| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is 238025803
Identifier: 238025803
GI number: 238025803
Start: 137083
End: 138255
Strand: Reverse
Name: 238025803
Synonym: bglu_1g01280
Alternate gene names: NA
Gene position: 138255-137083 (Counterclockwise)
Preceding gene: 238025804
Following gene: 238025802
Centisome position: 3.54
GC content: 63.94
Gene sequence:
>1173_bases ATGCCCCAGGACTACCACCACGGCGTTCGCGTCATCGAAGTTACCAACGGCGGGCCGCCGATCCGAACCGTGTCCACCGC CGTGCTCGGCATTGTCTGCACCGCGTCGGACGCGAGCGATACCGCGTTCCCGCTCAACACGCCGGTGCTGATCACCAACG TGATTTCCGCGCTCGGCCAGGCAGGCACGAAAGGCACGCTGCGCAAGACGCTCGACGCCATCGGCAAGCAGACGAAGCCG GTTACGGTCGTCGTGCGCGTGCCCGATGGCAAGGATGAAGCCGAAACCACCTCGAACGTGATCGGCACCGTCACGGCAGA CGGCAAATACACGGGCGCCAAGGCCCTGCTGACCGCCCAGGCAAAGCTGGGCGTGAAGCCGCGCATCCTGGTCGCGCCTG GCCTCGATACGGCCGCCGTAGCCGCTGCTCTCGCGCCGATCGCGCAATCGCTGCGTGCGTTCGCCTACGTGTCGGCGAAC GGCTGCAAGACCAAGGAGGAAGCCACGGCCTACCGTAAGCAGTTCGGTCAACGCGAAATCATGGTGATCTGGCCGGATTT CATCGGCTGGGATGACACGACGAACGCCACCGCGATCATTCCGGCGCCGGCGATTGCGGCCGGCCTGCGCGCCAAGATCG ACAACGACATCGGGTGGCACAAGACGATTTCGAACGTCGTCATCAACGGGGTGACCGGCATTTCGGCCGACGTGTCGTGG GATCTGCAAGACCCGGCGACGGACGCCGGCTACCTCAACGAACACGAGGTGACAACGCTGGTCAACTACAACGGGTTCCG CTTCTGGGGGTCGCGCACCTGCGCGGCTGATTCGAAGTTCGTGTTCGAGAACTACACGCGCAGCGCGCAGGTCATCGCCG ATTCGATCGCCGAGGCGCAAATGGGGAACGTCGACGGTGCCCTCAACCCTTCGCTCGCGCGCGACATCATCGAGAACATC AACAGCTGGTTCCGCCGCCAGGTTTCGAACGGCTACCTGATCGGCGGCCATTCCTGGTACGACCCGGAGCCGAACACCAA TGACGTTCTGTCGGCCGGTCAGATGTACCTCGACTACGACTACACGCCGGTGCCGCCGCTCGAAAACCTGATGCTGCGCC AGTACATCACCGACCGCTACCTCGCGACGTTCGCCGATCGCGTGACTGCATAA
Upstream 100 bases:
>100_bases CCGTGGCCGAAGTGGCGCCGCAAGACGTGACACCGCCCGAGGCACCGACCAAGAGCGCGTAACCCACCACCGCAACACCA CCCACAACGGAGCTACCACC
Downstream 100 bases:
>100_bases CTAGGAGGACAAGACGATGGGCATGCCCCGCAAACTGAAAAACTTCATGCTGTTCTACAACGGCAACCGATTCGCCGGCG ACGTCGATGAAATCGAGCTG
Product: bacteriophage major tail sheath protein
Products: NA
Alternate protein names: Phage Tail Sheath Protein; Bacteriophage Tail Sheath Protein; Phage Tail Sheath Protein; Phage Tail Sheath Protein FI; Tail Sheath Protein FI; Phage-Related Tail Sheath Protein; Phage-Related Tail Protein; Phage TAIL SHEATH PROTEIN; Phage Tail Sheath-Like Protein; Prophage; Prophage Tail Sheath; Phage P2 Tail Sheath FI-Like Protein; Tail Sheath Protein Bacteriophage; Bacteriophage Tail Sheath Protein; Bacteriophage P2 Tail Sheath Protein GPFI; Pyocin R2_PP Tail Sheath Protein GpFI; Pyocin R2_PP Tail Sheath Protein; Bacteriophage Tail Sheath Protein FI; Phage-Related Tail Sheath Protein; Bacteriophage Contractile Tail Sheath Protein; Bacteriophage P2 Tail Sheath Protein
Number of amino acids: Translated: 390; Mature: 389
Protein sequence:
>390_residues MPQDYHHGVRVIEVTNGGPPIRTVSTAVLGIVCTASDASDTAFPLNTPVLITNVISALGQAGTKGTLRKTLDAIGKQTKP VTVVVRVPDGKDEAETTSNVIGTVTADGKYTGAKALLTAQAKLGVKPRILVAPGLDTAAVAAALAPIAQSLRAFAYVSAN GCKTKEEATAYRKQFGQREIMVIWPDFIGWDDTTNATAIIPAPAIAAGLRAKIDNDIGWHKTISNVVINGVTGISADVSW DLQDPATDAGYLNEHEVTTLVNYNGFRFWGSRTCAADSKFVFENYTRSAQVIADSIAEAQMGNVDGALNPSLARDIIENI NSWFRRQVSNGYLIGGHSWYDPEPNTNDVLSAGQMYLDYDYTPVPPLENLMLRQYITDRYLATFADRVTA
Sequences:
>Translated_390_residues MPQDYHHGVRVIEVTNGGPPIRTVSTAVLGIVCTASDASDTAFPLNTPVLITNVISALGQAGTKGTLRKTLDAIGKQTKP VTVVVRVPDGKDEAETTSNVIGTVTADGKYTGAKALLTAQAKLGVKPRILVAPGLDTAAVAAALAPIAQSLRAFAYVSAN GCKTKEEATAYRKQFGQREIMVIWPDFIGWDDTTNATAIIPAPAIAAGLRAKIDNDIGWHKTISNVVINGVTGISADVSW DLQDPATDAGYLNEHEVTTLVNYNGFRFWGSRTCAADSKFVFENYTRSAQVIADSIAEAQMGNVDGALNPSLARDIIENI NSWFRRQVSNGYLIGGHSWYDPEPNTNDVLSAGQMYLDYDYTPVPPLENLMLRQYITDRYLATFADRVTA >Mature_389_residues PQDYHHGVRVIEVTNGGPPIRTVSTAVLGIVCTASDASDTAFPLNTPVLITNVISALGQAGTKGTLRKTLDAIGKQTKPV TVVVRVPDGKDEAETTSNVIGTVTADGKYTGAKALLTAQAKLGVKPRILVAPGLDTAAVAAALAPIAQSLRAFAYVSANG CKTKEEATAYRKQFGQREIMVIWPDFIGWDDTTNATAIIPAPAIAAGLRAKIDNDIGWHKTISNVVINGVTGISADVSWD LQDPATDAGYLNEHEVTTLVNYNGFRFWGSRTCAADSKFVFENYTRSAQVIADSIAEAQMGNVDGALNPSLARDIIENIN SWFRRQVSNGYLIGGHSWYDPEPNTNDVLSAGQMYLDYDYTPVPPLENLMLRQYITDRYLATFADRVTA
Specific function: Unknown
COG id: COG3497
COG function: function code R; Phage tail sheath protein FI
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41940; Mature: 41808
Theoretical pI: Translated: 5.21; Mature: 5.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPQDYHHGVRVIEVTNGGPPIRTVSTAVLGIVCTASDASDTAFPLNTPVLITNVISALGQ CCCCCCCCEEEEEECCCCCCHHHHHHHHEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHC AGTKGTLRKTLDAIGKQTKPVTVVVRVPDGKDEAETTSNVIGTVTADGKYTGAKALLTAQ CCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHCCEEEEEECCCCCCCCHHEEEEH AKLGVKPRILVAPGLDTAAVAAALAPIAQSLRAFAYVSANGCKTKEEATAYRKQFGQREI HHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHHHCCCCEE MVIWPDFIGWDDTTNATAIIPAPAIAAGLRAKIDNDIGWHKTISNVVINGVTGISADVSW EEECCCCCCCCCCCCCEEEECCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCEEE DLQDPATDAGYLNEHEVTTLVNYNGFRFWGSRTCAADSKFVFENYTRSAQVIADSIAEAQ CCCCCCCCCCCCCCCCEEEEEECCCEEEECCCCCCCCCCHHHHHHCHHHHHHHHHHHHHH MGNVDGALNPSLARDIIENINSWFRRQVSNGYLIGGHSWYDPEPNTNDVLSAGQMYLDYD CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCHHHHCCCCEEEECC YTPVPPLENLMLRQYITDRYLATFADRVTA CCCCCCHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure PQDYHHGVRVIEVTNGGPPIRTVSTAVLGIVCTASDASDTAFPLNTPVLITNVISALGQ CCCCCCCEEEEEECCCCCCHHHHHHHHEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHC AGTKGTLRKTLDAIGKQTKPVTVVVRVPDGKDEAETTSNVIGTVTADGKYTGAKALLTAQ CCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHCCEEEEEECCCCCCCCHHEEEEH AKLGVKPRILVAPGLDTAAVAAALAPIAQSLRAFAYVSANGCKTKEEATAYRKQFGQREI HHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHHHCCCCEE MVIWPDFIGWDDTTNATAIIPAPAIAAGLRAKIDNDIGWHKTISNVVINGVTGISADVSW EEECCCCCCCCCCCCCEEEECCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCEEE DLQDPATDAGYLNEHEVTTLVNYNGFRFWGSRTCAADSKFVFENYTRSAQVIADSIAEAQ CCCCCCCCCCCCCCCCEEEEEECCCEEEECCCCCCCCCCHHHHHHCHHHHHHHHHHHHHH MGNVDGALNPSLARDIIENINSWFRRQVSNGYLIGGHSWYDPEPNTNDVLSAGQMYLDYD CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCHHHHCCCCEEEECC YTPVPPLENLMLRQYITDRYLATFADRVTA CCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA