| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is mrcA [H]
Identifier: 238025972
GI number: 238025972
Start: 312156
End: 314597
Strand: Reverse
Name: mrcA [H]
Synonym: bglu_1g02980
Alternate gene names: 238025972
Gene position: 314597-312156 (Counterclockwise)
Preceding gene: 238025985
Following gene: 238025970
Centisome position: 8.05
GC content: 68.63
Gene sequence:
>2442_bases ATGCCTATGCACCCCACGACTCCCCCGCCCCCGCCGCCGGCCTCGGAACCGCCTCCGCCCCAGCCGCCGGCTGTCGAACC GCCGCCTCCCCCGCCGCCGCCGCCGCGCAAGCGGCCGCTATGGCTGAAGCTGCTGCTCGGCTTCGTCGGCCTGTGCGTGG CGCTCGCGCTGTGCGCGGGGCTGGTGCTCGGCTACGCGCTGGTGGTGGCCTGGCCGAACATGCCCTCGCTCGACGCGCTC ACCGACTACCGGCCGAAGGTGCCGCTGCGCATCTACACGGCCGATCACGTGCTAATCGGCGAGTTCGGCGAGGAGCGCCG CGACGTCGTCCATATCCAGGACGTGCCGGATTCGCTGAAGAAGGCGATCCTCGCGATCGAGGACGCGCGCTTCTACGAGC ACGGCGGCGTCGACCTGATGGGCATCGCGCGCGCCGGCATGGTGGCGCTGACCAACGGCCACGCCACGCAGGGCGCGAGC ACGATCACGATGCAGGTCGCGCGCAACTTCTTCCTGTCGAGCGAGAAGACCTACACGCGCAAGATCTACGAGATGCTGCT GTCGTACCGGATCGAGCGCGCGCTGACGAAGGATCAGATTCTCGAGGTCTACATGAATCAGATCTATCTCGGCCAGCGTG CCTACGGCTTCGCGAGCGCGGCGCGCGTCTACTTCGGCAAGGACCTCAAGGACCTCACGCTGGCCGAGGCGGCAATGCTC GCGGGGCTGCCGAAGGCGCCGTCGGCCTACAATCCGGTGGTCAACCCGAAGCGCGCCAAGGTGCGCCAGCAGTACATCCT CGAGCGCATGCTCGAGCTGAACTTCATCACGCGCGCGCAATACGACGAGGCGGTCGCGCAGCCGCTGGTGGTCAAGAGCG CGACGCGCGAATACAGCGTCCACGCCGAGTACATCGCCGAGATGGTGCGGCAGATGATGTACGCGCAATACAAGGACGAA ACCTACACGCGTGGCTTCAACGTCGTGACGACGGTCGACTCGGCGGACCAGACGCTCGCCTACCAGGCGCTGCGCCGCGG CCTGATGGACTACGAGCGCCGCCACGGCTATCGCGGCCCGGAGGCGTTCATCGAGCTGCCGGCCGAGCCCGCCCAGCGCG AGCAGGCGATCGCCGACGCGCTGCTCGACCACCCCGACAACGGCGAGCTGATCGCGGCGGTGGTCACCGACGCGAATCCG AAGCAGGTGCGCATCGCCTTCGCCGACGGCAGCGGCACGACGCTCGAAGGCCCGGGCCTGCGCTTCGCCGCGGCCTCGCT GGCCGCCAACGCGCAGCCGAACCGGCGCATCCGGCCCGGCGCGATCGTGCGCGTGATGAAGAACGACGGCGGCGACTGGG CAATCACGCAACTGCCGCAGATCGAGGGCGCGTTCGTCTCGATCGTGCCGCAGGACGGCGCGATCCGCTCGCTGGTGGGC GGCTTCGACTTCAACAAGAACAAGTTCAACCACGTCACGCAGGCGTGGCGCCAGCCCGGTTCGAGCTTCAAGCCGTTCAT CTACTCGGCCTCGCTCGACAAGGGCCTGGGGCCGGCCACCATCATCAACGACGCGCCGCTGTTCTTCAGCGCGGCCGAGA CGGGTGGCCAGCCGTGGGAGCCGAAGAACTACGGCGGCGGCTTCGACGGGCCTGAGCCGATGCGCACGGCGCTGATGCGC TCGCGCAACCTGGTCTCGATCCGGATCCTCAATTACATCGGCACCAAGTATGCGCAGCAGTACATCACGCGCTTCGGCTT CGACGCCGAGCGCCATCCGGCCTACCTGCCGATGGCGCTCGGCGCGGGGCTCGTCACGCCGCTGCAGATGGCGGGCGCCT ACTCGGTGTTCGCCAACGGCGGCTATCGCGTGAACCCGTACCTGATCGCCGAGGTGACCGATTCGAGCGGCAACGTGGTG GCGCGCGCACAGCCGCTGGTGGCCGGGCAGAGCGCACCGCGCGCGATCGACGCGCGCAACGCCTACGTGATGAACAGCCT GCTGCAGAGCGTGGCGCAGCGCGGCACCGGCGCGAAGACCAACGTGCTCAAGCGCACCGACCTGGGCGGCAAGACCGGCA CCACCAACGATTCGCGCGACGCGTGGTTCGCGGGCTTCCAGCACACGCTCGCCGCGATCGCCTGGATCGGCTACGACAAC CCGCGCAGCCTCGGCGACCGCGAGACGGGCGGCGGCCTCGCGCTGCCGGTCTGGATCGACTACATGGGGCCGTCGCTGAA GAACGTGCCCGAGTACAAGATGCCGATGCCCGACGGCGTCACGACCATCGGCGACGAGCTGTTCTTCAGCGAATTCACGC CGGGCCACGGCTTCGTGTCGACCATCGGCGTGCAGGCGGCCTCACCCGACGACGCGTCGATCCCGCACGTCGACGCGCAG GAAAAGCAGGACATCATGAACCTGTTCCAGGGCGGCAACTGA
Upstream 100 bases:
>100_bases ACGGCCGGCCGGCCCGAGGCAGGCCGGCGCGACGCGGAACGCGCCGATGCACCAGGAATGCCCATAGCGGACGTTTATAA TCGCTGCACTGTTTTCCGGT
Downstream 100 bases:
>100_bases GGCGCCGCACCGCCCTGCCACGAAAAAAGAGCGACCCGCGGGTCGCTCTTTTTCCATCGGCACCACGCTCGGCCGCTGCG CTCAGGCGCTGAACCTCACC
Product: Penicillin-binding protein, 1A family
Products: NA
Alternate protein names: PBP-1a; PBP1a; Penicillin-insensitive transglycosylase; Peptidoglycan TGase; Penicillin-sensitive transpeptidase; DD-transpeptidase [H]
Number of amino acids: Translated: 813; Mature: 812
Protein sequence:
>813_residues MPMHPTTPPPPPPASEPPPPQPPAVEPPPPPPPPPRKRPLWLKLLLGFVGLCVALALCAGLVLGYALVVAWPNMPSLDAL TDYRPKVPLRIYTADHVLIGEFGEERRDVVHIQDVPDSLKKAILAIEDARFYEHGGVDLMGIARAGMVALTNGHATQGAS TITMQVARNFFLSSEKTYTRKIYEMLLSYRIERALTKDQILEVYMNQIYLGQRAYGFASAARVYFGKDLKDLTLAEAAML AGLPKAPSAYNPVVNPKRAKVRQQYILERMLELNFITRAQYDEAVAQPLVVKSATREYSVHAEYIAEMVRQMMYAQYKDE TYTRGFNVVTTVDSADQTLAYQALRRGLMDYERRHGYRGPEAFIELPAEPAQREQAIADALLDHPDNGELIAAVVTDANP KQVRIAFADGSGTTLEGPGLRFAAASLAANAQPNRRIRPGAIVRVMKNDGGDWAITQLPQIEGAFVSIVPQDGAIRSLVG GFDFNKNKFNHVTQAWRQPGSSFKPFIYSASLDKGLGPATIINDAPLFFSAAETGGQPWEPKNYGGGFDGPEPMRTALMR SRNLVSIRILNYIGTKYAQQYITRFGFDAERHPAYLPMALGAGLVTPLQMAGAYSVFANGGYRVNPYLIAEVTDSSGNVV ARAQPLVAGQSAPRAIDARNAYVMNSLLQSVAQRGTGAKTNVLKRTDLGGKTGTTNDSRDAWFAGFQHTLAAIAWIGYDN PRSLGDRETGGGLALPVWIDYMGPSLKNVPEYKMPMPDGVTTIGDELFFSEFTPGHGFVSTIGVQAASPDDASIPHVDAQ EKQDIMNLFQGGN
Sequences:
>Translated_813_residues MPMHPTTPPPPPPASEPPPPQPPAVEPPPPPPPPPRKRPLWLKLLLGFVGLCVALALCAGLVLGYALVVAWPNMPSLDAL TDYRPKVPLRIYTADHVLIGEFGEERRDVVHIQDVPDSLKKAILAIEDARFYEHGGVDLMGIARAGMVALTNGHATQGAS TITMQVARNFFLSSEKTYTRKIYEMLLSYRIERALTKDQILEVYMNQIYLGQRAYGFASAARVYFGKDLKDLTLAEAAML AGLPKAPSAYNPVVNPKRAKVRQQYILERMLELNFITRAQYDEAVAQPLVVKSATREYSVHAEYIAEMVRQMMYAQYKDE TYTRGFNVVTTVDSADQTLAYQALRRGLMDYERRHGYRGPEAFIELPAEPAQREQAIADALLDHPDNGELIAAVVTDANP KQVRIAFADGSGTTLEGPGLRFAAASLAANAQPNRRIRPGAIVRVMKNDGGDWAITQLPQIEGAFVSIVPQDGAIRSLVG GFDFNKNKFNHVTQAWRQPGSSFKPFIYSASLDKGLGPATIINDAPLFFSAAETGGQPWEPKNYGGGFDGPEPMRTALMR SRNLVSIRILNYIGTKYAQQYITRFGFDAERHPAYLPMALGAGLVTPLQMAGAYSVFANGGYRVNPYLIAEVTDSSGNVV ARAQPLVAGQSAPRAIDARNAYVMNSLLQSVAQRGTGAKTNVLKRTDLGGKTGTTNDSRDAWFAGFQHTLAAIAWIGYDN PRSLGDRETGGGLALPVWIDYMGPSLKNVPEYKMPMPDGVTTIGDELFFSEFTPGHGFVSTIGVQAASPDDASIPHVDAQ EKQDIMNLFQGGN >Mature_812_residues PMHPTTPPPPPPASEPPPPQPPAVEPPPPPPPPPRKRPLWLKLLLGFVGLCVALALCAGLVLGYALVVAWPNMPSLDALT DYRPKVPLRIYTADHVLIGEFGEERRDVVHIQDVPDSLKKAILAIEDARFYEHGGVDLMGIARAGMVALTNGHATQGAST ITMQVARNFFLSSEKTYTRKIYEMLLSYRIERALTKDQILEVYMNQIYLGQRAYGFASAARVYFGKDLKDLTLAEAAMLA GLPKAPSAYNPVVNPKRAKVRQQYILERMLELNFITRAQYDEAVAQPLVVKSATREYSVHAEYIAEMVRQMMYAQYKDET YTRGFNVVTTVDSADQTLAYQALRRGLMDYERRHGYRGPEAFIELPAEPAQREQAIADALLDHPDNGELIAAVVTDANPK QVRIAFADGSGTTLEGPGLRFAAASLAANAQPNRRIRPGAIVRVMKNDGGDWAITQLPQIEGAFVSIVPQDGAIRSLVGG FDFNKNKFNHVTQAWRQPGSSFKPFIYSASLDKGLGPATIINDAPLFFSAAETGGQPWEPKNYGGGFDGPEPMRTALMRS RNLVSIRILNYIGTKYAQQYITRFGFDAERHPAYLPMALGAGLVTPLQMAGAYSVFANGGYRVNPYLIAEVTDSSGNVVA RAQPLVAGQSAPRAIDARNAYVMNSLLQSVAQRGTGAKTNVLKRTDLGGKTGTTNDSRDAWFAGFQHTLAAIAWIGYDNP RSLGDRETGGGLALPVWIDYMGPSLKNVPEYKMPMPDGVTTIGDELFFSEFTPGHGFVSTIGVQAASPDDASIPHVDAQE KQDIMNLFQGGN
Specific function: Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal
COG id: COG5009
COG function: function code M; Membrane carboxypeptidase/penicillin-binding protein
Gene ontology:
Cell location: Cell inner membrane; Single-pass type II membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the transpeptidase family [H]
Homologues:
Organism=Escherichia coli, GI87082258, Length=839, Percent_Identity=37.7830750893921, Blast_Score=540, Evalue=1e-154, Organism=Escherichia coli, GI1786343, Length=249, Percent_Identity=38.1526104417671, Blast_Score=148, Evalue=1e-36, Organism=Escherichia coli, GI1788867, Length=228, Percent_Identity=34.2105263157895, Blast_Score=120, Evalue=3e-28, Organism=Escherichia coli, GI1789601, Length=178, Percent_Identity=33.7078651685393, Blast_Score=94, Evalue=4e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR001264 - InterPro: IPR011816 - InterPro: IPR001460 [H]
Pfam domain/function: PF00912 Transgly; PF00905 Transpeptidase [H]
EC number: 2.4.2.-; 3.4.-.- [C]
Molecular weight: Translated: 88788; Mature: 88657
Theoretical pI: Translated: 7.46; Mature: 7.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPMHPTTPPPPPPASEPPPPQPPAVEPPPPPPPPPRKRPLWLKLLLGFVGLCVALALCAG CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH LVLGYALVVAWPNMPSLDALTDYRPKVPLRIYTADHVLIGEFGEERRDVVHIQDVPDSLK HHHHHHHHHCCCCCCCCHHHHCCCCCCCEEEEECCEEEECCCCCCCCCEEEEECCCHHHH KAILAIEDARFYEHGGVDLMGIARAGMVALTNGHATQGASTITMQVARNFFLSSEKTYTR HHHHHHHHHHHHHCCCCEEEEHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCHHHHH KIYEMLLSYRIERALTKDQILEVYMNQIYLGQRAYGFASAARVYFGKDLKDLTLAEAAML HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH AGLPKAPSAYNPVVNPKRAKVRQQYILERMLELNFITRAQYDEAVAQPLVVKSATREYSV HCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHH HAEYIAEMVRQMMYAQYKDETYTRGFNVVTTVDSADQTLAYQALRRGLMDYERRHGYRGP HHHHHHHHHHHHHHHHHCCCHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCC EAFIELPAEPAQREQAIADALLDHPDNGELIAAVVTDANPKQVRIAFADGSGTTLEGPGL HHHEECCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEEEEECCCCCEECCCCC RFAAASLAANAQPNRRIRPGAIVRVMKNDGGDWAITQLPQIEGAFVSIVPQDGAIRSLVG HHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCEEEEECCCCHHHHHHC GFDFNKNKFNHVTQAWRQPGSSFKPFIYSASLDKGLGPATIINDAPLFFSAAETGGQPWE CCCCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCEEEECCCCCEEEEHHCCCCCCC PKNYGGGFDGPEPMRTALMRSRNLVSIRILNYIGTKYAQQYITRFGFDAERHPAYLPMAL CCCCCCCCCCCHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHH GAGLVTPLQMAGAYSVFANGGYRVNPYLIAEVTDSSGNVVARAQPLVAGQSAPRAIDARN CCCHHHHHHHHCCEEEEECCCEEECCEEEEEEECCCCCEEEECCCEECCCCCCCCCCCCH AYVMNSLLQSVAQRGTGAKTNVLKRTDLGGKTGTTNDSRDAWFAGFQHTLAAIAWIGYDN HHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC PRSLGDRETGGGLALPVWIDYMGPSLKNVPEYKMPMPDGVTTIGDELFFSEFTPGHGFVS CCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHH TIGVQAASPDDASIPHVDAQEKQDIMNLFQGGN HHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC >Mature Secondary Structure PMHPTTPPPPPPASEPPPPQPPAVEPPPPPPPPPRKRPLWLKLLLGFVGLCVALALCAG CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH LVLGYALVVAWPNMPSLDALTDYRPKVPLRIYTADHVLIGEFGEERRDVVHIQDVPDSLK HHHHHHHHHCCCCCCCCHHHHCCCCCCCEEEEECCEEEECCCCCCCCCEEEEECCCHHHH KAILAIEDARFYEHGGVDLMGIARAGMVALTNGHATQGASTITMQVARNFFLSSEKTYTR HHHHHHHHHHHHHCCCCEEEEHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCHHHHH KIYEMLLSYRIERALTKDQILEVYMNQIYLGQRAYGFASAARVYFGKDLKDLTLAEAAML HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH AGLPKAPSAYNPVVNPKRAKVRQQYILERMLELNFITRAQYDEAVAQPLVVKSATREYSV HCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHH HAEYIAEMVRQMMYAQYKDETYTRGFNVVTTVDSADQTLAYQALRRGLMDYERRHGYRGP HHHHHHHHHHHHHHHHHCCCHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCC EAFIELPAEPAQREQAIADALLDHPDNGELIAAVVTDANPKQVRIAFADGSGTTLEGPGL HHHEECCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEEEEECCCCCEECCCCC RFAAASLAANAQPNRRIRPGAIVRVMKNDGGDWAITQLPQIEGAFVSIVPQDGAIRSLVG HHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCEEEEECCCCHHHHHHC GFDFNKNKFNHVTQAWRQPGSSFKPFIYSASLDKGLGPATIINDAPLFFSAAETGGQPWE CCCCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCEEEECCCCCEEEEHHCCCCCCC PKNYGGGFDGPEPMRTALMRSRNLVSIRILNYIGTKYAQQYITRFGFDAERHPAYLPMAL CCCCCCCCCCCHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHH GAGLVTPLQMAGAYSVFANGGYRVNPYLIAEVTDSSGNVVARAQPLVAGQSAPRAIDARN CCCHHHHHHHHCCEEEEECCCEEECCEEEEEEECCCCCEEEECCCEECCCCCCCCCCCCH AYVMNSLLQSVAQRGTGAKTNVLKRTDLGGKTGTTNDSRDAWFAGFQHTLAAIAWIGYDN HHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC PRSLGDRETGGGLALPVWIDYMGPSLKNVPEYKMPMPDGVTTIGDELFFSEFTPGHGFVS CCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHH TIGVQAASPDDASIPHVDAQEKQDIMNLFQGGN HHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Transferases; Acyltransferases; Aminoacyltransferases [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA