| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
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The map label for this gene is 238025532
Identifier: 238025532
GI number: 238025532
Start: 2763766
End: 2764935
Strand: Direct
Name: 238025532
Synonym: bglu_2g22280
Alternate gene names: NA
Gene position: 2763766-2764935 (Clockwise)
Preceding gene: 238025530
Following gene: 238025539
Centisome position: 97.75
GC content: 67.69
Gene sequence:
>1170_bases ATGAAACGCAGCGCATTGACGATCGTTTCCCTGGCGACGCTCGCGGCGATGGGTTCCGCACACGCGCAATCGAGCGTGAC GTTGTACGGCGTGATCGATACGTCGCTGACGTACGTCAACCACGCCGACGGCGCCAAGAACTCGTGGCTGCTCGGCAACA GCAGCGCCGGCAACCTGGCCGGTTCGCGCTGGGGCATCAAGGGTAGCGAAGACCTCGGCGGCGGGCTGAAGGCGATCTTC CAATTGGAAAACGGCTTCGATCCGAGCACGGGCAAGCTGGGGCAGGGCAACCGCGAATTCGGCCGTCAGGCTTTCGTCGG TCTGGCCAGCGACCGCCTCGGCACCGTCACGCTGGGCCGTCAGTACGATCCGCTGATCGACCTGATCCAGCCGATCACGG CCGACAACTACTTCGGCAGCACATTCGCGACGGCCGGCGACGTCGACAACTACGACAACAGCTTCCGTGTCGACAACGCG GTCAAGTACACCTCGCCGGTGTTCGGCGGCGTGCAGTTCGAGGCGATGTACTCGTTCGGCGGCGTGGCAGGCACGACCAG CGCGGGTCAGTCGTACTCGGCGGCAGTGGCATACAACGGCGGCCCGCTGAGCGTGGCCGGCGGCTACTTCTACGCGGCCA ACTCGGCCGCCAGCGCAGCCGGCCCGGCAGGCCGCGCGACCTGGACCAGCACCTCGGGCGGCACGTTCGACGGCCCGATC AACCTCGGCTACCAGACGGCCCACTCGCTCGGCATCGCTCGCGTGGCAGGCCAGTACGCGTTCGGCGCGTTCACGCTCGG CGCGGGCTACAGCAATGCGCAATACCGCCGCGACGGCGCCTCGCTGTTCGGCCGCAACGAGCACTACAACACCGGGCAGG GCTTCCTGAACTACCAGGCGACGCCGGCCCTGCTGGTGGGCGTGGGCTACAGCTACACGAAGTCGGGCGGCGACACCTCG GCCACCTACCACCAGGCCTCGCTGGGCGCGGACTACACGCTGTCCAAGCGCACCGACGTCTACCTGACGGCGGCTTACCA GCACGCCAGCGGCACGACGAGCGACGGCGCCGGCGGCGCGGTCGCGGCGCAGGCATCGATCGGTTCGTATGGCTACGCCG GCACGAATTCGCAGACGATCGTCAACCTGGGCCTGCGTCACCGCTTCTGA
Upstream 100 bases:
>100_bases AGACTGAATTTCACTTTTCCGAAGCCAATCTGCCTGGTTAGTCTCCGTATCGCTCCATAACCACCACACGCAACAGCACT GTTAACAGGAGATGGCAGAC
Downstream 100 bases:
>100_bases GCATCGCGCCCGGCCGAATTGCGCCGACGCGAAAGGCTGCCCCCGGGCAGCCTTTTTTCATGGCGGCGGCGCCGCGCGCC CAGGCCGGATCGCCCGGGAT
Product: porin
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 389; Mature: 389
Protein sequence:
>389_residues MKRSALTIVSLATLAAMGSAHAQSSVTLYGVIDTSLTYVNHADGAKNSWLLGNSSAGNLAGSRWGIKGSEDLGGGLKAIF QLENGFDPSTGKLGQGNREFGRQAFVGLASDRLGTVTLGRQYDPLIDLIQPITADNYFGSTFATAGDVDNYDNSFRVDNA VKYTSPVFGGVQFEAMYSFGGVAGTTSAGQSYSAAVAYNGGPLSVAGGYFYAANSAASAAGPAGRATWTSTSGGTFDGPI NLGYQTAHSLGIARVAGQYAFGAFTLGAGYSNAQYRRDGASLFGRNEHYNTGQGFLNYQATPALLVGVGYSYTKSGGDTS ATYHQASLGADYTLSKRTDVYLTAAYQHASGTTSDGAGGAVAAQASIGSYGYAGTNSQTIVNLGLRHRF
Sequences:
>Translated_389_residues MKRSALTIVSLATLAAMGSAHAQSSVTLYGVIDTSLTYVNHADGAKNSWLLGNSSAGNLAGSRWGIKGSEDLGGGLKAIF QLENGFDPSTGKLGQGNREFGRQAFVGLASDRLGTVTLGRQYDPLIDLIQPITADNYFGSTFATAGDVDNYDNSFRVDNA VKYTSPVFGGVQFEAMYSFGGVAGTTSAGQSYSAAVAYNGGPLSVAGGYFYAANSAASAAGPAGRATWTSTSGGTFDGPI NLGYQTAHSLGIARVAGQYAFGAFTLGAGYSNAQYRRDGASLFGRNEHYNTGQGFLNYQATPALLVGVGYSYTKSGGDTS ATYHQASLGADYTLSKRTDVYLTAAYQHASGTTSDGAGGAVAAQASIGSYGYAGTNSQTIVNLGLRHRF >Mature_389_residues MKRSALTIVSLATLAAMGSAHAQSSVTLYGVIDTSLTYVNHADGAKNSWLLGNSSAGNLAGSRWGIKGSEDLGGGLKAIF QLENGFDPSTGKLGQGNREFGRQAFVGLASDRLGTVTLGRQYDPLIDLIQPITADNYFGSTFATAGDVDNYDNSFRVDNA VKYTSPVFGGVQFEAMYSFGGVAGTTSAGQSYSAAVAYNGGPLSVAGGYFYAANSAASAAGPAGRATWTSTSGGTFDGPI NLGYQTAHSLGIARVAGQYAFGAFTLGAGYSNAQYRRDGASLFGRNEHYNTGQGFLNYQATPALLVGVGYSYTKSGGDTS ATYHQASLGADYTLSKRTDVYLTAAYQHASGTTSDGAGGAVAAQASIGSYGYAGTNSQTIVNLGLRHRF
Specific function: Forms anion selective channels [H]
COG id: COG3203
COG function: function code M; Outer membrane protein (porin)
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To bacterial outer membrane proteins and porins [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001702 - InterPro: IPR002299 [H]
Pfam domain/function: PF00267 Porin_1 [H]
EC number: NA
Molecular weight: Translated: 40091; Mature: 40091
Theoretical pI: Translated: 7.85; Mature: 7.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 0.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 0.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRSALTIVSLATLAAMGSAHAQSSVTLYGVIDTSLTYVNHADGAKNSWLLGNSSAGNLA CCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECEEEEEECCCCCCCCEEEECCCCCCCC GSRWGIKGSEDLGGGLKAIFQLENGFDPSTGKLGQGNREFGRQAFVGLASDRLGTVTLGR CCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHEECCCCCEEEEECC QYDPLIDLIQPITADNYFGSTFATAGDVDNYDNSFRVDNAVKYTSPVFGGVQFEAMYSFG CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCEEEECCCCCCCEEEEEEEECC GVAGTTSAGQSYSAAVAYNGGPLSVAGGYFYAANSAASAAGPAGRATWTSTSGGTFDGPI CCCCCCCCCCCEEEEEEECCCCEEEECCEEEEECCCCCCCCCCCCCEEECCCCCCCCCCC NLGYQTAHSLGIARVAGQYAFGAFTLGAGYSNAQYRRDGASLFGRNEHYNTGQGFLNYQA CCCHHHHHHHHHHHHHCCHHEEEEEECCCCCCCHHHCCCHHHCCCCCCCCCCCCEEEECC TPALLVGVGYSYTKSGGDTSATYHQASLGADYTLSKRTDVYLTAAYQHASGTTSDGAGGA CCEEEEECCCEEECCCCCCCCEEEHHHCCCCEEECCCCCEEEEEEEECCCCCCCCCCCCE VAAQASIGSYGYAGTNSQTIVNLGLRHRF EEEECCCCCCCCCCCCCCEEEEECCCCCC >Mature Secondary Structure MKRSALTIVSLATLAAMGSAHAQSSVTLYGVIDTSLTYVNHADGAKNSWLLGNSSAGNLA CCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECEEEEEECCCCCCCCEEEECCCCCCCC GSRWGIKGSEDLGGGLKAIFQLENGFDPSTGKLGQGNREFGRQAFVGLASDRLGTVTLGR CCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHEECCCCCEEEEECC QYDPLIDLIQPITADNYFGSTFATAGDVDNYDNSFRVDNAVKYTSPVFGGVQFEAMYSFG CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCEEEECCCCCCCEEEEEEEECC GVAGTTSAGQSYSAAVAYNGGPLSVAGGYFYAANSAASAAGPAGRATWTSTSGGTFDGPI CCCCCCCCCCCEEEEEEECCCCEEEECCEEEEECCCCCCCCCCCCCEEECCCCCCCCCCC NLGYQTAHSLGIARVAGQYAFGAFTLGAGYSNAQYRRDGASLFGRNEHYNTGQGFLNYQA CCCHHHHHHHHHHHHHCCHHEEEEEECCCCCCCHHHCCCHHHCCCCCCCCCCCCEEEECC TPALLVGVGYSYTKSGGDTSATYHQASLGADYTLSKRTDVYLTAAYQHASGTTSDGAGGA CCEEEEECCCEEECCCCCCCCEEEHHHCCCCEEECCCCCEEEEEEEECCCCCCCCCCCCE VAAQASIGSYGYAGTNSQTIVNLGLRHRF EEEECCCCCCCCCCCCCCEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1658537; 12910271 [H]