Click here to switch to the map view.

The map label for this gene is oxyR [H]

Identifier: 238026277

GI number: 238026277

Start: 643024

End: 643983

Strand: Direct

Name: oxyR [H]

Synonym: bglu_1g06100

Alternate gene names: 238026277

Gene position: 643024-643983 (Clockwise)

Preceding gene: 238026276

Following gene: 238026278

Centisome position: 16.46

GC content: 65.83

Gene sequence:

>960_bases
ATGACGCTTACTGAACTCAAATATATCGTCGCGGTCGCACGCGAGCGGCATTTCGGCCGCGCGGCCGAAGCGTGCTTCGT
AAGCCAGCCCACGCTATCGGTCGCGATCAAGAAGCTCGAGGACGAGCTGAACGTGCAGATCTTCGAACGCGGCGCGAGCG
AGGTGAGCGTGACGCCGATCGGCGACCAGATCGTCACGCAGGCGCAGCGCGTGCTCGAACAGACCTTCGCGATCAAGGAG
ATCGCCAAGCAGGGCAAGGACCCGCTGGTCGGCCCGTTCCGGCTCGGCGTGATCTACACGATCGGGCCGTACCTGCTGCC
CACGCTCGTCAAGCAGATGATCCGCCGCGTGCCGCAAATGCCGCTGATGCTGCAGGAGAACTACACGCTCAAGCTGCTCG
AGCTGCTCAAGCAGGGCGAGATCGACGCGGCGATCATGGCGCTGCCGTTCCCCGAGACCGGGCTGATGGTGCGCCCGCTC
TACGACGAGCCGTTCGTGGTCGCGCTGCCGTCGAGCCATCCGTGGTCGAAGCGCCGCAAGATCGACGCGGCCGACCTCAA
GCAGGAAACCATGCTGCTGCTCGGCAACGGCCATTGCTTTCGCGACCACGTGCTCGGCGTCTGTCCCGAGCTGATGCACT
TCTCGCAGACGGCCGACGGCATCCAGAAGACCTTCGAGGGCTCGTCGCTGGAAACGATCCGCCACATGGTGGCGAGCGGC
GTCGGGATCACCGTGCTGCCGCGCATGTCGGTGGCCGAGATCGGGCCCACCGCCAACAACAGCGATTCGGACCTGCTGTC
CTACGTGCCGTTCGACGAGCCGGTGCCGGACCGCCGCGTGGTGCTGGTGTGGCGCAAGAGCTTCACGCGCATGCCGGCGA
TCGACGCGATCAGCGAGGCGATCTCGGCCTGCGTGCTGCCCGGCGTTGCCAAGCTCGACATGCCCGCCACGCTGAACTGA

Upstream 100 bases:

>100_bases
GCCATCTGCCGCCAAATATGACACCGAAGATGGTTGGCGAAATGGGCCTATCCGGTGTATAAATTAAAGCTATCGTTTGC
ATTTACTTGATTGACCCACA

Downstream 100 bases:

>100_bases
GCGCGACGCGCGAGACCGGGGCCGAGCGCCCCGGTTTTATTTTGCCTATCGAATACATAAATTCAATCAAATATAAAAAT
TCGATAGAATTTTTTATGAT

Product: oxidative stress regulatory protein OxyR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 318

Protein sequence:

>319_residues
MTLTELKYIVAVARERHFGRAAEACFVSQPTLSVAIKKLEDELNVQIFERGASEVSVTPIGDQIVTQAQRVLEQTFAIKE
IAKQGKDPLVGPFRLGVIYTIGPYLLPTLVKQMIRRVPQMPLMLQENYTLKLLELLKQGEIDAAIMALPFPETGLMVRPL
YDEPFVVALPSSHPWSKRRKIDAADLKQETMLLLGNGHCFRDHVLGVCPELMHFSQTADGIQKTFEGSSLETIRHMVASG
VGITVLPRMSVAEIGPTANNSDSDLLSYVPFDEPVPDRRVVLVWRKSFTRMPAIDAISEAISACVLPGVAKLDMPATLN

Sequences:

>Translated_319_residues
MTLTELKYIVAVARERHFGRAAEACFVSQPTLSVAIKKLEDELNVQIFERGASEVSVTPIGDQIVTQAQRVLEQTFAIKE
IAKQGKDPLVGPFRLGVIYTIGPYLLPTLVKQMIRRVPQMPLMLQENYTLKLLELLKQGEIDAAIMALPFPETGLMVRPL
YDEPFVVALPSSHPWSKRRKIDAADLKQETMLLLGNGHCFRDHVLGVCPELMHFSQTADGIQKTFEGSSLETIRHMVASG
VGITVLPRMSVAEIGPTANNSDSDLLSYVPFDEPVPDRRVVLVWRKSFTRMPAIDAISEAISACVLPGVAKLDMPATLN
>Mature_318_residues
TLTELKYIVAVARERHFGRAAEACFVSQPTLSVAIKKLEDELNVQIFERGASEVSVTPIGDQIVTQAQRVLEQTFAIKEI
AKQGKDPLVGPFRLGVIYTIGPYLLPTLVKQMIRRVPQMPLMLQENYTLKLLELLKQGEIDAAIMALPFPETGLMVRPLY
DEPFVVALPSSHPWSKRRKIDAADLKQETMLLLGNGHCFRDHVLGVCPELMHFSQTADGIQKTFEGSSLETIRHMVASGV
GITVLPRMSVAEIGPTANNSDSDLLSYVPFDEPVPDRRVVLVWRKSFTRMPAIDAISEAISACVLPGVAKLDMPATLN

Specific function: Required for the induction of a regulon of hydrogen peroxide inducible genes such as catalase and glutathione- reductase [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790399, Length=303, Percent_Identity=39.9339933993399, Blast_Score=219, Evalue=1e-58,
Organism=Escherichia coli, GI157672245, Length=311, Percent_Identity=26.3665594855305, Blast_Score=101, Evalue=6e-23,
Organism=Escherichia coli, GI1787530, Length=261, Percent_Identity=27.5862068965517, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI2367136, Length=242, Percent_Identity=28.9256198347107, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1788748, Length=311, Percent_Identity=26.6881028938907, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1788887, Length=292, Percent_Identity=27.7397260273973, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI145693105, Length=300, Percent_Identity=26.6666666666667, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI1787879, Length=301, Percent_Identity=25.9136212624585, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI87081904, Length=176, Percent_Identity=32.9545454545455, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1787601, Length=182, Percent_Identity=26.3736263736264, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1787806, Length=297, Percent_Identity=23.2323232323232, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788481, Length=252, Percent_Identity=26.1904761904762, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1790262, Length=259, Percent_Identity=25.8687258687259, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786401, Length=247, Percent_Identity=25.5060728744939, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1788296, Length=177, Percent_Identity=26.5536723163842, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35304; Mature: 35173

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLTELKYIVAVARERHFGRAAEACFVSQPTLSVAIKKLEDELNVQIFERGASEVSVTPI
CCHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHCHHHEECCCCEEEECCC
GDQIVTQAQRVLEQTFAIKEIAKQGKDPLVGPFRLGVIYTIGPYLLPTLVKQMIRRVPQM
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PLMLQENYTLKLLELLKQGEIDAAIMALPFPETGLMVRPLYDEPFVVALPSSHPWSKRRK
CEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCEEEECCCCCEEEECCCCCCHHHHHC
IDAADLKQETMLLLGNGHCFRDHVLGVCPELMHFSQTADGIQKTFEGSSLETIRHMVASG
CCHHHHCHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
VGITVLPRMSVAEIGPTANNSDSDLLSYVPFDEPVPDRRVVLVWRKSFTRMPAIDAISEA
CCEEEECCCHHHHCCCCCCCCCCCCEEECCCCCCCCCCEEEEEEEHHCCCCCHHHHHHHH
ISACVLPGVAKLDMPATLN
HHHHHCCCCHHCCCCCCCC
>Mature Secondary Structure 
TLTELKYIVAVARERHFGRAAEACFVSQPTLSVAIKKLEDELNVQIFERGASEVSVTPI
CHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHCHHHEECCCCEEEECCC
GDQIVTQAQRVLEQTFAIKEIAKQGKDPLVGPFRLGVIYTIGPYLLPTLVKQMIRRVPQM
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PLMLQENYTLKLLELLKQGEIDAAIMALPFPETGLMVRPLYDEPFVVALPSSHPWSKRRK
CEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCEEEECCCCCEEEECCCCCCHHHHHC
IDAADLKQETMLLLGNGHCFRDHVLGVCPELMHFSQTADGIQKTFEGSSLETIRHMVASG
CCHHHHCHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
VGITVLPRMSVAEIGPTANNSDSDLLSYVPFDEPVPDRRVVLVWRKSFTRMPAIDAISEA
CCEEEECCCHHHHCCCCCCCCCCCCEEECCCCCCCCCCEEEEEEEHHCCCCCHHHHHHHH
ISACVLPGVAKLDMPATLN
HHHHHCCCCHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA