| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is tgt [H]
Identifier: 238026274
GI number: 238026274
Start: 637900
End: 639120
Strand: Reverse
Name: tgt [H]
Synonym: bglu_1g06070
Alternate gene names: 238026274
Gene position: 639120-637900 (Counterclockwise)
Preceding gene: 238026275
Following gene: 238026273
Centisome position: 16.36
GC content: 68.88
Gene sequence:
>1221_bases ATGACCGATCGCCGACCGGAACCCGTGCCGACCCACGTGCCGCCCGAGAACGGGCTGAACTTCGAACTGCTGACGACCGA CGGCCACGCGCGCCGGGGCCGCGTCACGCTCAACCACGGCGTGGTCGAGACGCCGATCTTCATGCCGGTCGGCACCTACG GCACCGTCAAGGCGGTGCAGCCGCGCGAGCTGCGCGAGATGCAGGCGCAGATCATTCTCGGCAACACCTTCCACCTGTGG CTGCGCCCGGGCCTCGAGACGATCGGCGCGCACGGCGGCCTGCACCGTTTCATGGGCTGGGACAGGCCGATCCTGACCGA CTCGGGCGGCTTCCAGGTGTTCTCGCTCGGCGAGCTGCGCAAGATCACCGAGGATGGCGTGACGTTCGCCTCGCCGATCA ACGGCGACAAGCTGTTCCTGTCGCCCGAGGTGTCGATGCAGATCCAGAAGGTGCTGAACTCCGATATCGTCATGCAGTTC GACGAATGCACGCCCTACGCGACCGGCGGCGTGCCGACCACCCACCGGGAGGCGGCCGAGTCGATGCGCATGTCGCTGCG CTGGGCGAAGCGCTCGCTCGACGAATTCGACCGGCTCGGCAACCCCAACGCGCTGTTCGGCATCGTGCAGGGCGGCATGT TCGAGGACCTGCGCGACGAGTCGCTGGCCGGCCTTGCCGCGCTCGACTTCCACGGCTACGCGATCGGCGGGCTGTCGGTG GGCGAGCCGAAGGAGGACATGATGCGCGTGCTGCGCCATGTCGGCCCGAAGCTGCCGGCGCACAAGCCGCACTACCTGAT GGGGGTGGGCACCCCCGAGGATCTGGTCGAGGGCGTGGCCAACGGCGTCGACATGTTCGACTGCGTGATGCCGACCCGCA ACGCGCGCAACGGCTGGCTGTTCACGCGCTTCGGCGACGTGAAGATCCGCAACGCCACGCACCGCAACTCGCTCAAGCCG CTCGACGAGCGCTGCGGCTGCTACACCTGCCGCCACTTCACGCGCGGCTACCTGCATCACCTGCACCGCGTGGGCGAGAT CCTCGGCGCGCAGCTGAACACGATCCACAACCTGCACTACTACCTGGAGCTGATGAGCGAGATCCGCGCGGCGATCGAAA CCCACACGTTCGACGCGTTCCGCGCACGCTTCGCGGCCGACCGCGCACGCGGCGTGGAGGCCGAGCCGGTCGCGCCGGGC GAGGCGGCCGCGGGCGGATGA
Upstream 100 bases:
>100_bases CCCTGCCCTTTTCCCGCCGCCGGCACGTTCACGCGCCGGCGGCATTCACCACCACTCGCAACGCGCGCCGGACTGTCTTC CGGTGGCCAGGAGTACCTGA
Downstream 100 bases:
>100_bases CGGCCGCGCATGTCACGGCGGCACGCAATCGCGCCGCCTCCCGGGATGCCTCATACGCCTGTCGAATGCCGCGGCGATGC TCGCGAGGCCGCGTTTTTCA
Product: Queuine tRNA-ribosyltransferase
Products: NA
Alternate protein names: Guanine insertion enzyme; tRNA-guanine transglycosylase [H]
Number of amino acids: Translated: 406; Mature: 405
Protein sequence:
>406_residues MTDRRPEPVPTHVPPENGLNFELLTTDGHARRGRVTLNHGVVETPIFMPVGTYGTVKAVQPRELREMQAQIILGNTFHLW LRPGLETIGAHGGLHRFMGWDRPILTDSGGFQVFSLGELRKITEDGVTFASPINGDKLFLSPEVSMQIQKVLNSDIVMQF DECTPYATGGVPTTHREAAESMRMSLRWAKRSLDEFDRLGNPNALFGIVQGGMFEDLRDESLAGLAALDFHGYAIGGLSV GEPKEDMMRVLRHVGPKLPAHKPHYLMGVGTPEDLVEGVANGVDMFDCVMPTRNARNGWLFTRFGDVKIRNATHRNSLKP LDERCGCYTCRHFTRGYLHHLHRVGEILGAQLNTIHNLHYYLELMSEIRAAIETHTFDAFRARFAADRARGVEAEPVAPG EAAAGG
Sequences:
>Translated_406_residues MTDRRPEPVPTHVPPENGLNFELLTTDGHARRGRVTLNHGVVETPIFMPVGTYGTVKAVQPRELREMQAQIILGNTFHLW LRPGLETIGAHGGLHRFMGWDRPILTDSGGFQVFSLGELRKITEDGVTFASPINGDKLFLSPEVSMQIQKVLNSDIVMQF DECTPYATGGVPTTHREAAESMRMSLRWAKRSLDEFDRLGNPNALFGIVQGGMFEDLRDESLAGLAALDFHGYAIGGLSV GEPKEDMMRVLRHVGPKLPAHKPHYLMGVGTPEDLVEGVANGVDMFDCVMPTRNARNGWLFTRFGDVKIRNATHRNSLKP LDERCGCYTCRHFTRGYLHHLHRVGEILGAQLNTIHNLHYYLELMSEIRAAIETHTFDAFRARFAADRARGVEAEPVAPG EAAAGG >Mature_405_residues TDRRPEPVPTHVPPENGLNFELLTTDGHARRGRVTLNHGVVETPIFMPVGTYGTVKAVQPRELREMQAQIILGNTFHLWL RPGLETIGAHGGLHRFMGWDRPILTDSGGFQVFSLGELRKITEDGVTFASPINGDKLFLSPEVSMQIQKVLNSDIVMQFD ECTPYATGGVPTTHREAAESMRMSLRWAKRSLDEFDRLGNPNALFGIVQGGMFEDLRDESLAGLAALDFHGYAIGGLSVG EPKEDMMRVLRHVGPKLPAHKPHYLMGVGTPEDLVEGVANGVDMFDCVMPTRNARNGWLFTRFGDVKIRNATHRNSLKPL DERCGCYTCRHFTRGYLHHLHRVGEILGAQLNTIHNLHYYLELMSEIRAAIETHTFDAFRARFAADRARGVEAEPVAPGE AAAGG
Specific function: Exchanges the guanine residue with 7-aminomethyl-7- deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). After this exchange, a cyclopentendiol moiety is attached to the 7-aminomethyl group of 7-deazaguanine, resulting in the hyper
COG id: COG0343
COG function: function code J; Queuine/archaeosine tRNA-ribosyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the queuine tRNA-ribosyltransferase family [H]
Homologues:
Organism=Homo sapiens, GI13654276, Length=355, Percent_Identity=43.6619718309859, Blast_Score=286, Evalue=2e-77, Organism=Escherichia coli, GI1786607, Length=374, Percent_Identity=64.1711229946524, Blast_Score=488, Evalue=1e-139, Organism=Caenorhabditis elegans, GI17544680, Length=379, Percent_Identity=42.2163588390501, Blast_Score=296, Evalue=1e-80, Organism=Caenorhabditis elegans, GI25146502, Length=164, Percent_Identity=29.2682926829268, Blast_Score=76, Evalue=3e-14, Organism=Drosophila melanogaster, GI19920510, Length=390, Percent_Identity=44.1025641025641, Blast_Score=323, Evalue=1e-88, Organism=Drosophila melanogaster, GI21355311, Length=170, Percent_Identity=27.0588235294118, Blast_Score=79, Evalue=7e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004803 - InterPro: IPR002616 [H]
Pfam domain/function: PF01702 TGT [H]
EC number: =2.4.2.29 [H]
Molecular weight: Translated: 45083; Mature: 44952
Theoretical pI: Translated: 6.83; Mature: 6.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDRRPEPVPTHVPPENGLNFELLTTDGHARRGRVTLNHGVVETPIFMPVGTYGTVKAVQ CCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEECCCEEECCEEEECCCCCCEECCC PRELREMQAQIILGNTFHLWLRPGLETIGAHGGLHRFMGWDRPILTDSGGFQVFSLGELR HHHHHHHHHEEEECCEEEEEECCCHHHHHCCCCHHHHCCCCCCEEECCCCEEEEECHHHH KITEDGVTFASPINGDKLFLSPEVSMQIQKVLNSDIVMQFDECTPYATGGVPTTHREAAE HHHHCCCEEECCCCCCEEEECCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHH SMRMSLRWAKRSLDEFDRLGNPNALFGIVQGGMFEDLRDESLAGLAALDFHGYAIGGLSV HHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCEEEEECCCEEECCCCC GEPKEDMMRVLRHVGPKLPAHKPHYLMGVGTPEDLVEGVANGVDMFDCVMPTRNARNGWL CCCHHHHHHHHHHCCCCCCCCCCCEEEECCCHHHHHHHHHCCCCHHHHHCCCCCCCCCEE FTRFGDVKIRNATHRNSLKPLDERCGCYTCRHFTRGYLHHLHRVGEILGAQLNTIHNLHY EEEECCEEEECCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YLELMSEIRAAIETHTFDAFRARFAADRARGVEAEPVAPGEAAAGG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC >Mature Secondary Structure TDRRPEPVPTHVPPENGLNFELLTTDGHARRGRVTLNHGVVETPIFMPVGTYGTVKAVQ CCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEECCCEEECCEEEECCCCCCEECCC PRELREMQAQIILGNTFHLWLRPGLETIGAHGGLHRFMGWDRPILTDSGGFQVFSLGELR HHHHHHHHHEEEECCEEEEEECCCHHHHHCCCCHHHHCCCCCCEEECCCCEEEEECHHHH KITEDGVTFASPINGDKLFLSPEVSMQIQKVLNSDIVMQFDECTPYATGGVPTTHREAAE HHHHCCCEEECCCCCCEEEECCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHH SMRMSLRWAKRSLDEFDRLGNPNALFGIVQGGMFEDLRDESLAGLAALDFHGYAIGGLSV HHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCEEEEECCCEEECCCCC GEPKEDMMRVLRHVGPKLPAHKPHYLMGVGTPEDLVEGVANGVDMFDCVMPTRNARNGWL CCCHHHHHHHHHHCCCCCCCCCCCEEEECCCHHHHHHHHHCCCCHHHHHCCCCCCCCCEE FTRFGDVKIRNATHRNSLKPLDERCGCYTCRHFTRGYLHHLHRVGEILGAQLNTIHNLHY EEEECCEEEECCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YLELMSEIRAAIETHTFDAFRARFAADRARGVEAEPVAPGEAAAGG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA