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The map label for this gene is secD [H]

Identifier: 238026272

GI number: 238026272

Start: 635153

End: 637186

Strand: Reverse

Name: secD [H]

Synonym: bglu_1g06050

Alternate gene names: 238026272

Gene position: 637186-635153 (Counterclockwise)

Preceding gene: 238026273

Following gene: 238026271

Centisome position: 16.31

GC content: 69.22

Gene sequence:

>2034_bases
ATGAATCGTTACCCAATCTGGAAATATGTCGTGATGGTCGTCGCGCTCGCGATCGGCCTTCTGTACACATTGCCCAACTT
CTACGGCGAGGCGCCGGCGGTACAGGTGTCGAGCGGCAAGGCCACGGTCAAGATCGACTCGAGCACGCTCGCCCAGGTCG
AGGCGGCGCTGAAGGCCGCCAGCATCACGCCGGACGACATCACGTTCGACAACTCGGCGAACAACGCGAACATCCGCGTG
CGCCTGAAGGACACCGATACCCAGCTGCGCGTGAAGGATCTCTTGCAGAAGGCGCTCAACAGCGACCCGAGCGATCCGCA
GTACGTCGTCGCGCTGAACCTGCAGAGCGCCTCGCCGCGCTGGCTGACCGCGCTGCACGCGCTGCCCATGTACCTCGGCC
TGGACCTGCGCGGCGGCGTGCACTTCCTGCTGCAGGTGGACATGACGGGTGCGCTCAACAAGAAGCTCGATTCCGACGCC
ACCGACGCGCGCACCCAGTTGCGCGACCGCGGCATCCGCGACGGCGGCGTGAACCGCGTCGACCAGTCGGTGGTCGCGAA
CTTCGCCGACCAGGCCACCGCCGAGCAGGCGCGCAGCTTCCTGGCCGGCTCGATCACCGAGCTGCAGTGGGCCACCCAGC
CCGGCGGCGGCGGCTACCAGGTGGTCGGCACCTTCACGCCGGCCGTCCGGCAGGCCGTGGAAGAAGCCGCGCTCAAGCAG
AACCTGACCACGCTGCACAACCGCGTCAACGAACTCGGCGTGTCCGAGCCGATCATCCAGCAGCAGGGCAACGACCGCAT
CGTGGTGGAGCTGCCGGGCGTGCAGGACACCGCGAAGGCGAAGGACATCATCGGCCGCACCGCCACGCTGGAGGCGCGCC
TGGCCGACCCGGTCAACCTGCATCCGAACCCGAATGACCCGGTGCCGCCGGGCGACGAGCTGTTCACGCAGGGCAACCAG
GTGCCGGTGCTGCTGCGCAAGCAGGTGATCTTCACCGGCGACCGCATCATCGACGCGTCGGCCGGCTTCGACGAGCACAA
CCGCCCGTCGGTCAACATCCGCCTCGACTCGAACGGCGGCCGCGCGGTGCGCACGGTCTCCCGCGAGAACATCGGCAAGC
CGATGGCCATGGTGCTGTTCGAGAAGGGCAAGGGCGAGGTGCTGACGGTCGCGACGATCCAGTCCGAGCTCGGCGACCGC
TTCCAGATCACCGGCCAGCCGACCCCGCAGGCCGCGGCCGACCTCGCGCTGCTGCTGCGCGCCGGCTCGCTCGCCGCGCC
GATGGACATCATCGAGGAACGCACCATCGGCCCGAGCCTCGGCGCCGACAACATCCGCATGGGCGTGCACTCGGTGATCT
GGGGCTTCGTGGCGATCGCCGTCTTCATGGTGGCCTACTACCTGCTGTTCGGCGTGGTGTCGGTGATCGGCCTGTCGGTG
AACCTGCTGCTGCTGGTGGCCGCGCTGTCGGTGATGCAGGCCACGCTCACGCTGCCCGGCATCGCCGCAATCGCGCTCGC
GCTCGGCATGGCGATCGACTCGAACGTGCTGATCAACGAACGCGTGCGCGAGGAGCTGCGCGGCGGCGCCTCGCCGCAGA
TCGCGATCCAGCAGGGCTATGCGCATGCCTGGGCGACGATTCTCGACTCGAACGTGACCACGCTGATCGCCGGCCTCGCA
CTGCTCGCGTTCGGCTCGGGCCCGGTGCGCGCGTTCGCGATCGTCCACTGTATCGGCATCCTGACCTCGATGTTCTCGGC
CGTGTTCTTCTCGCGCGGTCTCGTGAACCTCTGGTACGGCGGCCGCAAGAAGCTCAAGTCGATCTCGATCGGCCAGGTCT
GGAAACCGGCCGCCGCCACGCCGGGCGCGGACCTGGCGCTGCCCGAGCAGGGCGGCGACGGCGGCACCGCGAAGGCGGGC
CGCCCCGCCGCCAGGACCGCGAACGCCGGCACCGCGGCGCGCGGCGCGAAGCCGGTGGCACGCCGCCGCTCCGGCCCCGG
CGTCCCGCCGAAGAAGCCGGGTTCGTCCCAATAA

Upstream 100 bases:

>100_bases
CCGAGCGTCCGGCGCCGAGCCGGCCCGCGCGAGCCACGCGCGGGCGGCAAGGCCGCCGGACGCGACGCTTTCCAAGCCAA
CCTTCCCGTTCGGCCCCCTC

Downstream 100 bases:

>100_bases
GCGCCGGAGAACGCACATGGAATTTTTCCGCATTCGTAAAGACATCCCGTTCATGCGGCACGCGTTGGTGTTCAACGTGA
TATCGCTCGTGACGTTCCTG

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 677; Mature: 677

Protein sequence:

>677_residues
MNRYPIWKYVVMVVALAIGLLYTLPNFYGEAPAVQVSSGKATVKIDSSTLAQVEAALKAASITPDDITFDNSANNANIRV
RLKDTDTQLRVKDLLQKALNSDPSDPQYVVALNLQSASPRWLTALHALPMYLGLDLRGGVHFLLQVDMTGALNKKLDSDA
TDARTQLRDRGIRDGGVNRVDQSVVANFADQATAEQARSFLAGSITELQWATQPGGGGYQVVGTFTPAVRQAVEEAALKQ
NLTTLHNRVNELGVSEPIIQQQGNDRIVVELPGVQDTAKAKDIIGRTATLEARLADPVNLHPNPNDPVPPGDELFTQGNQ
VPVLLRKQVIFTGDRIIDASAGFDEHNRPSVNIRLDSNGGRAVRTVSRENIGKPMAMVLFEKGKGEVLTVATIQSELGDR
FQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGVHSVIWGFVAIAVFMVAYYLLFGVVSVIGLSV
NLLLLVAALSVMQATLTLPGIAAIALALGMAIDSNVLINERVREELRGGASPQIAIQQGYAHAWATILDSNVTTLIAGLA
LLAFGSGPVRAFAIVHCIGILTSMFSAVFFSRGLVNLWYGGRKKLKSISIGQVWKPAAATPGADLALPEQGGDGGTAKAG
RPAARTANAGTAARGAKPVARRRSGPGVPPKKPGSSQ

Sequences:

>Translated_677_residues
MNRYPIWKYVVMVVALAIGLLYTLPNFYGEAPAVQVSSGKATVKIDSSTLAQVEAALKAASITPDDITFDNSANNANIRV
RLKDTDTQLRVKDLLQKALNSDPSDPQYVVALNLQSASPRWLTALHALPMYLGLDLRGGVHFLLQVDMTGALNKKLDSDA
TDARTQLRDRGIRDGGVNRVDQSVVANFADQATAEQARSFLAGSITELQWATQPGGGGYQVVGTFTPAVRQAVEEAALKQ
NLTTLHNRVNELGVSEPIIQQQGNDRIVVELPGVQDTAKAKDIIGRTATLEARLADPVNLHPNPNDPVPPGDELFTQGNQ
VPVLLRKQVIFTGDRIIDASAGFDEHNRPSVNIRLDSNGGRAVRTVSRENIGKPMAMVLFEKGKGEVLTVATIQSELGDR
FQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGVHSVIWGFVAIAVFMVAYYLLFGVVSVIGLSV
NLLLLVAALSVMQATLTLPGIAAIALALGMAIDSNVLINERVREELRGGASPQIAIQQGYAHAWATILDSNVTTLIAGLA
LLAFGSGPVRAFAIVHCIGILTSMFSAVFFSRGLVNLWYGGRKKLKSISIGQVWKPAAATPGADLALPEQGGDGGTAKAG
RPAARTANAGTAARGAKPVARRRSGPGVPPKKPGSSQ
>Mature_677_residues
MNRYPIWKYVVMVVALAIGLLYTLPNFYGEAPAVQVSSGKATVKIDSSTLAQVEAALKAASITPDDITFDNSANNANIRV
RLKDTDTQLRVKDLLQKALNSDPSDPQYVVALNLQSASPRWLTALHALPMYLGLDLRGGVHFLLQVDMTGALNKKLDSDA
TDARTQLRDRGIRDGGVNRVDQSVVANFADQATAEQARSFLAGSITELQWATQPGGGGYQVVGTFTPAVRQAVEEAALKQ
NLTTLHNRVNELGVSEPIIQQQGNDRIVVELPGVQDTAKAKDIIGRTATLEARLADPVNLHPNPNDPVPPGDELFTQGNQ
VPVLLRKQVIFTGDRIIDASAGFDEHNRPSVNIRLDSNGGRAVRTVSRENIGKPMAMVLFEKGKGEVLTVATIQSELGDR
FQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGVHSVIWGFVAIAVFMVAYYLLFGVVSVIGLSV
NLLLLVAALSVMQATLTLPGIAAIALALGMAIDSNVLINERVREELRGGASPQIAIQQGYAHAWATILDSNVTTLIAGLA
LLAFGSGPVRAFAIVHCIGILTSMFSAVFFSRGLVNLWYGGRKKLKSISIGQVWKPAAATPGADLALPEQGGDGGTAKAG
RPAARTANAGTAARGAKPVARRRSGPGVPPKKPGSSQ

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=628, Percent_Identity=44.4267515923567, Blast_Score=509, Evalue=1e-145,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 71793; Mature: 71793

Theoretical pI: Translated: 9.61; Mature: 9.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRYPIWKYVVMVVALAIGLLYTLPNFYGEAPAVQVSSGKATVKIDSSTLAQVEAALKAA
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEECCHHHHHHHHHHHHC
SITPDDITFDNSANNANIRVRLKDTDTQLRVKDLLQKALNSDPSDPQYVVALNLQSASPR
CCCCCCCEECCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCH
WLTALHALPMYLGLDLRGGVHFLLQVDMTGALNKKLDSDATDARTQLRDRGIRDGGVNRV
HHHHHHHHHHHHCCCCCCCEEEEEEEECCHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHH
DQSVVANFADQATAEQARSFLAGSITELQWATQPGGGGYQVVGTFTPAVRQAVEEAALKQ
HHHHHHHHHHHHHHHHHHHHHHCCHHHEEEECCCCCCCEEEEEECCHHHHHHHHHHHHHH
NLTTLHNRVNELGVSEPIIQQQGNDRIVVELPGVQDTAKAKDIIGRTATLEARLADPVNL
HHHHHHHHHHHCCCCCCHHHCCCCCEEEEEECCCCCHHHHHHHHCCCCEEEECCCCCCCC
HPNPNDPVPPGDELFTQGNQVPVLLRKQVIFTGDRIIDASAGFDEHNRPSVNIRLDSNGG
CCCCCCCCCCCHHHHCCCCCCCEEEEEEHEEECCEEEECCCCCCCCCCCEEEEEEECCCC
RAVRTVSRENIGKPMAMVLFEKGKGEVLTVATIQSELGDRFQITGQPTPQAAADLALLLR
CEEEEECHHHCCCCEEEEEEECCCCCEEEEEEEHHHCCCEEEECCCCCCHHHHHHHHHHH
AGSLAAPMDIIEERTIGPSLGADNIRMGVHSVIWGFVAIAVFMVAYYLLFGVVSVIGLSV
CCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NLLLLVAALSVMQATLTLPGIAAIALALGMAIDSNVLINERVREELRGGASPQIAIQQGY
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEHHHHHHHHHCCCCCCEEEECCH
AHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCIGILTSMFSAVFFSRGLVNLWYG
HHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCC
GRKKLKSISIGQVWKPAAATPGADLALPEQGGDGGTAKAGRPAARTANAGTAARGAKPVA
CHHHHHCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
RRRSGPGVPPKKPGSSQ
HCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNRYPIWKYVVMVVALAIGLLYTLPNFYGEAPAVQVSSGKATVKIDSSTLAQVEAALKAA
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEECCHHHHHHHHHHHHC
SITPDDITFDNSANNANIRVRLKDTDTQLRVKDLLQKALNSDPSDPQYVVALNLQSASPR
CCCCCCCEECCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCH
WLTALHALPMYLGLDLRGGVHFLLQVDMTGALNKKLDSDATDARTQLRDRGIRDGGVNRV
HHHHHHHHHHHHCCCCCCCEEEEEEEECCHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHH
DQSVVANFADQATAEQARSFLAGSITELQWATQPGGGGYQVVGTFTPAVRQAVEEAALKQ
HHHHHHHHHHHHHHHHHHHHHHCCHHHEEEECCCCCCCEEEEEECCHHHHHHHHHHHHHH
NLTTLHNRVNELGVSEPIIQQQGNDRIVVELPGVQDTAKAKDIIGRTATLEARLADPVNL
HHHHHHHHHHHCCCCCCHHHCCCCCEEEEEECCCCCHHHHHHHHCCCCEEEECCCCCCCC
HPNPNDPVPPGDELFTQGNQVPVLLRKQVIFTGDRIIDASAGFDEHNRPSVNIRLDSNGG
CCCCCCCCCCCHHHHCCCCCCCEEEEEEHEEECCEEEECCCCCCCCCCCEEEEEEECCCC
RAVRTVSRENIGKPMAMVLFEKGKGEVLTVATIQSELGDRFQITGQPTPQAAADLALLLR
CEEEEECHHHCCCCEEEEEEECCCCCEEEEEEEHHHCCCEEEECCCCCCHHHHHHHHHHH
AGSLAAPMDIIEERTIGPSLGADNIRMGVHSVIWGFVAIAVFMVAYYLLFGVVSVIGLSV
CCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NLLLLVAALSVMQATLTLPGIAAIALALGMAIDSNVLINERVREELRGGASPQIAIQQGY
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEHHHHHHHHHCCCCCCEEEECCH
AHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCIGILTSMFSAVFFSRGLVNLWYG
HHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCC
GRKKLKSISIGQVWKPAAATPGADLALPEQGGDGGTAKAGRPAARTANAGTAARGAKPVA
CHHHHHCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
RRRSGPGVPPKKPGSSQ
HCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]