| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is stfR [C]
Identifier: 238025805
GI number: 238025805
Start: 138948
End: 141545
Strand: Reverse
Name: stfR [C]
Synonym: bglu_1g01300
Alternate gene names: 238025805
Gene position: 141545-138948 (Counterclockwise)
Preceding gene: 339905955
Following gene: 238025804
Centisome position: 3.62
GC content: 65.24
Gene sequence:
>2598_bases ATGGCAGGAAATCTCATCCAGATTACGGATGCCGGCAGGGCGGCGCTCGTCGCCCCCGGCAATACCGGCACGGCGGCGCA CCGCGTCGTGAGCATCGGGTTGGCGACGGCCTCCTTCGCGTTCGACCGCGCAATGCTGGCGATGCCCAACGAGCGCAAAC GCATCATCACGTTCGGCGGCGAGAACGTCGCGGCGGACACTATCCACGTTGTGCTCCAGGACGACACGGACGACCAGTAC GCGCTCTACGGATTTGGGCTCTATCTCGACAGCGGCGTGCTGTTCGGCGCCTACGTCCAGGACGCGCCGATCATGGAGAA ATCGCCGGCCGCCATCCTGTTGCTCGCGGCCGATGCCGTGTTTTCCACCATCGACGCAGCCCAGCTCGAGTTCGGGCCGA CCACCTTTCTTAATCCGCCTGCTACGACCGAGCGCCAGGGCGTGGTGGAGCTGGCAACCGTCGACGAAGTGGCCGCCGGC GCCGACGCCACGCGCGCCGTAACGCCTCTTGGCGCGGCCAAGCGATATATGCCGATATCCGGCGGCATCTTTAGCGGCCC CATTGCCGTACAGGCTTCCGTCGATACGAACAACGCGCAGGTTGTCGTGTCGCCGGCCGTTGGCAAGCTGGGCGCCGAAT CGAAGGTTCGCTTCTCTGCTGCCTTTGGCGATCCGAAGTCCAACGACACCTCGCCTCGCGTCGTCGCGTCCGTGCGCGCC GGATTCAATGGTGGTGTCTGGGGAAGCGAGTACCTCGACTTCCACCTCAACCGCGTCCCGAACGATGCAAGGGATGACGC GAACATGGACCGCGCTTTGCGCCTCGCCGCTGGCGGCCGCGCCGTGATCGGCGCCACGCAGGACGACGGCGGCACCGCCC TACAGGTCGGCGGCAGCGTTCGCGCGAACAACTATGGCATCGGCGACCAAAGCAGCAAGGCGTCCGGCCTGGTCGGAATC AGCAACGGGACGAACGGCCCGAACGTCGGGTTCTATGGCCGCGAGTCGGTCGGTGGCGGCGCCATCACGTTGAGCACCGG AGGTAAGGAAAGGCTTCGCCTGAAGGGCGACGGCAAGCTGCTGATCGGGACCGATACCCCTGACGCGTCGGCGGCCGTGC TGCAAGTCGCCGGCGCAGCGTCCGTCACCGGCTCGATCATCGCGAACGGCACCAGTGCGTTCGCGCGTGGCGTGCAATCA ACTGGACTCGACGACGGCGGCGGAAGCTTCCGCGCGACCAACGGCGGCTATGGTGCGTTCCTGCGCAACGACGGGTCGCA CATGTACCTGCTATCGACCAAGAAGGGCGACCCGCTCGGCAGCTTCAACGATTACCGCCCCTTCGCGTGGGATCTCGATT CTGGCTACGTCACGATCGATTACAACGGGCACGGCGCTTCTGTGGGCGGCGCCCTGAGCATCGCGATCTCGGCGAGCATC GGCCGTGGACGTGACCAAGGCGTCATTTGGCTTGGTCCGCGCAACGACGGTTATCTGTATTCGACTGCCGACTCTTGCGG CTGGTGGTACGGGGCGGCCGGTTCGGTTCAATATGTTTTCGGCGATCACTCCCTGCGCGTCGACAACCAGCCGGTGTGGC ATGCCGGCAACCTCACTCCCCTCGACCGAAACGCAGGGGGCTGGATGGCCAGCGACGTGCATTTTGCTCCCGGCGCACGA CTGGTACTCAGCGAAGGTAGCCCCGGTGCGCCCTCGCTCACGTTCGAGAATGACGGCGCGCCCGACACCGGCCTGTATCA CGTTGCAGATGGTCAATTTGGTGTCACCTGCAACAGCCAGCCGATCGTCGGATTCGCACCTGACGGCACCCGGTTCACGA GCAACGTATTCGGGCCAACGCCGGCCGCCGGCGACCGCTCGACGCGATTTGCCACCACCGAATGGGTGCTGTCCGCGCTG TCGTCGTCGTCGATCGGCCAAATCGTGTTCGAGCCGCGCACCACGACGCGGGCCGGGTTTCTCAAGGCGAACGGTTCGCT ACTTGAGCGGGCCGACTATCCGGCGCTATGGGCCTACGCTCAAGCGAGCGGCGCCCTGATTTCGGATGCCGCATGGTGGG CCGGGCAATCGGGTTGCTTTTCTACTGGCACCACGGGCACGAATTTCCGCATCCCTGAGCTGCGCGGCGAATTTCTCCGT TGCCTCGACGACGGGCGCGGCCTGGATACCAGCCGCGCGGCCGGGTCGCTGCAACTCAGCCAGAACGCCAAACACTCGCA CGATGCGTCGTCTACCGTAGGTGGATCACATACCCACGGGGCGTTTACTACAGGCGCTGGTTCGCACAACCACGCTATCG ACCAGCAGCCTCATGCACACGACACCTGGCTTGGTTCCGTGCAGGTTTCCGGTGTCGATCGTGGTGGCGGTTTCGGTCCC TACAACGGTCGCGTGGGGGAAGCTTGGAGCGATCCGGCGAACGCCAACATCGCGATCCTTCCCACCGGCGACCACGTCCA CGGTGCCGGCACCTATCCAGCCGGCGACCACAACCACGCCATCGCGGTGCAGCCCAGCGGCGGCGATGAAGCGCGCCCGC GAAACATAGCGCTGCTCGCCATGATCCGCGCTTACTAA
Upstream 100 bases:
>100_bases CACGCTCACGCAAGGATTCAGGCGCGAGCGCCCGGCAACGCATTGGCGCCGGCGCGCGCGCCGCGCTCTATCGCCGCCTG AACCTCACGGATAAATGACC
Downstream 100 bases:
>100_bases CCCTTGTTCCATTACGCCATGCTCGTTCACCACTACAACCCGACCACCGGCGAATACCTGTCCAGCGGCCAGCCGGACGC CGACCCGCTCAACAACGATC
Product: phage-related tail fiber protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 865; Mature: 864
Protein sequence:
>865_residues MAGNLIQITDAGRAALVAPGNTGTAAHRVVSIGLATASFAFDRAMLAMPNERKRIITFGGENVAADTIHVVLQDDTDDQY ALYGFGLYLDSGVLFGAYVQDAPIMEKSPAAILLLAADAVFSTIDAAQLEFGPTTFLNPPATTERQGVVELATVDEVAAG ADATRAVTPLGAAKRYMPISGGIFSGPIAVQASVDTNNAQVVVSPAVGKLGAESKVRFSAAFGDPKSNDTSPRVVASVRA GFNGGVWGSEYLDFHLNRVPNDARDDANMDRALRLAAGGRAVIGATQDDGGTALQVGGSVRANNYGIGDQSSKASGLVGI SNGTNGPNVGFYGRESVGGGAITLSTGGKERLRLKGDGKLLIGTDTPDASAAVLQVAGAASVTGSIIANGTSAFARGVQS TGLDDGGGSFRATNGGYGAFLRNDGSHMYLLSTKKGDPLGSFNDYRPFAWDLDSGYVTIDYNGHGASVGGALSIAISASI GRGRDQGVIWLGPRNDGYLYSTADSCGWWYGAAGSVQYVFGDHSLRVDNQPVWHAGNLTPLDRNAGGWMASDVHFAPGAR LVLSEGSPGAPSLTFENDGAPDTGLYHVADGQFGVTCNSQPIVGFAPDGTRFTSNVFGPTPAAGDRSTRFATTEWVLSAL SSSSIGQIVFEPRTTTRAGFLKANGSLLERADYPALWAYAQASGALISDAAWWAGQSGCFSTGTTGTNFRIPELRGEFLR CLDDGRGLDTSRAAGSLQLSQNAKHSHDASSTVGGSHTHGAFTTGAGSHNHAIDQQPHAHDTWLGSVQVSGVDRGGGFGP YNGRVGEAWSDPANANIAILPTGDHVHGAGTYPAGDHNHAIAVQPSGGDEARPRNIALLAMIRAY
Sequences:
>Translated_865_residues MAGNLIQITDAGRAALVAPGNTGTAAHRVVSIGLATASFAFDRAMLAMPNERKRIITFGGENVAADTIHVVLQDDTDDQY ALYGFGLYLDSGVLFGAYVQDAPIMEKSPAAILLLAADAVFSTIDAAQLEFGPTTFLNPPATTERQGVVELATVDEVAAG ADATRAVTPLGAAKRYMPISGGIFSGPIAVQASVDTNNAQVVVSPAVGKLGAESKVRFSAAFGDPKSNDTSPRVVASVRA GFNGGVWGSEYLDFHLNRVPNDARDDANMDRALRLAAGGRAVIGATQDDGGTALQVGGSVRANNYGIGDQSSKASGLVGI SNGTNGPNVGFYGRESVGGGAITLSTGGKERLRLKGDGKLLIGTDTPDASAAVLQVAGAASVTGSIIANGTSAFARGVQS TGLDDGGGSFRATNGGYGAFLRNDGSHMYLLSTKKGDPLGSFNDYRPFAWDLDSGYVTIDYNGHGASVGGALSIAISASI GRGRDQGVIWLGPRNDGYLYSTADSCGWWYGAAGSVQYVFGDHSLRVDNQPVWHAGNLTPLDRNAGGWMASDVHFAPGAR LVLSEGSPGAPSLTFENDGAPDTGLYHVADGQFGVTCNSQPIVGFAPDGTRFTSNVFGPTPAAGDRSTRFATTEWVLSAL SSSSIGQIVFEPRTTTRAGFLKANGSLLERADYPALWAYAQASGALISDAAWWAGQSGCFSTGTTGTNFRIPELRGEFLR CLDDGRGLDTSRAAGSLQLSQNAKHSHDASSTVGGSHTHGAFTTGAGSHNHAIDQQPHAHDTWLGSVQVSGVDRGGGFGP YNGRVGEAWSDPANANIAILPTGDHVHGAGTYPAGDHNHAIAVQPSGGDEARPRNIALLAMIRAY >Mature_864_residues AGNLIQITDAGRAALVAPGNTGTAAHRVVSIGLATASFAFDRAMLAMPNERKRIITFGGENVAADTIHVVLQDDTDDQYA LYGFGLYLDSGVLFGAYVQDAPIMEKSPAAILLLAADAVFSTIDAAQLEFGPTTFLNPPATTERQGVVELATVDEVAAGA DATRAVTPLGAAKRYMPISGGIFSGPIAVQASVDTNNAQVVVSPAVGKLGAESKVRFSAAFGDPKSNDTSPRVVASVRAG FNGGVWGSEYLDFHLNRVPNDARDDANMDRALRLAAGGRAVIGATQDDGGTALQVGGSVRANNYGIGDQSSKASGLVGIS NGTNGPNVGFYGRESVGGGAITLSTGGKERLRLKGDGKLLIGTDTPDASAAVLQVAGAASVTGSIIANGTSAFARGVQST GLDDGGGSFRATNGGYGAFLRNDGSHMYLLSTKKGDPLGSFNDYRPFAWDLDSGYVTIDYNGHGASVGGALSIAISASIG RGRDQGVIWLGPRNDGYLYSTADSCGWWYGAAGSVQYVFGDHSLRVDNQPVWHAGNLTPLDRNAGGWMASDVHFAPGARL VLSEGSPGAPSLTFENDGAPDTGLYHVADGQFGVTCNSQPIVGFAPDGTRFTSNVFGPTPAAGDRSTRFATTEWVLSALS SSSIGQIVFEPRTTTRAGFLKANGSLLERADYPALWAYAQASGALISDAAWWAGQSGCFSTGTTGTNFRIPELRGEFLRC LDDGRGLDTSRAAGSLQLSQNAKHSHDASSTVGGSHTHGAFTTGAGSHNHAIDQQPHAHDTWLGSVQVSGVDRGGGFGPY NGRVGEAWSDPANANIAILPTGDHVHGAGTYPAGDHNHAIAVQPSGGDEARPRNIALLAMIRAY
Specific function: Unknown
COG id: COG5301
COG function: function code R; Phage-related tail fibre protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 89264; Mature: 89133
Theoretical pI: Translated: 5.65; Mature: 5.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAGNLIQITDAGRAALVAPGNTGTAAHRVVSIGLATASFAFDRAMLAMPNERKRIITFGG CCCCEEEEECCCCEEEEECCCCCHHHEEEEEEEEHHHHHHHHHHEECCCCCCCEEEEECC ENVAADTIHVVLQDDTDDQYALYGFGLYLDSGVLFGAYVQDAPIMEKSPAAILLLAADAV CCEECEEEEEEEECCCCCCEEEEEEEEEECCCEEEEEEECCCCCCCCCCCEEEEEECCHH FSTIDAAQLEFGPTTFLNPPATTERQGVVELATVDEVAAGADATRAVTPLGAAKRYMPIS HHHHCHHEEECCCCEECCCCCCCCCCCCEEEEEHHHHHCCCCCCCEECCCCCCCEEEECC GGIFSGPIAVQASVDTNNAQVVVSPAVGKLGAESKVRFSAAFGDPKSNDTSPRVVASVRA CCEECCCEEEEEEECCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEEC GFNGGVWGSEYLDFHLNRVPNDARDDANMDRALRLAAGGRAVIGATQDDGGTALQVGGSV CCCCCCCCCHHHEEEHHCCCCCCCCCCCCCCEEEEECCCEEEEEECCCCCCCEEEECCEE RANNYGIGDQSSKASGLVGISNGTNGPNVGFYGRESVGGGAITLSTGGKERLRLKGDGKL EECCCCCCCCCCCCCCEEEECCCCCCCCCCEEECCCCCCCEEEEECCCCEEEEEECCCEE LIGTDTPDASAAVLQVAGAASVTGSIIANGTSAFARGVQSTGLDDGGGSFRATNGGYGAF EEECCCCCCCEEEEEECCCCCCCCEEEECCHHHHHHCHHHCCCCCCCCEEEECCCCEEEE LRNDGSHMYLLSTKKGDPLGSFNDYRPFAWDLDSGYVTIDYNGHGASVGGALSIAISASI EECCCCEEEEEECCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCEEEEEEEEEC GRGRDQGVIWLGPRNDGYLYSTADSCGWWYGAAGSVQYVFGDHSLRVDNQPVWHAGNLTP CCCCCCCEEEECCCCCCEEEECCCCCCEEECCCCEEEEEECCCEEEECCCCEEECCCCCC LDRNAGGWMASDVHFAPGARLVLSEGSPGAPSLTFENDGAPDTGLYHVADGQFGVTCNSQ CCCCCCCEEECCEEECCCCEEEEECCCCCCCEEEECCCCCCCCCEEEEECCEEEEEECCC PIVGFAPDGTRFTSNVFGPTPAAGDRSTRFATTEWVLSALSSSSIGQIVFEPRTTTRAGF CEEEECCCCCEEECCCCCCCCCCCCCCCEEEHHHHHHHHHCCCCCCEEEECCCCCCCEEE LKANGSLLERADYPALWAYAQASGALISDAAWWAGQSGCFSTGTTGTNFRIPELRGEFLR EEECCCHHHCCCCCEEEEEECCCCCEEECCHHHCCCCCCEECCCCCCCEECHHHHHHHHH CLDDGRGLDTSRAAGSLQLSQNAKHSHDASSTVGGSHTHGAFTTGAGSHNHAIDQQPHAH HHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC DTWLGSVQVSGVDRGGGFGPYNGRVGEAWSDPANANIAILPTGDHVHGAGTYPAGDHNHA CCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCE IAVQPSGGDEARPRNIALLAMIRAY EEEECCCCCCCCCCCEEEEEEEECC >Mature Secondary Structure AGNLIQITDAGRAALVAPGNTGTAAHRVVSIGLATASFAFDRAMLAMPNERKRIITFGG CCCEEEEECCCCEEEEECCCCCHHHEEEEEEEEHHHHHHHHHHEECCCCCCCEEEEECC ENVAADTIHVVLQDDTDDQYALYGFGLYLDSGVLFGAYVQDAPIMEKSPAAILLLAADAV CCEECEEEEEEEECCCCCCEEEEEEEEEECCCEEEEEEECCCCCCCCCCCEEEEEECCHH FSTIDAAQLEFGPTTFLNPPATTERQGVVELATVDEVAAGADATRAVTPLGAAKRYMPIS HHHHCHHEEECCCCEECCCCCCCCCCCCEEEEEHHHHHCCCCCCCEECCCCCCCEEEECC GGIFSGPIAVQASVDTNNAQVVVSPAVGKLGAESKVRFSAAFGDPKSNDTSPRVVASVRA CCEECCCEEEEEEECCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEEC GFNGGVWGSEYLDFHLNRVPNDARDDANMDRALRLAAGGRAVIGATQDDGGTALQVGGSV CCCCCCCCCHHHEEEHHCCCCCCCCCCCCCCEEEEECCCEEEEEECCCCCCCEEEECCEE RANNYGIGDQSSKASGLVGISNGTNGPNVGFYGRESVGGGAITLSTGGKERLRLKGDGKL EECCCCCCCCCCCCCCEEEECCCCCCCCCCEEECCCCCCCEEEEECCCCEEEEEECCCEE LIGTDTPDASAAVLQVAGAASVTGSIIANGTSAFARGVQSTGLDDGGGSFRATNGGYGAF EEECCCCCCCEEEEEECCCCCCCCEEEECCHHHHHHCHHHCCCCCCCCEEEECCCCEEEE LRNDGSHMYLLSTKKGDPLGSFNDYRPFAWDLDSGYVTIDYNGHGASVGGALSIAISASI EECCCCEEEEEECCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCEEEEEEEEEC GRGRDQGVIWLGPRNDGYLYSTADSCGWWYGAAGSVQYVFGDHSLRVDNQPVWHAGNLTP CCCCCCCEEEECCCCCCEEEECCCCCCEEECCCCEEEEEECCCEEEECCCCEEECCCCCC LDRNAGGWMASDVHFAPGARLVLSEGSPGAPSLTFENDGAPDTGLYHVADGQFGVTCNSQ CCCCCCCEEECCEEECCCCEEEEECCCCCCCEEEECCCCCCCCCEEEEECCEEEEEECCC PIVGFAPDGTRFTSNVFGPTPAAGDRSTRFATTEWVLSALSSSSIGQIVFEPRTTTRAGF CEEEECCCCCEEECCCCCCCCCCCCCCCEEEHHHHHHHHHCCCCCCEEEECCCCCCCEEE LKANGSLLERADYPALWAYAQASGALISDAAWWAGQSGCFSTGTTGTNFRIPELRGEFLR EEECCCHHHCCCCCEEEEEECCCCCEEECCHHHCCCCCCEECCCCCCCEECHHHHHHHHH CLDDGRGLDTSRAAGSLQLSQNAKHSHDASSTVGGSHTHGAFTTGAGSHNHAIDQQPHAH HHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC DTWLGSVQVSGVDRGGGFGPYNGRVGEAWSDPANANIAILPTGDHVHGAGTYPAGDHNHA CCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCE IAVQPSGGDEARPRNIALLAMIRAY EEEECCCCCCCCCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA