Definition Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence.
Accession NC_012721
Length 2,827,333

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The map label for this gene is 238025532

Identifier: 238025532

GI number: 238025532

Start: 2763766

End: 2764935

Strand: Direct

Name: 238025532

Synonym: bglu_2g22280

Alternate gene names: NA

Gene position: 2763766-2764935 (Clockwise)

Preceding gene: 238025530

Following gene: 238025539

Centisome position: 97.75

GC content: 67.69

Gene sequence:

>1170_bases
ATGAAACGCAGCGCATTGACGATCGTTTCCCTGGCGACGCTCGCGGCGATGGGTTCCGCACACGCGCAATCGAGCGTGAC
GTTGTACGGCGTGATCGATACGTCGCTGACGTACGTCAACCACGCCGACGGCGCCAAGAACTCGTGGCTGCTCGGCAACA
GCAGCGCCGGCAACCTGGCCGGTTCGCGCTGGGGCATCAAGGGTAGCGAAGACCTCGGCGGCGGGCTGAAGGCGATCTTC
CAATTGGAAAACGGCTTCGATCCGAGCACGGGCAAGCTGGGGCAGGGCAACCGCGAATTCGGCCGTCAGGCTTTCGTCGG
TCTGGCCAGCGACCGCCTCGGCACCGTCACGCTGGGCCGTCAGTACGATCCGCTGATCGACCTGATCCAGCCGATCACGG
CCGACAACTACTTCGGCAGCACATTCGCGACGGCCGGCGACGTCGACAACTACGACAACAGCTTCCGTGTCGACAACGCG
GTCAAGTACACCTCGCCGGTGTTCGGCGGCGTGCAGTTCGAGGCGATGTACTCGTTCGGCGGCGTGGCAGGCACGACCAG
CGCGGGTCAGTCGTACTCGGCGGCAGTGGCATACAACGGCGGCCCGCTGAGCGTGGCCGGCGGCTACTTCTACGCGGCCA
ACTCGGCCGCCAGCGCAGCCGGCCCGGCAGGCCGCGCGACCTGGACCAGCACCTCGGGCGGCACGTTCGACGGCCCGATC
AACCTCGGCTACCAGACGGCCCACTCGCTCGGCATCGCTCGCGTGGCAGGCCAGTACGCGTTCGGCGCGTTCACGCTCGG
CGCGGGCTACAGCAATGCGCAATACCGCCGCGACGGCGCCTCGCTGTTCGGCCGCAACGAGCACTACAACACCGGGCAGG
GCTTCCTGAACTACCAGGCGACGCCGGCCCTGCTGGTGGGCGTGGGCTACAGCTACACGAAGTCGGGCGGCGACACCTCG
GCCACCTACCACCAGGCCTCGCTGGGCGCGGACTACACGCTGTCCAAGCGCACCGACGTCTACCTGACGGCGGCTTACCA
GCACGCCAGCGGCACGACGAGCGACGGCGCCGGCGGCGCGGTCGCGGCGCAGGCATCGATCGGTTCGTATGGCTACGCCG
GCACGAATTCGCAGACGATCGTCAACCTGGGCCTGCGTCACCGCTTCTGA

Upstream 100 bases:

>100_bases
AGACTGAATTTCACTTTTCCGAAGCCAATCTGCCTGGTTAGTCTCCGTATCGCTCCATAACCACCACACGCAACAGCACT
GTTAACAGGAGATGGCAGAC

Downstream 100 bases:

>100_bases
GCATCGCGCCCGGCCGAATTGCGCCGACGCGAAAGGCTGCCCCCGGGCAGCCTTTTTTCATGGCGGCGGCGCCGCGCGCC
CAGGCCGGATCGCCCGGGAT

Product: porin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 389; Mature: 389

Protein sequence:

>389_residues
MKRSALTIVSLATLAAMGSAHAQSSVTLYGVIDTSLTYVNHADGAKNSWLLGNSSAGNLAGSRWGIKGSEDLGGGLKAIF
QLENGFDPSTGKLGQGNREFGRQAFVGLASDRLGTVTLGRQYDPLIDLIQPITADNYFGSTFATAGDVDNYDNSFRVDNA
VKYTSPVFGGVQFEAMYSFGGVAGTTSAGQSYSAAVAYNGGPLSVAGGYFYAANSAASAAGPAGRATWTSTSGGTFDGPI
NLGYQTAHSLGIARVAGQYAFGAFTLGAGYSNAQYRRDGASLFGRNEHYNTGQGFLNYQATPALLVGVGYSYTKSGGDTS
ATYHQASLGADYTLSKRTDVYLTAAYQHASGTTSDGAGGAVAAQASIGSYGYAGTNSQTIVNLGLRHRF

Sequences:

>Translated_389_residues
MKRSALTIVSLATLAAMGSAHAQSSVTLYGVIDTSLTYVNHADGAKNSWLLGNSSAGNLAGSRWGIKGSEDLGGGLKAIF
QLENGFDPSTGKLGQGNREFGRQAFVGLASDRLGTVTLGRQYDPLIDLIQPITADNYFGSTFATAGDVDNYDNSFRVDNA
VKYTSPVFGGVQFEAMYSFGGVAGTTSAGQSYSAAVAYNGGPLSVAGGYFYAANSAASAAGPAGRATWTSTSGGTFDGPI
NLGYQTAHSLGIARVAGQYAFGAFTLGAGYSNAQYRRDGASLFGRNEHYNTGQGFLNYQATPALLVGVGYSYTKSGGDTS
ATYHQASLGADYTLSKRTDVYLTAAYQHASGTTSDGAGGAVAAQASIGSYGYAGTNSQTIVNLGLRHRF
>Mature_389_residues
MKRSALTIVSLATLAAMGSAHAQSSVTLYGVIDTSLTYVNHADGAKNSWLLGNSSAGNLAGSRWGIKGSEDLGGGLKAIF
QLENGFDPSTGKLGQGNREFGRQAFVGLASDRLGTVTLGRQYDPLIDLIQPITADNYFGSTFATAGDVDNYDNSFRVDNA
VKYTSPVFGGVQFEAMYSFGGVAGTTSAGQSYSAAVAYNGGPLSVAGGYFYAANSAASAAGPAGRATWTSTSGGTFDGPI
NLGYQTAHSLGIARVAGQYAFGAFTLGAGYSNAQYRRDGASLFGRNEHYNTGQGFLNYQATPALLVGVGYSYTKSGGDTS
ATYHQASLGADYTLSKRTDVYLTAAYQHASGTTSDGAGGAVAAQASIGSYGYAGTNSQTIVNLGLRHRF

Specific function: Forms anion selective channels [H]

COG id: COG3203

COG function: function code M; Outer membrane protein (porin)

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To bacterial outer membrane proteins and porins [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001702
- InterPro:   IPR002299 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 40091; Mature: 40091

Theoretical pI: Translated: 7.85; Mature: 7.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRSALTIVSLATLAAMGSAHAQSSVTLYGVIDTSLTYVNHADGAKNSWLLGNSSAGNLA
CCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECEEEEEECCCCCCCCEEEECCCCCCCC
GSRWGIKGSEDLGGGLKAIFQLENGFDPSTGKLGQGNREFGRQAFVGLASDRLGTVTLGR
CCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHEECCCCCEEEEECC
QYDPLIDLIQPITADNYFGSTFATAGDVDNYDNSFRVDNAVKYTSPVFGGVQFEAMYSFG
CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCEEEECCCCCCCEEEEEEEECC
GVAGTTSAGQSYSAAVAYNGGPLSVAGGYFYAANSAASAAGPAGRATWTSTSGGTFDGPI
CCCCCCCCCCCEEEEEEECCCCEEEECCEEEEECCCCCCCCCCCCCEEECCCCCCCCCCC
NLGYQTAHSLGIARVAGQYAFGAFTLGAGYSNAQYRRDGASLFGRNEHYNTGQGFLNYQA
CCCHHHHHHHHHHHHHCCHHEEEEEECCCCCCCHHHCCCHHHCCCCCCCCCCCCEEEECC
TPALLVGVGYSYTKSGGDTSATYHQASLGADYTLSKRTDVYLTAAYQHASGTTSDGAGGA
CCEEEEECCCEEECCCCCCCCEEEHHHCCCCEEECCCCCEEEEEEEECCCCCCCCCCCCE
VAAQASIGSYGYAGTNSQTIVNLGLRHRF
EEEECCCCCCCCCCCCCCEEEEECCCCCC
>Mature Secondary Structure
MKRSALTIVSLATLAAMGSAHAQSSVTLYGVIDTSLTYVNHADGAKNSWLLGNSSAGNLA
CCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECEEEEEECCCCCCCCEEEECCCCCCCC
GSRWGIKGSEDLGGGLKAIFQLENGFDPSTGKLGQGNREFGRQAFVGLASDRLGTVTLGR
CCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHEECCCCCEEEEECC
QYDPLIDLIQPITADNYFGSTFATAGDVDNYDNSFRVDNAVKYTSPVFGGVQFEAMYSFG
CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCEEEECCCCCCCEEEEEEEECC
GVAGTTSAGQSYSAAVAYNGGPLSVAGGYFYAANSAASAAGPAGRATWTSTSGGTFDGPI
CCCCCCCCCCCEEEEEEECCCCEEEECCEEEEECCCCCCCCCCCCCEEECCCCCCCCCCC
NLGYQTAHSLGIARVAGQYAFGAFTLGAGYSNAQYRRDGASLFGRNEHYNTGQGFLNYQA
CCCHHHHHHHHHHHHHCCHHEEEEEECCCCCCCHHHCCCHHHCCCCCCCCCCCCEEEECC
TPALLVGVGYSYTKSGGDTSATYHQASLGADYTLSKRTDVYLTAAYQHASGTTSDGAGGA
CCEEEEECCCEEECCCCCCCCEEEHHHCCCCEEECCCCCEEEEEEEECCCCCCCCCCCCE
VAAQASIGSYGYAGTNSQTIVNLGLRHRF
EEEECCCCCCCCCCCCCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1658537; 12910271 [H]