Click here to switch to the map view.

The map label for this gene is sspB [H]

Identifier: 238026025

GI number: 238026025

Start: 366275

End: 366793

Strand: Direct

Name: sspB [H]

Synonym: bglu_1g03510

Alternate gene names: 238026025

Gene position: 366275-366793 (Clockwise)

Preceding gene: 238026024

Following gene: 238026026

Centisome position: 9.38

GC content: 68.4

Gene sequence:

>519_bases
ATGCAAGAGACTTCCACGAAGCCGTATCTGCTGCGCGCGCTCTACGAGTGGTGCACGGACAACGGCTATACGCCGCACAT
CGCGGTGCGCGTCGACAACTCGACGCGCGTGCCGCGGCAGTACGTGCGCGACGGCGAGATCGTATTGAACATCAGCTTCG
AGGCGACCACCGCGCTGCAGATGGGCAACGACTGGATCGAATTCACCGCGCGTTTCGCGGGCAAGGCGCACAAGCTGGAG
GTGCCGGTGGCGAACGTGCTCGCGATCTATGCGCGCGAGAACGGGCAGGGCATGGCGTTCCAGGTCGACCTGGCGGCCGA
TGAGCCGGGCGAGACGACGCTGGTCGAAGCCGATGAGGCCGAGAGCGGCGGCGCGGGCGGCTCGCGTTCGGCTGCGGGCG
CGGCCGAGCCCTCGGAAGGCGCGGACGTGCCCTCCGGCTCGGCTCCGCCCTCGCCGTCACCCGACGACGACGGCTCGTCG
GGCAAGAGCAATCGCCCCCGCCTGAAGATCGTGAAATGA

Upstream 100 bases:

>100_bases
GGCGCTGACGCCGTCGGAAAAGGTGATGCGCCGTTAACCGGCCTGCGGCCATCGGTGCGCGCGCGGCGCTGCCGCCGCGC
GCGCCTGTACGAGGACAGTG

Downstream 100 bases:

>100_bases
GGTAGAATTCGCGGCCATGCCGGCTTAGCTCATCTGGTAGAGCAGTTGATTTGTAATCATCAGGTGGCGGGTTCGAGTCC
TGCAGCCGGCACCAATACTG

Product: ClpXP protease specificity-enhancing factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 172; Mature: 172

Protein sequence:

>172_residues
MQETSTKPYLLRALYEWCTDNGYTPHIAVRVDNSTRVPRQYVRDGEIVLNISFEATTALQMGNDWIEFTARFAGKAHKLE
VPVANVLAIYARENGQGMAFQVDLAADEPGETTLVEADEAESGGAGGSRSAAGAAEPSEGADVPSGSAPPSPSPDDDGSS
GKSNRPRLKIVK

Sequences:

>Translated_172_residues
MQETSTKPYLLRALYEWCTDNGYTPHIAVRVDNSTRVPRQYVRDGEIVLNISFEATTALQMGNDWIEFTARFAGKAHKLE
VPVANVLAIYARENGQGMAFQVDLAADEPGETTLVEADEAESGGAGGSRSAAGAAEPSEGADVPSGSAPPSPSPDDDGSS
GKSNRPRLKIVK
>Mature_172_residues
MQETSTKPYLLRALYEWCTDNGYTPHIAVRVDNSTRVPRQYVRDGEIVLNISFEATTALQMGNDWIEFTARFAGKAHKLE
VPVANVLAIYARENGQGMAFQVDLAADEPGETTLVEADEAESGGAGGSRSAAGAAEPSEGADVPSGSAPPSPSPDDDGSS
GKSNRPRLKIVK

Specific function: Seems to act in concert with sspA in the regulation of several proteins during exponential and stationary-phase growth. The exact function of sspB is not yet known [H]

COG id: COG2969

COG function: function code R; Stringent starvation protein B

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789623, Length=122, Percent_Identity=48.3606557377049, Blast_Score=113, Evalue=8e-27,

Paralogues:

None

Copy number: 297 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007481 [H]

Pfam domain/function: PF04386 SspB [H]

EC number: NA

Molecular weight: Translated: 18282; Mature: 18282

Theoretical pI: Translated: 4.44; Mature: 4.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQETSTKPYLLRALYEWCTDNGYTPHIAVRVDNSTRVPRQYVRDGEIVLNISFEATTALQ
CCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHCCCCEEEEEECCEEEEEC
MGNDWIEFTARFAGKAHKLEVPVANVLAIYARENGQGMAFQVDLAADEPGETTLVEADEA
CCCHHHHHHHHHCCCCEEEECCHHHEEEEEEECCCCCEEEEEEECCCCCCCEEEEECCCC
ESGGAGGSRSAAGAAEPSEGADVPSGSAPPSPSPDDDGSSGKSNRPRLKIVK
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEC
>Mature Secondary Structure
MQETSTKPYLLRALYEWCTDNGYTPHIAVRVDNSTRVPRQYVRDGEIVLNISFEATTALQ
CCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHCCCCEEEEEECCEEEEEC
MGNDWIEFTARFAGKAHKLEVPVANVLAIYARENGQGMAFQVDLAADEPGETTLVEADEA
CCCHHHHHHHHHCCCCEEEECCHHHEEEEEEECCCCCEEEEEEECCCCCCCEEEEECCCC
ESGGAGGSRSAAGAAEPSEGADVPSGSAPPSPSPDDDGSSGKSNRPRLKIVK
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]