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The map label for this gene is stc [H]

Identifier: 238025480

GI number: 238025480

Start: 2697186

End: 2699225

Strand: Direct

Name: stc [H]

Synonym: bglu_2g21720

Alternate gene names: 238025480

Gene position: 2697186-2699225 (Clockwise)

Preceding gene: 238025474

Following gene: 238025481

Centisome position: 95.4

GC content: 76.42

Gene sequence:

>2040_bases
ATGACGCCCTCCCCCGCCGCCCCGCCCCTTCGCCCGCGCATCTGGGCGGTCGGCATCAGCCGGCTGCGCGCGCTGTTCCG
CGATCTCGCCGACGAATACGAAGCGCGCGCCGACCTGCGCATCGTCACGCGCGGCTACGACGAGGCGATCGCCGCGCTCG
CCACGGCGGGCGCCGAGCGGCCCGACGCGATCGTCGCCGCCGGCTCGAACGGCACCTATCTGAAGACCCGCGTCGCGGTG
CCGGTGGTGCTGGTCAGCCCGACCGGCTACGACCTGCTGCACGCGCTGGCGCGCGCGCGGCGCGACGCGAGCTCGCCGGT
GGCCCTCGTCAACTACGGCGACACACCCGCCGAGCTGCGCCGCTTCGCGGCCGCGTTCGGGCTCGACATCGTGTTCGCGT
CGTACCAGTCGCGCCAGGAAGCCGAGGCCCGCGTCTACGAACTGCGCGATCGCGGCATCGACACGGTGGTGGGCCCCGGG
CTCGTCACCGACCTGGCCGCGAGCGCCGGCATGAGCGCGGTATTCCTCTACTCGCACGCCTCGGTGCGCGCGGCGGTGGA
TACCGCGCTCGAAGTCGCGCACGCCACGCACGCCGAGACGCTGCGCCGCCAGCGCCTGGACAACCTGCTCCAGCATCTGC
GCGACGGCGTGGTGGCGCTCGACGCGCGGGGCCGCGTGGAGGCGATCAACGAACGGCTCGCGCTCGCGCTCGGCGTCGAT
CCGCAGGCCGCCGTCGGCCGCGCGCTCGACGAGCTGACGCCCGAGCTGGCGGCGCTGCGCGCGGCCGACGGCGACACGCT
CGCGACCGTGCGCGGCGTGCGCTACGTGGTGCATCGCGGGCCGCTCGCGGCGAACGGCGCGGCCACCGGCAGCGTGCTGA
CCTTCCAGGAGTCGCGCGCGGTCGAACGGCTCGACCGCACGCTGCGTTCGCAGCCGCACGCGCAGCGCTTCGCGGCGCGC
TACCGGCTCGACGACGTGCTCGGCGAGTCCGCGCCGATGCAGCGCGTGCGCGAGCTGGCGCGCCGCTACGCGAAGTCGGA
CGCCACCGTGCTGGTGCTCGGCGAGAGCGGCACCGGCAAGGAGATGATCGCGCAGAGCCTGCATGCGCTGAGCGCGCGCA
GCCCGTTCCCGTTCGTGGCGATGAACTGCGGCGCGTTTCCGGAGGCGCTGCTGGAAAGCGAACTGTTCGGCTATGACGAC
GGCGCGTTCACGGGGGCGCGGCGCGGCGGCAAGGCGGGGCTGTTCGAGGCCGCGCATCGCGGCACGCTGTTCCTCGACGA
GATCGGCGAGATGCCGCTGTCGCTGCAAAGCCGCCTGCTGCGCGTGCTGCAGGAGCGCGAGGTGGTGCGGCTCGGCTCGA
CCGAACCGATCCGCATCGACGTGCGGATCGTGGCGGCCACCCACCGCTCGCTGCTCGCCGCGGTGGAGGCGGGCAGCTTC
CGCGCCGACCTCTATTACCGCCTGAACATCCTCAACATCGCGCTGCCGCCGCTGCGCGAGCGGCCCGCCGACATCGCCGC
GCTGGCGGCCGAGCTGCTCGCGCAGGCAGCCCGGCGCGAGCCGCGGCTGGCCGCCCGGCTGCCCGGCGCCGCGGAGGCGG
CGCGCGCCGTGGCGCCGCTGGCCGCCGCGCTCGCGCGCCACCGCTGGCCCGGCAACGTGCGCGAGCTGCAGAACGTGATC
GAGCGGCTAGCCGTGGAGCTGGCCGACGGCGACGCCGCGCTCGCGCCCACCGCCGACACGCTGCGCGCAATCGCGCCCGA
GCTGTTCGCGGCCCCCGGCGGCCGCGCCGGTGCCGGCAGCGAGGCCGCGCGCGGCCGGCACCGGGCCGACGCCGCGGCGC
CGGCCCAGGCGGCCCAGGCGGCCCAGGCGCCCGCCCCGACGCTCGGCGAGCGCCGCCGGCGCGTGGAGGCCGACGAGATC
CGCGCCGTGCTCGACGCCTGCGGCGGCGACCGGGCACGCGCCTGCGCCGTGCTCGGCATCAGCAAGACCACGCTGTGGCG
CAAGCTGGCCGCCGTCGAGGGCCGGCGCGGCCGCGGCTGA

Upstream 100 bases:

>100_bases
GCACCGGCCAGTTTCATGATGGAAATCCGCGATTCCATATTTGAAATGCAATTGCGATAATGCACGCGAACCCGACCATG
CTTCCGACTCCCCGGCCTCC

Downstream 100 bases:

>100_bases
GGCCCCGGGACGGCGCTTGCCGCCGGCTCCCCATCCGGCGCGCCTTGCAGGGGTCAAGAAGGGCGACGTTTACTTTGAGA
TATTCAACGGCGGCACAAAA

Product: propionate catabolism operon regulatory protein PrpR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 679; Mature: 678

Protein sequence:

>679_residues
MTPSPAAPPLRPRIWAVGISRLRALFRDLADEYEARADLRIVTRGYDEAIAALATAGAERPDAIVAAGSNGTYLKTRVAV
PVVLVSPTGYDLLHALARARRDASSPVALVNYGDTPAELRRFAAAFGLDIVFASYQSRQEAEARVYELRDRGIDTVVGPG
LVTDLAASAGMSAVFLYSHASVRAAVDTALEVAHATHAETLRRQRLDNLLQHLRDGVVALDARGRVEAINERLALALGVD
PQAAVGRALDELTPELAALRAADGDTLATVRGVRYVVHRGPLAANGAATGSVLTFQESRAVERLDRTLRSQPHAQRFAAR
YRLDDVLGESAPMQRVRELARRYAKSDATVLVLGESGTGKEMIAQSLHALSARSPFPFVAMNCGAFPEALLESELFGYDD
GAFTGARRGGKAGLFEAAHRGTLFLDEIGEMPLSLQSRLLRVLQEREVVRLGSTEPIRIDVRIVAATHRSLLAAVEAGSF
RADLYYRLNILNIALPPLRERPADIAALAAELLAQAARREPRLAARLPGAAEAARAVAPLAAALARHRWPGNVRELQNVI
ERLAVELADGDAALAPTADTLRAIAPELFAAPGGRAGAGSEAARGRHRADAAAPAQAAQAAQAPAPTLGERRRRVEADEI
RAVLDACGGDRARACAVLGISKTTLWRKLAAVEGRRGRG

Sequences:

>Translated_679_residues
MTPSPAAPPLRPRIWAVGISRLRALFRDLADEYEARADLRIVTRGYDEAIAALATAGAERPDAIVAAGSNGTYLKTRVAV
PVVLVSPTGYDLLHALARARRDASSPVALVNYGDTPAELRRFAAAFGLDIVFASYQSRQEAEARVYELRDRGIDTVVGPG
LVTDLAASAGMSAVFLYSHASVRAAVDTALEVAHATHAETLRRQRLDNLLQHLRDGVVALDARGRVEAINERLALALGVD
PQAAVGRALDELTPELAALRAADGDTLATVRGVRYVVHRGPLAANGAATGSVLTFQESRAVERLDRTLRSQPHAQRFAAR
YRLDDVLGESAPMQRVRELARRYAKSDATVLVLGESGTGKEMIAQSLHALSARSPFPFVAMNCGAFPEALLESELFGYDD
GAFTGARRGGKAGLFEAAHRGTLFLDEIGEMPLSLQSRLLRVLQEREVVRLGSTEPIRIDVRIVAATHRSLLAAVEAGSF
RADLYYRLNILNIALPPLRERPADIAALAAELLAQAARREPRLAARLPGAAEAARAVAPLAAALARHRWPGNVRELQNVI
ERLAVELADGDAALAPTADTLRAIAPELFAAPGGRAGAGSEAARGRHRADAAAPAQAAQAAQAPAPTLGERRRRVEADEI
RAVLDACGGDRARACAVLGISKTTLWRKLAAVEGRRGRG
>Mature_678_residues
TPSPAAPPLRPRIWAVGISRLRALFRDLADEYEARADLRIVTRGYDEAIAALATAGAERPDAIVAAGSNGTYLKTRVAVP
VVLVSPTGYDLLHALARARRDASSPVALVNYGDTPAELRRFAAAFGLDIVFASYQSRQEAEARVYELRDRGIDTVVGPGL
VTDLAASAGMSAVFLYSHASVRAAVDTALEVAHATHAETLRRQRLDNLLQHLRDGVVALDARGRVEAINERLALALGVDP
QAAVGRALDELTPELAALRAADGDTLATVRGVRYVVHRGPLAANGAATGSVLTFQESRAVERLDRTLRSQPHAQRFAARY
RLDDVLGESAPMQRVRELARRYAKSDATVLVLGESGTGKEMIAQSLHALSARSPFPFVAMNCGAFPEALLESELFGYDDG
AFTGARRGGKAGLFEAAHRGTLFLDEIGEMPLSLQSRLLRVLQEREVVRLGSTEPIRIDVRIVAATHRSLLAAVEAGSFR
ADLYYRLNILNIALPPLRERPADIAALAAELLAQAARREPRLAARLPGAAEAARAVAPLAAALARHRWPGNVRELQNVIE
RLAVELADGDAALAPTADTLRAIAPELFAAPGGRAGAGSEAARGRHRADAAAPAQAAQAAQAPAPTLGERRRRVEADEIR
AVLDACGGDRARACAVLGISKTTLWRKLAAVEGRRGRG

Specific function: Involved In The Transcriptional Regulation Of The Propionate Catabolism Operon. [C]

COG id: COG3829

COG function: function code KT; Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI1786524, Length=387, Percent_Identity=43.9276485788114, Blast_Score=280, Evalue=2e-76,
Organism=Escherichia coli, GI1789233, Length=380, Percent_Identity=37.6315789473684, Blast_Score=248, Evalue=6e-67,
Organism=Escherichia coli, GI1788550, Length=356, Percent_Identity=41.0112359550562, Blast_Score=243, Evalue=4e-65,
Organism=Escherichia coli, GI87082117, Length=276, Percent_Identity=47.463768115942, Blast_Score=237, Evalue=2e-63,
Organism=Escherichia coli, GI1789087, Length=309, Percent_Identity=45.9546925566343, Blast_Score=233, Evalue=4e-62,
Organism=Escherichia coli, GI1788905, Length=364, Percent_Identity=40.6593406593407, Blast_Score=229, Evalue=5e-61,
Organism=Escherichia coli, GI1790437, Length=348, Percent_Identity=42.2413793103448, Blast_Score=224, Evalue=1e-59,
Organism=Escherichia coli, GI1790299, Length=349, Percent_Identity=40.4011461318052, Blast_Score=221, Evalue=8e-59,
Organism=Escherichia coli, GI87081872, Length=244, Percent_Identity=47.5409836065574, Blast_Score=203, Evalue=3e-53,
Organism=Escherichia coli, GI87082152, Length=240, Percent_Identity=44.1666666666667, Blast_Score=192, Evalue=9e-50,
Organism=Escherichia coli, GI1787583, Length=309, Percent_Identity=36.2459546925566, Blast_Score=181, Evalue=1e-46,
Organism=Escherichia coli, GI87081858, Length=481, Percent_Identity=29.5218295218295, Blast_Score=151, Evalue=1e-37,
Organism=Escherichia coli, GI1789828, Length=249, Percent_Identity=34.136546184739, Blast_Score=119, Evalue=8e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR020441
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR013767
- InterPro:   IPR002078 [H]

Pfam domain/function: PF02954 HTH_8; PF00989 PAS; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 72443; Mature: 72312

Theoretical pI: Translated: 9.78; Mature: 9.78

Prosite motif: PS50112 PAS ; PS00675 SIGMA54_INTERACT_1 ; PS00688 SIGMA54_INTERACT_3 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPSPAAPPLRPRIWAVGISRLRALFRDLADEYEARADLRIVTRGYDEAIAALATAGAER
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCC
PDAIVAAGSNGTYLKTRVAVPVVLVSPTGYDLLHALARARRDASSPVALVNYGDTPAELR
CCEEEEECCCCCEEEEEEEEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEECCCCHHHHH
RFAAAFGLDIVFASYQSRQEAEARVYELRDRGIDTVVGPGLVTDLAASAGMSAVFLYSHA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHCCCCEEEEEECH
SVRAAVDTALEVAHATHAETLRRQRLDNLLQHLRDGVVALDARGRVEAINERLALALGVD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHEEEECCC
PQAAVGRALDELTPELAALRAADGDTLATVRGVRYVVHRGPLAANGAATGSVLTFQESRA
CHHHHHHHHHHHCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEHHHHH
VERLDRTLRSQPHAQRFAARYRLDDVLGESAPMQRVRELARRYAKSDATVLVLGESGTGK
HHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCH
EMIAQSLHALSARSPFPFVAMNCGAFPEALLESELFGYDDGAFTGARRGGKAGLFEAAHR
HHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCC
GTLFLDEIGEMPLSLQSRLLRVLQEREVVRLGSTEPIRIDVRIVAATHRSLLAAVEAGSF
CCEEHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEHHHHHHHHHHHCCCE
RADLYYRLNILNIALPPLRERPADIAALAAELLAQAARREPRLAARLPGAAEAARAVAPL
EEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHH
AAALARHRWPGNVRELQNVIERLAVELADGDAALAPTADTLRAIAPELFAAPGGRAGAGS
HHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCC
EAARGRHRADAAAPAQAAQAAQAPAPTLGERRRRVEADEIRAVLDACGGDRARACAVLGI
HHHCCCHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHHCCCCCHHEEEEECC
SKTTLWRKLAAVEGRRGRG
HHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TPSPAAPPLRPRIWAVGISRLRALFRDLADEYEARADLRIVTRGYDEAIAALATAGAER
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCC
PDAIVAAGSNGTYLKTRVAVPVVLVSPTGYDLLHALARARRDASSPVALVNYGDTPAELR
CCEEEEECCCCCEEEEEEEEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEECCCCHHHHH
RFAAAFGLDIVFASYQSRQEAEARVYELRDRGIDTVVGPGLVTDLAASAGMSAVFLYSHA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHCCCCEEEEEECH
SVRAAVDTALEVAHATHAETLRRQRLDNLLQHLRDGVVALDARGRVEAINERLALALGVD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHEEEECCC
PQAAVGRALDELTPELAALRAADGDTLATVRGVRYVVHRGPLAANGAATGSVLTFQESRA
CHHHHHHHHHHHCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEHHHHH
VERLDRTLRSQPHAQRFAARYRLDDVLGESAPMQRVRELARRYAKSDATVLVLGESGTGK
HHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCH
EMIAQSLHALSARSPFPFVAMNCGAFPEALLESELFGYDDGAFTGARRGGKAGLFEAAHR
HHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCC
GTLFLDEIGEMPLSLQSRLLRVLQEREVVRLGSTEPIRIDVRIVAATHRSLLAAVEAGSF
CCEEHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEHHHHHHHHHHHCCCE
RADLYYRLNILNIALPPLRERPADIAALAAELLAQAARREPRLAARLPGAAEAARAVAPL
EEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHH
AAALARHRWPGNVRELQNVIERLAVELADGDAALAPTADTLRAIAPELFAAPGGRAGAGS
HHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCC
EAARGRHRADAAAPAQAAQAAQAPAPTLGERRRRVEADEIRAVLDACGGDRARACAVLGI
HHHCCCHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHHCCCCCHHEEEEECC
SKTTLWRKLAAVEGRRGRG
HHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA