Definition Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence.
Accession NC_012724
Length 3,906,507

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The map label for this gene is 238025842

Identifier: 238025842

GI number: 238025842

Start: 174794

End: 177166

Strand: Reverse

Name: 238025842

Synonym: bglu_1g01680

Alternate gene names: NA

Gene position: 177166-174794 (Counterclockwise)

Preceding gene: 238025843

Following gene: 238025841

Centisome position: 4.54

GC content: 69.83

Gene sequence:

>2373_bases
ATGTCCGACCCGATGCCGTCCACCCGCTCCGCGCCCGATGATCCGCAGTTCGACGCGGACATCGCGCTCGTGATGCAGAG
CGCGATCGCCTGCCATCACAACGGCGAGTTCGCCGATGCCAAGGCCATGTACGAGGTGGTCATCGCGGCCCGGCCGAACC
ACGCGGACGCACGCTACAACCTGGCGGTGCTGAACGTGCAGACCGGCAACCCGGAGGCGGCGCTGCCGCACTTCGAAGTC
GCGCTCGGCGTCGATCCGAACAACGGCCAGTTCTGGGTGGCCTACATCAACGCGCAGATCGAGGCGGGCCGCGCGGCGGC
CGCCTGGGCGATGATCGGCATGTGCCAGCAGCGCGGCATCCGCGGCCCGGCGCTCGACGGCCTGATCCAGCGCCTGTCGA
TCTCGGAGGAGGGACGCGCGGCCACGGTCGGCACCGCCGCCGCCGGCCACACGGTGGCGGCCACGCCCGCGCCCGCCGCC
GACGAGGCGCCGGTCAACGCGGACCCGCGCGGCGGCCTCGCGCGCCGGCCGACCCAGCAGGACATCACGCGCTTCACCGC
GCTCTACAACAAAGGCCGCTACGCCGACGCGGTCAAGCACGCACGCACCATGACGGAGCGCTATCCGGGTAGCGCCTATG
CCTGGAAGTCGCTCAGCAACGCGCTGCACAAGCATGGCGAGTATCTGGCCGCAGCCGAGCCGCTGGCACGCGCCACCACG
CTCGATCCCGCCGACGTGGTGCTCGGCACGCTCTATGCGGACGTGCTGCGCCTGGCCAACCGGCTCGCCGATTCCGAGCG
CGAAGCGCGCCGCGTGATCGCGGTGGACGACAGCCATGCCGAAGCGTGGCGCGTGCTGAACATGACGTTGCTCGCGCAGG
GCCGCAGCACCGAGGCGATCGCGGCCGGCAACCGCTCGGTCGAACTCGCGCCCGATTCGCTGCAGATGTACGGCTCGCTC
GGCGTGGCGCTGAGCGAACTGGGCGCCACCCTGGAGGCCGAACAGGCGTTCCGCCGTGCCCACGAGCTGATGCCGCGCGA
CGCCGCGATGCACAGCAACCTGCTGTTCTGCATGACCCATGATCCGCAGCTCGACAGCGAGACGATCTTCGCCGCGCACC
GTCGCTTCGCCGACATTCACGAGGCGCCGGTACGCTCGCGCTGGCCGCGTCACCCCAACAAGCGCGATCCGGAGCGCAAG
CTGCGCGTCGGCATCATCTCGGGTGACCTGTTCAATCACGCGGTGTCGTCATACGTCATGCCGATCCTGGAAGTGCTGCA
CCGCGATCCGTCTCTGTCGCTGCACGTCTACCACAATCACACCACCGAGGACGGCGTCACCGAGCGCATGCGCGGCTGGA
CCGACAGCTGGCTGCAGGTGGCGGGCCTGACCGACGACCGTCTGGTCGAGCGGATCCGCTCCGACCGTATCGACATCATG
CTCGACCTGTCGAGCCACACCGGCCGCAACCGCCTGACCGCACTCGCGCGCAAGCCCGCGCCCGTGCAAATCACCTGGGT
CGGCTATCCCGGCACGACCGGGCTCGACGCGATGGACTACTACTTCGCGGACCGCTACGGCGTGCCGTTCGGCGAGATGG
AGCGCCAGTACACCGAAAAAATCATCCACCTGCCGGCGGGCGGTACCTTCAAGCCCGTCGACAACGCCCCACCCGTCAAC
CTCCTGCCCGCGCTGCACAACGGCTTCGTGACGTTCGGCAGCTTTAACCGTCTGAACAAGCTGCGCCGCGAGGTGATCGC
AGTGTGGGCGCGGATTCTGCACGCGGTGCCGAACTCGCGCATGCGGGTCGGCTCGGTTCCGCGCGTGGGCGGTGTGGACA
TGCTGCTCGAATGGTTCACGGCCGAGGGCATCGCACACCAACGGCTCGACCTGCAGCCGCGCGCGCCGGCCGCCGTCTAC
CTGCAGCAGCATCACCACGTCGATTTCTGCCTCGACACCTTCCCGTACACCGGCTCGACCACCGCGCTCAACGCGCTCTG
GATGGGCGTGCCGACTCTGACGATCCGCGGCGGCACGCTGGCGAGCCGCGCAGGCGCGGTCTGGATGTCGTCGGTTGGAC
TCGAGCAGTTCGTGGCGGACAGCCCCGACGATTTCGTCGCCCGCGGCATCGCGCTCGCCAATGACGTACAAGGACTCGCC
GCGGTGCGACGCGGCCTACGCGATCGCTGCCGGCAGTCGCCGGGCTTCCAGCCCGAGCGCATCGCCAACGCGGTGTCCGA
CGCGTTCCGGATGGCCTGGCGGCGCTGGTGTGCCGACGAGGCGCCGGCCCCGTTCACGGTGCCGGAGCGCGCCGCTACCG
GCGCCAGCGCCGATTCCGCGGCCGCCGAGACCGCCCTCACCGGAGACGCATGA

Upstream 100 bases:

>100_bases
CCATAAAACTGACGGCGGTTTACCAGTCAGTTCCGGGCTTCGGCAGGCCGCGCGCCGCCGGATAATTTCCATCATTCGCT
ATCTCCGTTCGAATTCCGCC

Downstream 100 bases:

>100_bases
TGAACGCCCTGCCGTTACGCGTAGTCGAGCCCCAGGCCGATGAACGCATCTATGTGACGCAGCCGCACCTGCCGCCGCTG
GCCGAGTTCCTGCCGTATCT

Product: TPR domain-containing protein

Products: NA

Alternate protein names: O-Linked N-Acetylglucosamine Transferase; Tetratricopeptide TPR_2 Repeat Protein; TPR Domain-Containing Protein; Methyltransferase Type; SPINDLY Family O-Linked N-Acetylglucosamine Transferase; Tetratricopeptide TPR_1 Repeat-Containing Protein; TPR Repeat Protein; TPR Domain Protein; Glycosyl Transferase Family Protein; FkbM Family Methyltransferase; Tetratricopeptide Repeat-Containing Protein; SPY Protein; Glycosyltransferase TPR Domain Protein; Tpr Repeat-Containing Protein; Porphyrin Biosynthesis Protein; Transferase; Tetratricopeptide Repeat Family Protein; Sulfotransferase; TPR Domain/SEC-C Motif Domain Protein; TPR Repeat; O-Linked N-Acetylglucosamine TransferaNDLY Family; Tetratricopeptide Repeat Protein; O-Linked Acetylglucosamine Transferase; Glycosyltransferase TPR Domain-Containing Protein; Methyltransferase Regulatory Domain; Tetratricopeptide Domain Protein; TPR Repeat Domain-Containing Protein; TPR Repeat-Containing Glycosyl Transferase; O-Linked GLCNAC Transferase; Glycosyl Transferase TPR Repeat Protein; Glycosyl Transferase

Number of amino acids: Translated: 790; Mature: 789

Protein sequence:

>790_residues
MSDPMPSTRSAPDDPQFDADIALVMQSAIACHHNGEFADAKAMYEVVIAARPNHADARYNLAVLNVQTGNPEAALPHFEV
ALGVDPNNGQFWVAYINAQIEAGRAAAAWAMIGMCQQRGIRGPALDGLIQRLSISEEGRAATVGTAAAGHTVAATPAPAA
DEAPVNADPRGGLARRPTQQDITRFTALYNKGRYADAVKHARTMTERYPGSAYAWKSLSNALHKHGEYLAAAEPLARATT
LDPADVVLGTLYADVLRLANRLADSEREARRVIAVDDSHAEAWRVLNMTLLAQGRSTEAIAAGNRSVELAPDSLQMYGSL
GVALSELGATLEAEQAFRRAHELMPRDAAMHSNLLFCMTHDPQLDSETIFAAHRRFADIHEAPVRSRWPRHPNKRDPERK
LRVGIISGDLFNHAVSSYVMPILEVLHRDPSLSLHVYHNHTTEDGVTERMRGWTDSWLQVAGLTDDRLVERIRSDRIDIM
LDLSSHTGRNRLTALARKPAPVQITWVGYPGTTGLDAMDYYFADRYGVPFGEMERQYTEKIIHLPAGGTFKPVDNAPPVN
LLPALHNGFVTFGSFNRLNKLRREVIAVWARILHAVPNSRMRVGSVPRVGGVDMLLEWFTAEGIAHQRLDLQPRAPAAVY
LQQHHHVDFCLDTFPYTGSTTALNALWMGVPTLTIRGGTLASRAGAVWMSSVGLEQFVADSPDDFVARGIALANDVQGLA
AVRRGLRDRCRQSPGFQPERIANAVSDAFRMAWRRWCADEAPAPFTVPERAATGASADSAAAETALTGDA

Sequences:

>Translated_790_residues
MSDPMPSTRSAPDDPQFDADIALVMQSAIACHHNGEFADAKAMYEVVIAARPNHADARYNLAVLNVQTGNPEAALPHFEV
ALGVDPNNGQFWVAYINAQIEAGRAAAAWAMIGMCQQRGIRGPALDGLIQRLSISEEGRAATVGTAAAGHTVAATPAPAA
DEAPVNADPRGGLARRPTQQDITRFTALYNKGRYADAVKHARTMTERYPGSAYAWKSLSNALHKHGEYLAAAEPLARATT
LDPADVVLGTLYADVLRLANRLADSEREARRVIAVDDSHAEAWRVLNMTLLAQGRSTEAIAAGNRSVELAPDSLQMYGSL
GVALSELGATLEAEQAFRRAHELMPRDAAMHSNLLFCMTHDPQLDSETIFAAHRRFADIHEAPVRSRWPRHPNKRDPERK
LRVGIISGDLFNHAVSSYVMPILEVLHRDPSLSLHVYHNHTTEDGVTERMRGWTDSWLQVAGLTDDRLVERIRSDRIDIM
LDLSSHTGRNRLTALARKPAPVQITWVGYPGTTGLDAMDYYFADRYGVPFGEMERQYTEKIIHLPAGGTFKPVDNAPPVN
LLPALHNGFVTFGSFNRLNKLRREVIAVWARILHAVPNSRMRVGSVPRVGGVDMLLEWFTAEGIAHQRLDLQPRAPAAVY
LQQHHHVDFCLDTFPYTGSTTALNALWMGVPTLTIRGGTLASRAGAVWMSSVGLEQFVADSPDDFVARGIALANDVQGLA
AVRRGLRDRCRQSPGFQPERIANAVSDAFRMAWRRWCADEAPAPFTVPERAATGASADSAAAETALTGDA
>Mature_789_residues
SDPMPSTRSAPDDPQFDADIALVMQSAIACHHNGEFADAKAMYEVVIAARPNHADARYNLAVLNVQTGNPEAALPHFEVA
LGVDPNNGQFWVAYINAQIEAGRAAAAWAMIGMCQQRGIRGPALDGLIQRLSISEEGRAATVGTAAAGHTVAATPAPAAD
EAPVNADPRGGLARRPTQQDITRFTALYNKGRYADAVKHARTMTERYPGSAYAWKSLSNALHKHGEYLAAAEPLARATTL
DPADVVLGTLYADVLRLANRLADSEREARRVIAVDDSHAEAWRVLNMTLLAQGRSTEAIAAGNRSVELAPDSLQMYGSLG
VALSELGATLEAEQAFRRAHELMPRDAAMHSNLLFCMTHDPQLDSETIFAAHRRFADIHEAPVRSRWPRHPNKRDPERKL
RVGIISGDLFNHAVSSYVMPILEVLHRDPSLSLHVYHNHTTEDGVTERMRGWTDSWLQVAGLTDDRLVERIRSDRIDIML
DLSSHTGRNRLTALARKPAPVQITWVGYPGTTGLDAMDYYFADRYGVPFGEMERQYTEKIIHLPAGGTFKPVDNAPPVNL
LPALHNGFVTFGSFNRLNKLRREVIAVWARILHAVPNSRMRVGSVPRVGGVDMLLEWFTAEGIAHQRLDLQPRAPAAVYL
QQHHHVDFCLDTFPYTGSTTALNALWMGVPTLTIRGGTLASRAGAVWMSSVGLEQFVADSPDDFVARGIALANDVQGLAA
VRRGLRDRCRQSPGFQPERIANAVSDAFRMAWRRWCADEAPAPFTVPERAATGASADSAAAETALTGDA

Specific function: Unknown

COG id: COG3914

COG function: function code O; Predicted O-linked N-acetylglucosamine transferase, SPINDLY family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI32307150, Length=576, Percent_Identity=23.7847222222222, Blast_Score=110, Evalue=7e-24,
Organism=Homo sapiens, GI32307148, Length=576, Percent_Identity=23.7847222222222, Blast_Score=109, Evalue=9e-24,
Organism=Caenorhabditis elegans, GI115532690, Length=567, Percent_Identity=23.6331569664903, Blast_Score=110, Evalue=4e-24,
Organism=Caenorhabditis elegans, GI115532692, Length=567, Percent_Identity=23.6331569664903, Blast_Score=109, Evalue=6e-24,
Organism=Drosophila melanogaster, GI17647755, Length=559, Percent_Identity=23.2558139534884, Blast_Score=107, Evalue=3e-23,
Organism=Drosophila melanogaster, GI24585827, Length=559, Percent_Identity=23.2558139534884, Blast_Score=107, Evalue=3e-23,
Organism=Drosophila melanogaster, GI24585829, Length=559, Percent_Identity=23.2558139534884, Blast_Score=107, Evalue=3e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 86343; Mature: 86212

Theoretical pI: Translated: 6.82; Mature: 6.82

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDPMPSTRSAPDDPQFDADIALVMQSAIACHHNGEFADAKAMYEVVIAARPNHADARYN
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHEEECCCCCCCEEE
LAVLNVQTGNPEAALPHFEVALGVDPNNGQFWVAYINAQIEAGRAAAAWAMIGMCQQRGI
EEEEEEECCCCCCCCCCEEEEEEECCCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHCCC
RGPALDGLIQRLSISEEGRAATVGTAAAGHTVAATPAPAADEAPVNADPRGGLARRPTQQ
CCCHHHHHHHHHCCCCCCCEEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHH
DITRFTALYNKGRYADAVKHARTMTERYPGSAYAWKSLSNALHKHGEYLAAAEPLARATT
HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHCHHHHHCC
LDPADVVLGTLYADVLRLANRLADSEREARRVIAVDDSHAEAWRVLNMTLLAQGRSTEAI
CCHHHHHHHHHHHHHHHHHHHHCCCHHHCCEEEEEECCCHHHHHHHHHHEEECCCCCCEE
AAGNRSVELAPDSLQMYGSLGVALSELGATLEAEQAFRRAHELMPRDAAMHSNLLFCMTH
ECCCCEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHCCEEEEEEC
DPQLDSETIFAAHRRFADIHEAPVRSRWPRHPNKRDPERKLRVGIISGDLFNHAVSSYVM
CCCCCCHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCHHEEEEEEECHHHHHHHHHHHH
PILEVLHRDPSLSLHVYHNHTTEDGVTERMRGWTDSWLQVAGLTDDRLVERIRSDRIDIM
HHHHHHCCCCCCEEEEEECCCCCCHHHHHHCCCCHHHHEECCCCHHHHHHHHHCCCEEEE
LDLSSHTGRNRLTALARKPAPVQITWVGYPGTTGLDAMDYYFADRYGVPFGEMERQYTEK
EEECCCCCCHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHH
IIHLPAGGTFKPVDNAPPVNLLPALHNGFVTFGSFNRLNKLRREVIAVWARILHAVPNSR
EEECCCCCCCCCCCCCCCCCHHHHHHCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCC
MRVGSVPRVGGVDMLLEWFTAEGIAHQRLDLQPRAPAAVYLQQHHHVDFCLDTFPYTGST
EEECCCCCCCCHHHHHHHHHHCCCHHHHCCCCCCCCHHHHHHHCCCEEEEECCCCCCCCH
TALNALWMGVPTLTIRGGTLASRAGAVWMSSVGLEQFVADSPDDFVARGIALANDVQGLA
HHHHHHHHCCCEEEEECCCHHHHCCHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHH
AVRRGLRDRCRQSPGFQPERIANAVSDAFRMAWRRWCADEAPAPFTVPERAATGASADSA
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCCCCHH
AAETALTGDA
HHHHHCCCCC
>Mature Secondary Structure 
SDPMPSTRSAPDDPQFDADIALVMQSAIACHHNGEFADAKAMYEVVIAARPNHADARYN
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHEEECCCCCCCEEE
LAVLNVQTGNPEAALPHFEVALGVDPNNGQFWVAYINAQIEAGRAAAAWAMIGMCQQRGI
EEEEEEECCCCCCCCCCEEEEEEECCCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHCCC
RGPALDGLIQRLSISEEGRAATVGTAAAGHTVAATPAPAADEAPVNADPRGGLARRPTQQ
CCCHHHHHHHHHCCCCCCCEEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHH
DITRFTALYNKGRYADAVKHARTMTERYPGSAYAWKSLSNALHKHGEYLAAAEPLARATT
HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHCHHHHHCC
LDPADVVLGTLYADVLRLANRLADSEREARRVIAVDDSHAEAWRVLNMTLLAQGRSTEAI
CCHHHHHHHHHHHHHHHHHHHHCCCHHHCCEEEEEECCCHHHHHHHHHHEEECCCCCCEE
AAGNRSVELAPDSLQMYGSLGVALSELGATLEAEQAFRRAHELMPRDAAMHSNLLFCMTH
ECCCCEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHCCEEEEEEC
DPQLDSETIFAAHRRFADIHEAPVRSRWPRHPNKRDPERKLRVGIISGDLFNHAVSSYVM
CCCCCCHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCHHEEEEEEECHHHHHHHHHHHH
PILEVLHRDPSLSLHVYHNHTTEDGVTERMRGWTDSWLQVAGLTDDRLVERIRSDRIDIM
HHHHHHCCCCCCEEEEEECCCCCCHHHHHHCCCCHHHHEECCCCHHHHHHHHHCCCEEEE
LDLSSHTGRNRLTALARKPAPVQITWVGYPGTTGLDAMDYYFADRYGVPFGEMERQYTEK
EEECCCCCCHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHH
IIHLPAGGTFKPVDNAPPVNLLPALHNGFVTFGSFNRLNKLRREVIAVWARILHAVPNSR
EEECCCCCCCCCCCCCCCCCHHHHHHCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCC
MRVGSVPRVGGVDMLLEWFTAEGIAHQRLDLQPRAPAAVYLQQHHHVDFCLDTFPYTGST
EEECCCCCCCCHHHHHHHHHHCCCHHHHCCCCCCCCHHHHHHHCCCEEEEECCCCCCCCH
TALNALWMGVPTLTIRGGTLASRAGAVWMSSVGLEQFVADSPDDFVARGIALANDVQGLA
HHHHHHHHCCCEEEEECCCHHHHCCHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHH
AVRRGLRDRCRQSPGFQPERIANAVSDAFRMAWRRWCADEAPAPFTVPERAATGASADSA
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCCCCHH
AAETALTGDA
HHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA