| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is 238025842
Identifier: 238025842
GI number: 238025842
Start: 174794
End: 177166
Strand: Reverse
Name: 238025842
Synonym: bglu_1g01680
Alternate gene names: NA
Gene position: 177166-174794 (Counterclockwise)
Preceding gene: 238025843
Following gene: 238025841
Centisome position: 4.54
GC content: 69.83
Gene sequence:
>2373_bases ATGTCCGACCCGATGCCGTCCACCCGCTCCGCGCCCGATGATCCGCAGTTCGACGCGGACATCGCGCTCGTGATGCAGAG CGCGATCGCCTGCCATCACAACGGCGAGTTCGCCGATGCCAAGGCCATGTACGAGGTGGTCATCGCGGCCCGGCCGAACC ACGCGGACGCACGCTACAACCTGGCGGTGCTGAACGTGCAGACCGGCAACCCGGAGGCGGCGCTGCCGCACTTCGAAGTC GCGCTCGGCGTCGATCCGAACAACGGCCAGTTCTGGGTGGCCTACATCAACGCGCAGATCGAGGCGGGCCGCGCGGCGGC CGCCTGGGCGATGATCGGCATGTGCCAGCAGCGCGGCATCCGCGGCCCGGCGCTCGACGGCCTGATCCAGCGCCTGTCGA TCTCGGAGGAGGGACGCGCGGCCACGGTCGGCACCGCCGCCGCCGGCCACACGGTGGCGGCCACGCCCGCGCCCGCCGCC GACGAGGCGCCGGTCAACGCGGACCCGCGCGGCGGCCTCGCGCGCCGGCCGACCCAGCAGGACATCACGCGCTTCACCGC GCTCTACAACAAAGGCCGCTACGCCGACGCGGTCAAGCACGCACGCACCATGACGGAGCGCTATCCGGGTAGCGCCTATG CCTGGAAGTCGCTCAGCAACGCGCTGCACAAGCATGGCGAGTATCTGGCCGCAGCCGAGCCGCTGGCACGCGCCACCACG CTCGATCCCGCCGACGTGGTGCTCGGCACGCTCTATGCGGACGTGCTGCGCCTGGCCAACCGGCTCGCCGATTCCGAGCG CGAAGCGCGCCGCGTGATCGCGGTGGACGACAGCCATGCCGAAGCGTGGCGCGTGCTGAACATGACGTTGCTCGCGCAGG GCCGCAGCACCGAGGCGATCGCGGCCGGCAACCGCTCGGTCGAACTCGCGCCCGATTCGCTGCAGATGTACGGCTCGCTC GGCGTGGCGCTGAGCGAACTGGGCGCCACCCTGGAGGCCGAACAGGCGTTCCGCCGTGCCCACGAGCTGATGCCGCGCGA CGCCGCGATGCACAGCAACCTGCTGTTCTGCATGACCCATGATCCGCAGCTCGACAGCGAGACGATCTTCGCCGCGCACC GTCGCTTCGCCGACATTCACGAGGCGCCGGTACGCTCGCGCTGGCCGCGTCACCCCAACAAGCGCGATCCGGAGCGCAAG CTGCGCGTCGGCATCATCTCGGGTGACCTGTTCAATCACGCGGTGTCGTCATACGTCATGCCGATCCTGGAAGTGCTGCA CCGCGATCCGTCTCTGTCGCTGCACGTCTACCACAATCACACCACCGAGGACGGCGTCACCGAGCGCATGCGCGGCTGGA CCGACAGCTGGCTGCAGGTGGCGGGCCTGACCGACGACCGTCTGGTCGAGCGGATCCGCTCCGACCGTATCGACATCATG CTCGACCTGTCGAGCCACACCGGCCGCAACCGCCTGACCGCACTCGCGCGCAAGCCCGCGCCCGTGCAAATCACCTGGGT CGGCTATCCCGGCACGACCGGGCTCGACGCGATGGACTACTACTTCGCGGACCGCTACGGCGTGCCGTTCGGCGAGATGG AGCGCCAGTACACCGAAAAAATCATCCACCTGCCGGCGGGCGGTACCTTCAAGCCCGTCGACAACGCCCCACCCGTCAAC CTCCTGCCCGCGCTGCACAACGGCTTCGTGACGTTCGGCAGCTTTAACCGTCTGAACAAGCTGCGCCGCGAGGTGATCGC AGTGTGGGCGCGGATTCTGCACGCGGTGCCGAACTCGCGCATGCGGGTCGGCTCGGTTCCGCGCGTGGGCGGTGTGGACA TGCTGCTCGAATGGTTCACGGCCGAGGGCATCGCACACCAACGGCTCGACCTGCAGCCGCGCGCGCCGGCCGCCGTCTAC CTGCAGCAGCATCACCACGTCGATTTCTGCCTCGACACCTTCCCGTACACCGGCTCGACCACCGCGCTCAACGCGCTCTG GATGGGCGTGCCGACTCTGACGATCCGCGGCGGCACGCTGGCGAGCCGCGCAGGCGCGGTCTGGATGTCGTCGGTTGGAC TCGAGCAGTTCGTGGCGGACAGCCCCGACGATTTCGTCGCCCGCGGCATCGCGCTCGCCAATGACGTACAAGGACTCGCC GCGGTGCGACGCGGCCTACGCGATCGCTGCCGGCAGTCGCCGGGCTTCCAGCCCGAGCGCATCGCCAACGCGGTGTCCGA CGCGTTCCGGATGGCCTGGCGGCGCTGGTGTGCCGACGAGGCGCCGGCCCCGTTCACGGTGCCGGAGCGCGCCGCTACCG GCGCCAGCGCCGATTCCGCGGCCGCCGAGACCGCCCTCACCGGAGACGCATGA
Upstream 100 bases:
>100_bases CCATAAAACTGACGGCGGTTTACCAGTCAGTTCCGGGCTTCGGCAGGCCGCGCGCCGCCGGATAATTTCCATCATTCGCT ATCTCCGTTCGAATTCCGCC
Downstream 100 bases:
>100_bases TGAACGCCCTGCCGTTACGCGTAGTCGAGCCCCAGGCCGATGAACGCATCTATGTGACGCAGCCGCACCTGCCGCCGCTG GCCGAGTTCCTGCCGTATCT
Product: TPR domain-containing protein
Products: NA
Alternate protein names: O-Linked N-Acetylglucosamine Transferase; Tetratricopeptide TPR_2 Repeat Protein; TPR Domain-Containing Protein; Methyltransferase Type; SPINDLY Family O-Linked N-Acetylglucosamine Transferase; Tetratricopeptide TPR_1 Repeat-Containing Protein; TPR Repeat Protein; TPR Domain Protein; Glycosyl Transferase Family Protein; FkbM Family Methyltransferase; Tetratricopeptide Repeat-Containing Protein; SPY Protein; Glycosyltransferase TPR Domain Protein; Tpr Repeat-Containing Protein; Porphyrin Biosynthesis Protein; Transferase; Tetratricopeptide Repeat Family Protein; Sulfotransferase; TPR Domain/SEC-C Motif Domain Protein; TPR Repeat; O-Linked N-Acetylglucosamine TransferaNDLY Family; Tetratricopeptide Repeat Protein; O-Linked Acetylglucosamine Transferase; Glycosyltransferase TPR Domain-Containing Protein; Methyltransferase Regulatory Domain; Tetratricopeptide Domain Protein; TPR Repeat Domain-Containing Protein; TPR Repeat-Containing Glycosyl Transferase; O-Linked GLCNAC Transferase; Glycosyl Transferase TPR Repeat Protein; Glycosyl Transferase
Number of amino acids: Translated: 790; Mature: 789
Protein sequence:
>790_residues MSDPMPSTRSAPDDPQFDADIALVMQSAIACHHNGEFADAKAMYEVVIAARPNHADARYNLAVLNVQTGNPEAALPHFEV ALGVDPNNGQFWVAYINAQIEAGRAAAAWAMIGMCQQRGIRGPALDGLIQRLSISEEGRAATVGTAAAGHTVAATPAPAA DEAPVNADPRGGLARRPTQQDITRFTALYNKGRYADAVKHARTMTERYPGSAYAWKSLSNALHKHGEYLAAAEPLARATT LDPADVVLGTLYADVLRLANRLADSEREARRVIAVDDSHAEAWRVLNMTLLAQGRSTEAIAAGNRSVELAPDSLQMYGSL GVALSELGATLEAEQAFRRAHELMPRDAAMHSNLLFCMTHDPQLDSETIFAAHRRFADIHEAPVRSRWPRHPNKRDPERK LRVGIISGDLFNHAVSSYVMPILEVLHRDPSLSLHVYHNHTTEDGVTERMRGWTDSWLQVAGLTDDRLVERIRSDRIDIM LDLSSHTGRNRLTALARKPAPVQITWVGYPGTTGLDAMDYYFADRYGVPFGEMERQYTEKIIHLPAGGTFKPVDNAPPVN LLPALHNGFVTFGSFNRLNKLRREVIAVWARILHAVPNSRMRVGSVPRVGGVDMLLEWFTAEGIAHQRLDLQPRAPAAVY LQQHHHVDFCLDTFPYTGSTTALNALWMGVPTLTIRGGTLASRAGAVWMSSVGLEQFVADSPDDFVARGIALANDVQGLA AVRRGLRDRCRQSPGFQPERIANAVSDAFRMAWRRWCADEAPAPFTVPERAATGASADSAAAETALTGDA
Sequences:
>Translated_790_residues MSDPMPSTRSAPDDPQFDADIALVMQSAIACHHNGEFADAKAMYEVVIAARPNHADARYNLAVLNVQTGNPEAALPHFEV ALGVDPNNGQFWVAYINAQIEAGRAAAAWAMIGMCQQRGIRGPALDGLIQRLSISEEGRAATVGTAAAGHTVAATPAPAA DEAPVNADPRGGLARRPTQQDITRFTALYNKGRYADAVKHARTMTERYPGSAYAWKSLSNALHKHGEYLAAAEPLARATT LDPADVVLGTLYADVLRLANRLADSEREARRVIAVDDSHAEAWRVLNMTLLAQGRSTEAIAAGNRSVELAPDSLQMYGSL GVALSELGATLEAEQAFRRAHELMPRDAAMHSNLLFCMTHDPQLDSETIFAAHRRFADIHEAPVRSRWPRHPNKRDPERK LRVGIISGDLFNHAVSSYVMPILEVLHRDPSLSLHVYHNHTTEDGVTERMRGWTDSWLQVAGLTDDRLVERIRSDRIDIM LDLSSHTGRNRLTALARKPAPVQITWVGYPGTTGLDAMDYYFADRYGVPFGEMERQYTEKIIHLPAGGTFKPVDNAPPVN LLPALHNGFVTFGSFNRLNKLRREVIAVWARILHAVPNSRMRVGSVPRVGGVDMLLEWFTAEGIAHQRLDLQPRAPAAVY LQQHHHVDFCLDTFPYTGSTTALNALWMGVPTLTIRGGTLASRAGAVWMSSVGLEQFVADSPDDFVARGIALANDVQGLA AVRRGLRDRCRQSPGFQPERIANAVSDAFRMAWRRWCADEAPAPFTVPERAATGASADSAAAETALTGDA >Mature_789_residues SDPMPSTRSAPDDPQFDADIALVMQSAIACHHNGEFADAKAMYEVVIAARPNHADARYNLAVLNVQTGNPEAALPHFEVA LGVDPNNGQFWVAYINAQIEAGRAAAAWAMIGMCQQRGIRGPALDGLIQRLSISEEGRAATVGTAAAGHTVAATPAPAAD EAPVNADPRGGLARRPTQQDITRFTALYNKGRYADAVKHARTMTERYPGSAYAWKSLSNALHKHGEYLAAAEPLARATTL DPADVVLGTLYADVLRLANRLADSEREARRVIAVDDSHAEAWRVLNMTLLAQGRSTEAIAAGNRSVELAPDSLQMYGSLG VALSELGATLEAEQAFRRAHELMPRDAAMHSNLLFCMTHDPQLDSETIFAAHRRFADIHEAPVRSRWPRHPNKRDPERKL RVGIISGDLFNHAVSSYVMPILEVLHRDPSLSLHVYHNHTTEDGVTERMRGWTDSWLQVAGLTDDRLVERIRSDRIDIML DLSSHTGRNRLTALARKPAPVQITWVGYPGTTGLDAMDYYFADRYGVPFGEMERQYTEKIIHLPAGGTFKPVDNAPPVNL LPALHNGFVTFGSFNRLNKLRREVIAVWARILHAVPNSRMRVGSVPRVGGVDMLLEWFTAEGIAHQRLDLQPRAPAAVYL QQHHHVDFCLDTFPYTGSTTALNALWMGVPTLTIRGGTLASRAGAVWMSSVGLEQFVADSPDDFVARGIALANDVQGLAA VRRGLRDRCRQSPGFQPERIANAVSDAFRMAWRRWCADEAPAPFTVPERAATGASADSAAAETALTGDA
Specific function: Unknown
COG id: COG3914
COG function: function code O; Predicted O-linked N-acetylglucosamine transferase, SPINDLY family
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI32307150, Length=576, Percent_Identity=23.7847222222222, Blast_Score=110, Evalue=7e-24, Organism=Homo sapiens, GI32307148, Length=576, Percent_Identity=23.7847222222222, Blast_Score=109, Evalue=9e-24, Organism=Caenorhabditis elegans, GI115532690, Length=567, Percent_Identity=23.6331569664903, Blast_Score=110, Evalue=4e-24, Organism=Caenorhabditis elegans, GI115532692, Length=567, Percent_Identity=23.6331569664903, Blast_Score=109, Evalue=6e-24, Organism=Drosophila melanogaster, GI17647755, Length=559, Percent_Identity=23.2558139534884, Blast_Score=107, Evalue=3e-23, Organism=Drosophila melanogaster, GI24585827, Length=559, Percent_Identity=23.2558139534884, Blast_Score=107, Evalue=3e-23, Organism=Drosophila melanogaster, GI24585829, Length=559, Percent_Identity=23.2558139534884, Blast_Score=107, Evalue=3e-23,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 86343; Mature: 86212
Theoretical pI: Translated: 6.82; Mature: 6.82
Prosite motif: PS50005 TPR ; PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDPMPSTRSAPDDPQFDADIALVMQSAIACHHNGEFADAKAMYEVVIAARPNHADARYN CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHEEECCCCCCCEEE LAVLNVQTGNPEAALPHFEVALGVDPNNGQFWVAYINAQIEAGRAAAAWAMIGMCQQRGI EEEEEEECCCCCCCCCCEEEEEEECCCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHCCC RGPALDGLIQRLSISEEGRAATVGTAAAGHTVAATPAPAADEAPVNADPRGGLARRPTQQ CCCHHHHHHHHHCCCCCCCEEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHH DITRFTALYNKGRYADAVKHARTMTERYPGSAYAWKSLSNALHKHGEYLAAAEPLARATT HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHCHHHHHCC LDPADVVLGTLYADVLRLANRLADSEREARRVIAVDDSHAEAWRVLNMTLLAQGRSTEAI CCHHHHHHHHHHHHHHHHHHHHCCCHHHCCEEEEEECCCHHHHHHHHHHEEECCCCCCEE AAGNRSVELAPDSLQMYGSLGVALSELGATLEAEQAFRRAHELMPRDAAMHSNLLFCMTH ECCCCEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHCCEEEEEEC DPQLDSETIFAAHRRFADIHEAPVRSRWPRHPNKRDPERKLRVGIISGDLFNHAVSSYVM CCCCCCHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCHHEEEEEEECHHHHHHHHHHHH PILEVLHRDPSLSLHVYHNHTTEDGVTERMRGWTDSWLQVAGLTDDRLVERIRSDRIDIM HHHHHHCCCCCCEEEEEECCCCCCHHHHHHCCCCHHHHEECCCCHHHHHHHHHCCCEEEE LDLSSHTGRNRLTALARKPAPVQITWVGYPGTTGLDAMDYYFADRYGVPFGEMERQYTEK EEECCCCCCHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHH IIHLPAGGTFKPVDNAPPVNLLPALHNGFVTFGSFNRLNKLRREVIAVWARILHAVPNSR EEECCCCCCCCCCCCCCCCCHHHHHHCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCC MRVGSVPRVGGVDMLLEWFTAEGIAHQRLDLQPRAPAAVYLQQHHHVDFCLDTFPYTGST EEECCCCCCCCHHHHHHHHHHCCCHHHHCCCCCCCCHHHHHHHCCCEEEEECCCCCCCCH TALNALWMGVPTLTIRGGTLASRAGAVWMSSVGLEQFVADSPDDFVARGIALANDVQGLA HHHHHHHHCCCEEEEECCCHHHHCCHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHH AVRRGLRDRCRQSPGFQPERIANAVSDAFRMAWRRWCADEAPAPFTVPERAATGASADSA HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCCCCHH AAETALTGDA HHHHHCCCCC >Mature Secondary Structure SDPMPSTRSAPDDPQFDADIALVMQSAIACHHNGEFADAKAMYEVVIAARPNHADARYN CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHEEECCCCCCCEEE LAVLNVQTGNPEAALPHFEVALGVDPNNGQFWVAYINAQIEAGRAAAAWAMIGMCQQRGI EEEEEEECCCCCCCCCCEEEEEEECCCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHCCC RGPALDGLIQRLSISEEGRAATVGTAAAGHTVAATPAPAADEAPVNADPRGGLARRPTQQ CCCHHHHHHHHHCCCCCCCEEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHH DITRFTALYNKGRYADAVKHARTMTERYPGSAYAWKSLSNALHKHGEYLAAAEPLARATT HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHCHHHHHCC LDPADVVLGTLYADVLRLANRLADSEREARRVIAVDDSHAEAWRVLNMTLLAQGRSTEAI CCHHHHHHHHHHHHHHHHHHHHCCCHHHCCEEEEEECCCHHHHHHHHHHEEECCCCCCEE AAGNRSVELAPDSLQMYGSLGVALSELGATLEAEQAFRRAHELMPRDAAMHSNLLFCMTH ECCCCEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHCCEEEEEEC DPQLDSETIFAAHRRFADIHEAPVRSRWPRHPNKRDPERKLRVGIISGDLFNHAVSSYVM CCCCCCHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCHHEEEEEEECHHHHHHHHHHHH PILEVLHRDPSLSLHVYHNHTTEDGVTERMRGWTDSWLQVAGLTDDRLVERIRSDRIDIM HHHHHHCCCCCCEEEEEECCCCCCHHHHHHCCCCHHHHEECCCCHHHHHHHHHCCCEEEE LDLSSHTGRNRLTALARKPAPVQITWVGYPGTTGLDAMDYYFADRYGVPFGEMERQYTEK EEECCCCCCHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHH IIHLPAGGTFKPVDNAPPVNLLPALHNGFVTFGSFNRLNKLRREVIAVWARILHAVPNSR EEECCCCCCCCCCCCCCCCCHHHHHHCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCC MRVGSVPRVGGVDMLLEWFTAEGIAHQRLDLQPRAPAAVYLQQHHHVDFCLDTFPYTGST EEECCCCCCCCHHHHHHHHHHCCCHHHHCCCCCCCCHHHHHHHCCCEEEEECCCCCCCCH TALNALWMGVPTLTIRGGTLASRAGAVWMSSVGLEQFVADSPDDFVARGIALANDVQGLA HHHHHHHHCCCEEEEECCCHHHHCCHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHH AVRRGLRDRCRQSPGFQPERIANAVSDAFRMAWRRWCADEAPAPFTVPERAATGASADSA HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCCCCHH AAETALTGDA HHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA