| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is 238025797
Identifier: 238025797
GI number: 238025797
Start: 131255
End: 132337
Strand: Reverse
Name: 238025797
Synonym: bglu_1g01220
Alternate gene names: NA
Gene position: 132337-131255 (Counterclockwise)
Preceding gene: 238025798
Following gene: 238025795
Centisome position: 3.39
GC content: 63.99
Gene sequence:
>1083_bases ATGCCGGCGAATTCCAACAGCCGCACCCCTGATGAACGCCGGCGCATGGCGCGTGTCGAGCGCGAACCCGATTACCGGAT CACGATCGCCGGCCGCGATATCTCCAAGCGCTTCGCGCCCCGGCTCCAGTCGCTCACGGTTACCGAATCACGCTCGGAGG AGGCCGATACCGTCGACATCGTTCTGGACGATGCCCGCGGCGACATTGCGCTGCCCAAGCGCGGCCAGGAAATCAAGGTG TCGATCGGCTGGGCCGGATCGACGCTGATCGACAAAGGCACCTTCATCATCAACGAATTCGAGTACGCCGGCGCGCCGGA CACGATCACCGTGCGTGCGCGCTCGGCGGCCATGCGCGACGGCATGCAGGAACGTCGGGAAAAGAGCTGGCACAAGCAGA CGATCGGCGCGATCGTCAAGAGCATCGCGGCGCGTTACTCGCTGGCGCCGGCGATCGGCGACACGCTCGCGAAGATCGCA ATTGCGCACATCGACCAGACGCAGGAGTCGGACATGTCGTTCCTGACGCGCCTCGCGAAACGGTACGACGCAGTGATGAA CGTGAAGGACAAGCGGCTGCTGTTCATGCCGATCGGGACAGGCAAGACCGCGAGCGGGAAGCCGCTCGACGAGCTGGCGA TCGTGCGAAAGGACGGAGACAGCCACCGCTACCATGTGTCGGAGCGCGAGAACTACAACGCCGTGCGCGCGCACTATCAC AGCAACGGCCACGGCCGGCGAAAGTCGGTCATCGTGGGCGGCGAGAACAATCACAACGTGAAAGTGCTGCCGGAAGACTA TGCGACGAAAGAAGAAGCGATGGCGGCCGCGCAGGCGGAATACAACCGCACGCAGCGCAGCCAGCAGACCCTTAGCTATT CGCTCGCTTGGGGCCGGCCGGAAGTGTTCCCTGAAATGCCCGTGACTGTCGCCGGACTGAAGCCGGAAATCGACGAGGCG GCCTGGATCGTCAAGCGGGCTACCCACACCCTGGACGATAGCGGCCTGGTCACGGACCTGGATCTAGAAATGCGCGACGA CCCAACCACCGACCGGCACCGCAGCCACTTAGGGAAGCGCTGA
Upstream 100 bases:
>100_bases CGCTCACCATCGAGCGCGTCGACGATGAGGTGCTACGGCAAACGCCGGACGCGCCGTATGACGATCCCGACAACGACGAT ACCGACGACCAGGAGGCGTG
Downstream 100 bases:
>100_bases CCAGATGCGCAGCCGGCGGCACCCTTCAGCTCCGGCGGGCCGGCGCCTCGGCCACCTGGTCGCCCAGCTCGAGTACGTTT CGCACGCGCCGCAAATCCGC
Product: Fels-2 prophage protein
Products: NA
Alternate protein names: Phage Late Control D Family Protein; Phage Late Control D; Bacteriophage Regulatory Protein; Phage Late Control Gene D Protein; Late Control Gene D Protein; Tail Protein D; Phage-Related Tail Protein; Phage Protein D; Phage Late Control D Protein; Regulator Of Late Gene Expression; Bacteriophage Protein; Pyocin R2_PP Tail Formation; Prophage Tail Protein; Prophage; Fels-2 Prophage Protein; Phage Protein D-Like; Phage Late Control; Phage Protein; Gene D Protein; Phage Tail Protein; Phage-Related Late Control Gene Protein; Phage Tail Protein D; Pyocin R2_PP Tail Formation GPD; Cytoplasmic Protein; Phage Late Control Gene D Protein GpD; Gene Late Control D Protein; Bacteriophage P2 GpD Protein; Bacteriophage Late Gene Regulator; Bacteriophage Late Control D Protein; Bacteriophage-Related Tail D Protein; Phage-Like Tail Protein; Bacteriophage P2 Tail Protein GPD; Phage-Like Protein; Late Control D Protein; Control Protein For Phage Late Genes Expression; Phage Regulator; Regulator Of Late Phage Gene Expression; Phage Late Control Gene D Protein-Like Protein; Phage Late Control Gene D Protein GPD; Late Control Gene D Protein Prophage; Bacteriophage Late Gene Control Protein D; Bacteriophage Tail Protein D; Late Gene Regulator
Number of amino acids: Translated: 360; Mature: 359
Protein sequence:
>360_residues MPANSNSRTPDERRRMARVEREPDYRITIAGRDISKRFAPRLQSLTVTESRSEEADTVDIVLDDARGDIALPKRGQEIKV SIGWAGSTLIDKGTFIINEFEYAGAPDTITVRARSAAMRDGMQERREKSWHKQTIGAIVKSIAARYSLAPAIGDTLAKIA IAHIDQTQESDMSFLTRLAKRYDAVMNVKDKRLLFMPIGTGKTASGKPLDELAIVRKDGDSHRYHVSERENYNAVRAHYH SNGHGRRKSVIVGGENNHNVKVLPEDYATKEEAMAAAQAEYNRTQRSQQTLSYSLAWGRPEVFPEMPVTVAGLKPEIDEA AWIVKRATHTLDDSGLVTDLDLEMRDDPTTDRHRSHLGKR
Sequences:
>Translated_360_residues MPANSNSRTPDERRRMARVEREPDYRITIAGRDISKRFAPRLQSLTVTESRSEEADTVDIVLDDARGDIALPKRGQEIKV SIGWAGSTLIDKGTFIINEFEYAGAPDTITVRARSAAMRDGMQERREKSWHKQTIGAIVKSIAARYSLAPAIGDTLAKIA IAHIDQTQESDMSFLTRLAKRYDAVMNVKDKRLLFMPIGTGKTASGKPLDELAIVRKDGDSHRYHVSERENYNAVRAHYH SNGHGRRKSVIVGGENNHNVKVLPEDYATKEEAMAAAQAEYNRTQRSQQTLSYSLAWGRPEVFPEMPVTVAGLKPEIDEA AWIVKRATHTLDDSGLVTDLDLEMRDDPTTDRHRSHLGKR >Mature_359_residues PANSNSRTPDERRRMARVEREPDYRITIAGRDISKRFAPRLQSLTVTESRSEEADTVDIVLDDARGDIALPKRGQEIKVS IGWAGSTLIDKGTFIINEFEYAGAPDTITVRARSAAMRDGMQERREKSWHKQTIGAIVKSIAARYSLAPAIGDTLAKIAI AHIDQTQESDMSFLTRLAKRYDAVMNVKDKRLLFMPIGTGKTASGKPLDELAIVRKDGDSHRYHVSERENYNAVRAHYHS NGHGRRKSVIVGGENNHNVKVLPEDYATKEEAMAAAQAEYNRTQRSQQTLSYSLAWGRPEVFPEMPVTVAGLKPEIDEAA WIVKRATHTLDDSGLVTDLDLEMRDDPTTDRHRSHLGKR
Specific function: Unknown
COG id: COG3500
COG function: function code R; Phage protein D
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40375; Mature: 40244
Theoretical pI: Translated: 9.34; Mature: 9.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPANSNSRTPDERRRMARVEREPDYRITIAGRDISKRFAPRLQSLTVTESRSEEADTVDI CCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHEEEECCCCCCCCEEEE VLDDARGDIALPKRGQEIKVSIGWAGSTLIDKGTFIINEFEYAGAPDTITVRARSAAMRD EEECCCCCEECCCCCCEEEEEEEECCCCEECCCCEEEEECCCCCCCCEEEEEEHHHHHHH GMQERREKSWHKQTIGAIVKSIAARYSLAPAIGDTLAKIAIAHIDQTQESDMSFLTRLAK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH RYDAVMNVKDKRLLFMPIGTGKTASGKPLDELAIVRKDGDSHRYHVSERENYNAVRAHYH HHHHHHCCCCCEEEEEECCCCCCCCCCCHHHEEEEEECCCCCEEECCCCCCCCEEEEEEC SNGHGRRKSVIVGGENNHNVKVLPEDYATKEEAMAAAQAEYNRTQRSQQTLSYSLAWGRP CCCCCCEEEEEECCCCCCCEEECCHHHCCHHHHHHHHHHHHHHHHHHHHHHEEEEECCCC EVFPEMPVTVAGLKPEIDEAAWIVKRATHTLDDSGLVTDLDLEMRDDPTTDRHRSHLGKR CCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCHHHHHHCCCC >Mature Secondary Structure PANSNSRTPDERRRMARVEREPDYRITIAGRDISKRFAPRLQSLTVTESRSEEADTVDI CCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHEEEECCCCCCCCEEEE VLDDARGDIALPKRGQEIKVSIGWAGSTLIDKGTFIINEFEYAGAPDTITVRARSAAMRD EEECCCCCEECCCCCCEEEEEEEECCCCEECCCCEEEEECCCCCCCCEEEEEEHHHHHHH GMQERREKSWHKQTIGAIVKSIAARYSLAPAIGDTLAKIAIAHIDQTQESDMSFLTRLAK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH RYDAVMNVKDKRLLFMPIGTGKTASGKPLDELAIVRKDGDSHRYHVSERENYNAVRAHYH HHHHHHCCCCCEEEEEECCCCCCCCCCCHHHEEEEEECCCCCEEECCCCCCCCEEEEEEC SNGHGRRKSVIVGGENNHNVKVLPEDYATKEEAMAAAQAEYNRTQRSQQTLSYSLAWGRP CCCCCCEEEEEECCCCCCCEEECCHHHCCHHHHHHHHHHHHHHHHHHHHHHEEEEECCCC EVFPEMPVTVAGLKPEIDEAAWIVKRATHTLDDSGLVTDLDLEMRDDPTTDRHRSHLGKR CCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA