCCGCAACTGCGGCAATTCGCCCATCTCAATATTCGGCTTTAAAAATGTATCGTGTATGAATCTTTAAACCG ACCGCCGATGGAGAAGAACG
Downstream 100 bases:
>100_bases GGCGGTGTGCTGCGGGGAGGGCCGGTTCGCCGCGAGGCGGTCCGGCCCTTCGTGCTTGAGGGCTTCGGGCGCCGGCCTCA GTTGCCGCTGCCGCGGGCCA
Product: Globin
Products: NA
Alternate protein names: Flavohemoglobin; Hemoglobin-like protein; Nitric oxide dioxygenase; NO oxygenase; NOD [H]
Number of amino acids: Translated: 402; Mature: 401
Protein sequence:
>402_residues MTTLTAEQMDRVKASAPMLAAEGPKIARHFYQRMFRRHPELRNLFNQSHQKAGGGQPEALARAVWAYAANIDNLGALGGA VSRIAHKHVSLSVRPEHYPIVGDNLLAAIVEVLGEAVDAPTLDAWRAAYAQLAQILTGVEARLYAQAPWTGYRPFRVERK QRESDEITSFYLTPTDGGVAPHFEPGQYVSVKRYIGALGVDQPRQYSLSDLPNGKWLRISVKREAGRGAELPAGKMSTLL HDGVEQGAIVEVSAPMGDFTLAREADTPVVLISGGVGITPMVSMASALAAAGSRRPLHFLHACRSGRAHAFRDWLNALVA SRPNTTRQVLYETVGPNDEAGVDHDREGRLTPAELDAAMLPDADYYVCGPVGFMTAQRETLLARGVEPARVHTEIFGSGA LA
Sequences:
>Translated_402_residues MTTLTAEQMDRVKASAPMLAAEGPKIARHFYQRMFRRHPELRNLFNQSHQKAGGGQPEALARAVWAYAANIDNLGALGGA VSRIAHKHVSLSVRPEHYPIVGDNLLAAIVEVLGEAVDAPTLDAWRAAYAQLAQILTGVEARLYAQAPWTGYRPFRVERK QRESDEITSFYLTPTDGGVAPHFEPGQYVSVKRYIGALGVDQPRQYSLSDLPNGKWLRISVKREAGRGAELPAGKMSTLL HDGVEQGAIVEVSAPMGDFTLAREADTPVVLISGGVGITPMVSMASALAAAGSRRPLHFLHACRSGRAHAFRDWLNALVA SRPNTTRQVLYETVGPNDEAGVDHDREGRLTPAELDAAMLPDADYYVCGPVGFMTAQRETLLARGVEPARVHTEIFGSGA LA >Mature_401_residues TTLTAEQMDRVKASAPMLAAEGPKIARHFYQRMFRRHPELRNLFNQSHQKAGGGQPEALARAVWAYAANIDNLGALGGAV SRIAHKHVSLSVRPEHYPIVGDNLLAAIVEVLGEAVDAPTLDAWRAAYAQLAQILTGVEARLYAQAPWTGYRPFRVERKQ RESDEITSFYLTPTDGGVAPHFEPGQYVSVKRYIGALGVDQPRQYSLSDLPNGKWLRISVKREAGRGAELPAGKMSTLLH DGVEQGAIVEVSAPMGDFTLAREADTPVVLISGGVGITPMVSMASALAAAGSRRPLHFLHACRSGRAHAFRDWLNALVAS RPNTTRQVLYETVGPNDEAGVDHDREGRLTPAELDAAMLPDADYYVCGPVGFMTAQRETLLARGVEPARVHTEIFGSGAL A
Specific function: Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a centra
COG id: COG1018
COG function: function code C; Flavodoxin reductases (ferredoxin-NADPH reductases) family 1
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 FAD-binding FR-type domain [H]
Homologues:
Organism=Escherichia coli, GI1788903, Length=400, Percent_Identity=41.75, Blast_Score=290, Evalue=1e-79, Organism=Saccharomyces cerevisiae, GI6321673, Length=396, Percent_Identity=35.8585858585859, Blast_Score=228, Evalue=1e-60,
Paralogues:
None
Copy number: 100 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017927 - InterPro: IPR012292 - InterPro: IPR009050 - InterPro: IPR000971 - InterPro: IPR008333 - InterPro: IPR001433 - InterPro: IPR017938 [H]
Pfam domain/function: PF00970 FAD_binding_6; PF00042 Globin; PF00175 NAD_binding_1 [H]
EC number: =1.14.12.17 [H]
Molecular weight: Translated: 43561; Mature: 43430
Theoretical pI: Translated: 7.47; Mature: 7.47
Prosite motif: PS00018 EF_HAND_1 ; PS01033 GLOBIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTLTAEQMDRVKASAPMLAAEGPKIARHFYQRMFRRHPELRNLFNQSHQKAGGGQPEAL CCCCCHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHH ARAVWAYAANIDNLGALGGAVSRIAHKHVSLSVRPEHYPIVGDNLLAAIVEVLGEAVDAP HHHHHHHHHCCCCHHHHHHHHHHHHHHHEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCC TLDAWRAAYAQLAQILTGVEARLYAQAPWTGYRPFRVERKQRESDEITSFYLTPTDGGVA CHHHHHHHHHHHHHHHHCHHHEEEEECCCCCCCCCCHHHHHCCCCCCEEEEEECCCCCCC PHFEPGQYVSVKRYIGALGVDQPRQYSLSDLPNGKWLRISVKREAGRGAELPAGKMSTLL CCCCCCCEEEHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHH HDGVEQGAIVEVSAPMGDFTLAREADTPVVLISGGVGITPMVSMASALAAAGSRRPLHFL HHCCCCCCEEEEECCCCCEEEEECCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCHHHH HACRSGRAHAFRDWLNALVASRPNTTRQVLYETVGPNDEAGVDHDREGRLTPAELDAAML HHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHCCHHHC PDADYYVCGPVGFMTAQRETLLARGVEPARVHTEIFGSGALA CCCCEEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCC >Mature Secondary Structure TTLTAEQMDRVKASAPMLAAEGPKIARHFYQRMFRRHPELRNLFNQSHQKAGGGQPEAL CCCCHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHH ARAVWAYAANIDNLGALGGAVSRIAHKHVSLSVRPEHYPIVGDNLLAAIVEVLGEAVDAP HHHHHHHHHCCCCHHHHHHHHHHHHHHHEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCC TLDAWRAAYAQLAQILTGVEARLYAQAPWTGYRPFRVERKQRESDEITSFYLTPTDGGVA CHHHHHHHHHHHHHHHHCHHHEEEEECCCCCCCCCCHHHHHCCCCCCEEEEEECCCCCCC PHFEPGQYVSVKRYIGALGVDQPRQYSLSDLPNGKWLRISVKREAGRGAELPAGKMSTLL CCCCCCCEEEHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHH HDGVEQGAIVEVSAPMGDFTLAREADTPVVLISGGVGITPMVSMASALAAAGSRRPLHFL HHCCCCCCEEEEECCCCCEEEEECCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCHHHH HACRSGRAHAFRDWLNALVASRPNTTRQVLYETVGPNDEAGVDHDREGRLTPAELDAAML HHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHCCHHHC PDADYYVCGPVGFMTAQRETLLARGVEPARVHTEIFGSGALA CCCCEEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 14500782 [H]