| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is 238026103
Identifier: 238026103
GI number: 238026103
Start: 449681
End: 451471
Strand: Direct
Name: 238026103
Synonym: bglu_1g04320
Alternate gene names: NA
Gene position: 449681-451471 (Clockwise)
Preceding gene: 238026102
Following gene: 238026104
Centisome position: 11.51
GC content: 70.46
Gene sequence:
>1791_bases ATGACCCCGATACGCTATTCGATCGTCCCGAAGGACCCTGCCGCCCACCTGTTCGAGGTCACGCTGACGGTGGCCGAGCC CGCTGCGGACGGCCAGCGCTTCATGCTGCCGGTGTGGATTCCCGGCAGCTACATGGTGCGCGAGTTCGCGCGCAGCATCG TCACGCTGCGCGCGTTCAACGAGGCGGGCCGCAAGGTGCGCATCGCGAAGACCGACAAGCACAGCTGGCAGGCCGCGCCG GTGGCCGGCCCGCTGACGCTGCGCTACGAGGTCTACGCCTGGGACCTGTCGGTGCGCGCCGCGCATCTGGACGACACGGG CGGCTTCTTCAACGGCACCAGCGTGTTCCTCGCCGTCGAGGGGCAGGAGGCGGCGCCGTGCGTGGTCGCGATCGAGCGGC CGGCCGGCGATAGCGCGCGCCGCTGGCGCGTGGCCACCGCGCTGCGCGAGGCGCGCGGCACGAAGCGGTACGGCTTCGGC GACTACCTGGCCGACGACTACGACGAGCTCATCGATCATCCCGTCACGCTCGGCGAGTTCGCGCTGGCGAGCTTCGCGGC GCACGGCGTGCCGCACGACGTGGTGATCGCGGGGCGGGTGACGCGGCTCGACATCGAGCGGCTCGCGGCAGACCTCAAGC GCATCTGCGAGGCGCAGATCGCGCTGTTCGAGCCGCGCACGAAGAAGGCGCCGATGGCTCGCTACGTGTTCATGACGCAG GCCGTCACCGACGGCTACGGCGGTCTCGAGCACCGTGCCTCCACGGCGCTGGTCTGCAACCGCGGCGACCTGCCGGTGAA GGGCCGGCCGGAGACGACCGACGGCTACCGCACCTATCTCGCCCTCTGCAGCCACGAATACTTCCACACCTGGAACGTCA AGCGCATCAAGCCGGCCGCGTTCGTGCCCTACGATTTGCGCCAGGAAAGCTACACTTCGCTGCTGTGGCTGTTCGAGGGC TTCACGTCCTACTACGACGACCTGATGCTGGTGCGCAGCGGCCTGATGAGCCGCGACGAGTATTTCGCCGCGCTCGGGCG CACCGTGGGCGGCGTGCTGCGCGGTACGGGGCGCCTGAAGCAGAGCGTCGCGGAAAGCTCGTTCGACAGCTGGATCAAGT ATTACCGCCAGGACGAGAATGCCTCGAACGCGATCGTCAGCTACTACACCAAGGGCTCGCTCGTCGCGCTCGCGTTCGAT TTGGCGATTCGCGGCGCTACTCGCAACCGCAAGTCGCTCGACGACGTGATGCGTCTGCTGTGGACGCGCTACGGCCGTGA TTTCTACCACGGCCAGCCGCGCGGCGTGGGCGAGGACGAGGTGGCCGCGCTGATCACCGAGGCCACCGGCGTGGCGCTGG GCAGGCTGTTCGACGACGCCGTGTCCGGCACGCGCGACCTGCCGCTGGCCGAGCTGCTCGAGCCGTTCGGCGTGATGCTC TCGCCCGAGGCGGGGCCGAACCCGAAGCCGTCGCTGGGCGCGCGCGTGCGCGGCGGCGCGGATACCACGCTGGCCGTGGT CTACGAGGGCGGCGCCGCGCACCGCGCGGGCCTGTCGGCCGGCGACGTGCTGATCGCGATCGACGGCCTGCGCGTGACCG GCGCGAACCTCGACGCGCTGCTCGCGCGCTACCAGCCTGGCGAGCGCGTGCAGGTTCATGCGTTTCGCCGCGACGAACTG CGTGAGACGACGCTCAGGCTCGACGCGCCGGACGTCGTGCGCTACCGGCTCACGGCCGACACGCGCACCGCCGCGCGGCG CGGCTGGCAGCAAGGCTGGCTCGGCGGCTAG
Upstream 100 bases:
>100_bases CCGCGCCCCCACCCCCGTTGCGCAAAGAGGCGCCGCCGTCCCGCAGGCGCCTCTTTCTTTTCGACCCCGCTATCCGAACC GCTTCTTGCCGATGTCATCG
Downstream 100 bases:
>100_bases CACGAACGAAATCGTTCCAGCGGCGCGGATTGTTCCGGTGGTGCAACAATCCGTCGCCGGGCGCCGGCTTTTTCCGGTCT GGACGCATCCGCACAATGGC
Product: PDZ domain-containing protein
Products: NA
Alternate protein names: Peptidase M; Protease; M61 Family Peptidase; M61 Glycyl Aminopeptidase; M61 Family Glycyl Aminopeptidase; Pdz/Dhr/Glgf; Trypsin-Like Serine Protease; Aminopeptidase N Family Protein; Metallopeptidase; Glycyl Aminopeptidase; PDZ Domain-Containing Protein; Protease With C-Terminal PDZ Domain-Containing Protein; PDZ/DHR/GLGFPeptidase M; PDZ Domain Protein; Protease With C-Terminal PDZ Domain; Signaling Protein; M61 Glycyl Aminopeptidase Protein; M61 Glycyl Aminopeptidase Family Protein
Number of amino acids: Translated: 596; Mature: 595
Protein sequence:
>596_residues MTPIRYSIVPKDPAAHLFEVTLTVAEPAADGQRFMLPVWIPGSYMVREFARSIVTLRAFNEAGRKVRIAKTDKHSWQAAP VAGPLTLRYEVYAWDLSVRAAHLDDTGGFFNGTSVFLAVEGQEAAPCVVAIERPAGDSARRWRVATALREARGTKRYGFG DYLADDYDELIDHPVTLGEFALASFAAHGVPHDVVIAGRVTRLDIERLAADLKRICEAQIALFEPRTKKAPMARYVFMTQ AVTDGYGGLEHRASTALVCNRGDLPVKGRPETTDGYRTYLALCSHEYFHTWNVKRIKPAAFVPYDLRQESYTSLLWLFEG FTSYYDDLMLVRSGLMSRDEYFAALGRTVGGVLRGTGRLKQSVAESSFDSWIKYYRQDENASNAIVSYYTKGSLVALAFD LAIRGATRNRKSLDDVMRLLWTRYGRDFYHGQPRGVGEDEVAALITEATGVALGRLFDDAVSGTRDLPLAELLEPFGVML SPEAGPNPKPSLGARVRGGADTTLAVVYEGGAAHRAGLSAGDVLIAIDGLRVTGANLDALLARYQPGERVQVHAFRRDEL RETTLRLDAPDVVRYRLTADTRTAARRGWQQGWLGG
Sequences:
>Translated_596_residues MTPIRYSIVPKDPAAHLFEVTLTVAEPAADGQRFMLPVWIPGSYMVREFARSIVTLRAFNEAGRKVRIAKTDKHSWQAAP VAGPLTLRYEVYAWDLSVRAAHLDDTGGFFNGTSVFLAVEGQEAAPCVVAIERPAGDSARRWRVATALREARGTKRYGFG DYLADDYDELIDHPVTLGEFALASFAAHGVPHDVVIAGRVTRLDIERLAADLKRICEAQIALFEPRTKKAPMARYVFMTQ AVTDGYGGLEHRASTALVCNRGDLPVKGRPETTDGYRTYLALCSHEYFHTWNVKRIKPAAFVPYDLRQESYTSLLWLFEG FTSYYDDLMLVRSGLMSRDEYFAALGRTVGGVLRGTGRLKQSVAESSFDSWIKYYRQDENASNAIVSYYTKGSLVALAFD LAIRGATRNRKSLDDVMRLLWTRYGRDFYHGQPRGVGEDEVAALITEATGVALGRLFDDAVSGTRDLPLAELLEPFGVML SPEAGPNPKPSLGARVRGGADTTLAVVYEGGAAHRAGLSAGDVLIAIDGLRVTGANLDALLARYQPGERVQVHAFRRDEL RETTLRLDAPDVVRYRLTADTRTAARRGWQQGWLGG >Mature_595_residues TPIRYSIVPKDPAAHLFEVTLTVAEPAADGQRFMLPVWIPGSYMVREFARSIVTLRAFNEAGRKVRIAKTDKHSWQAAPV AGPLTLRYEVYAWDLSVRAAHLDDTGGFFNGTSVFLAVEGQEAAPCVVAIERPAGDSARRWRVATALREARGTKRYGFGD YLADDYDELIDHPVTLGEFALASFAAHGVPHDVVIAGRVTRLDIERLAADLKRICEAQIALFEPRTKKAPMARYVFMTQA VTDGYGGLEHRASTALVCNRGDLPVKGRPETTDGYRTYLALCSHEYFHTWNVKRIKPAAFVPYDLRQESYTSLLWLFEGF TSYYDDLMLVRSGLMSRDEYFAALGRTVGGVLRGTGRLKQSVAESSFDSWIKYYRQDENASNAIVSYYTKGSLVALAFDL AIRGATRNRKSLDDVMRLLWTRYGRDFYHGQPRGVGEDEVAALITEATGVALGRLFDDAVSGTRDLPLAELLEPFGVMLS PEAGPNPKPSLGARVRGGADTTLAVVYEGGAAHRAGLSAGDVLIAIDGLRVTGANLDALLARYQPGERVQVHAFRRDELR ETTLRLDAPDVVRYRLTADTRTAARRGWQQGWLGG
Specific function: Unknown
COG id: COG3975
COG function: function code R; Predicted protease with the C-terminal PDZ domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 65869; Mature: 65738
Theoretical pI: Translated: 8.26; Mature: 8.26
Prosite motif: PS50106 PDZ
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPIRYSIVPKDPAAHLFEVTLTVAEPAADGQRFMLPVWIPGSYMVREFARSIVTLRAFN CCCEEEEECCCCCCCEEEEEEEEEECCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHH EAGRKVRIAKTDKHSWQAAPVAGPLTLRYEVYAWDLSVRAAHLDDTGGFFNGTSVFLAVE HCCCEEEEEECCCCCCCCCCCCCCEEEEEEEEEEEEEEEEEEECCCCCCCCCCEEEEEEE GQEAAPCVVAIERPAGDSARRWRVATALREARGTKRYGFGDYLADDYDELIDHPVTLGEF CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHCCCCCHHHH ALASFAAHGVPHDVVIAGRVTRLDIERLAADLKRICEAQIALFEPRTKKAPMARYVFMTQ HHHHHHHCCCCCEEEEECCEEHHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHH AVTDGYGGLEHRASTALVCNRGDLPVKGRPETTDGYRTYLALCSHEYFHTWNVKRIKPAA HHHCCCCCCHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCHHEECCCCEECCCE FVPYDLRQESYTSLLWLFEGFTSYYDDLMLVRSGLMSRDEYFAALGRTVGGVLRGTGRLK ECCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHH QSVAESSFDSWIKYYRQDENASNAIVSYYTKGSLVALAFDLAIRGATRNRKSLDDVMRLL HHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEEEEHHHCCCCCCHHHHHHHHHHH WTRYGRDFYHGQPRGVGEDEVAALITEATGVALGRLFDDAVSGTRDLPLAELLEPFGVML HHHHCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCEEE SPEAGPNPKPSLGARVRGGADTTLAVVYEGGAAHRAGLSAGDVLIAIDGLRVTGANLDAL CCCCCCCCCCCCCCEECCCCCCEEEEEEECCCCCCCCCCCCCEEEEEECEEEECCCHHHH LARYQPGERVQVHAFRRDELRETTLRLDAPDVVRYRLTADTRTAARRGWQQGWLGG HHHCCCCCEEEEEEECHHHHHHHHEECCCCCCEEEEEECCHHHHHHCCCCCCCCCC >Mature Secondary Structure TPIRYSIVPKDPAAHLFEVTLTVAEPAADGQRFMLPVWIPGSYMVREFARSIVTLRAFN CCEEEEECCCCCCCEEEEEEEEEECCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHH EAGRKVRIAKTDKHSWQAAPVAGPLTLRYEVYAWDLSVRAAHLDDTGGFFNGTSVFLAVE HCCCEEEEEECCCCCCCCCCCCCCEEEEEEEEEEEEEEEEEEECCCCCCCCCCEEEEEEE GQEAAPCVVAIERPAGDSARRWRVATALREARGTKRYGFGDYLADDYDELIDHPVTLGEF CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHCCCCCHHHH ALASFAAHGVPHDVVIAGRVTRLDIERLAADLKRICEAQIALFEPRTKKAPMARYVFMTQ HHHHHHHCCCCCEEEEECCEEHHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHH AVTDGYGGLEHRASTALVCNRGDLPVKGRPETTDGYRTYLALCSHEYFHTWNVKRIKPAA HHHCCCCCCHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCHHEECCCCEECCCE FVPYDLRQESYTSLLWLFEGFTSYYDDLMLVRSGLMSRDEYFAALGRTVGGVLRGTGRLK ECCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHH QSVAESSFDSWIKYYRQDENASNAIVSYYTKGSLVALAFDLAIRGATRNRKSLDDVMRLL HHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEEEEHHHCCCCCCHHHHHHHHHHH WTRYGRDFYHGQPRGVGEDEVAALITEATGVALGRLFDDAVSGTRDLPLAELLEPFGVML HHHHCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCEEE SPEAGPNPKPSLGARVRGGADTTLAVVYEGGAAHRAGLSAGDVLIAIDGLRVTGANLDAL CCCCCCCCCCCCCCEECCCCCCEEEEEEECCCCCCCCCCCCCEEEEEECEEEECCCHHHH LARYQPGERVQVHAFRRDELRETTLRLDAPDVVRYRLTADTRTAARRGWQQGWLGG HHHCCCCCEEEEEEECHHHHHHHHEECCCCCCEEEEEECCHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA