| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
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The map label for this gene is ynfM [H]
Identifier: 238025444
GI number: 238025444
Start: 2649675
End: 2651087
Strand: Direct
Name: ynfM [H]
Synonym: bglu_2g21340
Alternate gene names: 238025444
Gene position: 2649675-2651087 (Clockwise)
Preceding gene: 238025442
Following gene: 238025445
Centisome position: 93.72
GC content: 74.31
Gene sequence:
>1413_bases ATGAGCGACAAGACGACGACTCGCGCCGCGTTTTTCCTATGCGGCTTCGCGGCCTTCCTGAATCTCTATTCGACGCAGGG CATCCTGCGCGAGCTGGCCGCGGCTTTCGCCGTGAGCGCCGAGCGGGCCGGCCAGGGCGTGAGCGCGACCACGCTGGCCG TCGCCATTATCGCGCCGTTCGCCGGCACGCTGAGCGCGCGCTTCGCGCGCCGCCGCGTGATCGCGTGGGCGGCGATCGCA GTCGCGCTGCCGGCGCTCGGCTGCGCGCACGCGGACGGCTTCGGCGCGTTCCTGGCCGCGCGCTTCGCGGCCGGCGCGCT GGTGCCGTTCATCTTCGCGATCTCGATCGCCTACATCGGCGAGCTGTTCGGCCCGGCCGCGGCCACCGAGGTCGGCGCGC TGTTCGTGGCCGGCACCACGCTCGGCGGTTTCGCCGGGCGCTTCGTCACGAATGCGCTGACCGCGCTGCTGGGCTGGCGC CACGCACTCGACCTGGTCGCGCTGCTATGCCTCGCCGCCGGTCTCGCGATCCACGCCTGGCTGCCCGCCGCCGCGCCGCC GCCCGCGCCCGGCCCCGCCGCGCCGCGCCCATGGCGGCTCGTCACGCGCCCCGCGCTGCTCGCGTCGTTCGCGCTCGGCG CCTGCGTGCTGGCCTCGCAGGTCGCCACGTTCACGTTCGTCGGGCTGCGCCTCGCCGGCGCGCCGTTCCGCTTCACGACC TTCGGGATCGGCGCGATCTACGCGGTATTCCTGGTGGCGGTGGTGGTCACGCCGCTCGCGGGGCGCATGGCGGGCCGCCG CGGCCCGCGCGAGCTCGCGCTGGGCGCCGCGGCGCTGGCCGTCGCCGGCGCGCTGCTGACCCTGTCCGGCCAGATCACCG TGATCCTGCTCGGGCTCGCGCTCGGCTCGACCGCCGTGTTCGTCGAGCAGGCCTGCGCCAACGCGTTCGTCTCGCAGGCG GCGCCGGCCGCGCGCTCCACCGCGATCGGCCTCTACCTGTCGTGCTACTACCTCGGCGGCAGCCTCGGCTCGCTGCTGCC GATACCGGCCTGGCATCGCTGGGGCTGGGCCGGCTGCATCGCCTTCGTCGTCGCGGCGCAACTGCTCGTGGCAGTGCTGG CGGCGCGGTTCTGGCGCGCGCCGCGTGCCGCGGATACGCCGGCGGCCATCGCGCATGCCGGCCCCGCGCGGCGCGGCAGC CGAGCCACGGCACGTGATTTTCCTGTTGCACGCTTCGCGCCTCGGAGCATAGAATCCGCCGTGCCCGGCAGCAACGCACG CGATACGCACGCCATGCGCGAAGCGCCGCCACGGGCTCGCCCGTTCACTTCCGAGAAATCAACGGTAACCATGCCTAGCA GCGACAGTTGTCCGCCGGCCCCGACCGGCGACCTGAGCCACCGCACGCGCTAG
Upstream 100 bases:
>100_bases TGGTGGTGGTTCCGGTATCAACGGCGACGAAAACGGTATTGGCGCGCGCCGCGCGGCGTCGTCAGACTGTCGGCTGGACC TGACGGGACATAGCGTTTCC
Downstream 100 bases:
>100_bases CGACCACAGTCTTCTGTCGCCGCTGCCCGTGTGATTCGAGCAGCGCGCGCCTTGCGAACCCGTCCCGGGTCCGTTCCGCC GCCCGCTTCCATCCCGTCGT
Product: major facilitator superfamily transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 470; Mature: 469
Protein sequence:
>470_residues MSDKTTTRAAFFLCGFAAFLNLYSTQGILRELAAAFAVSAERAGQGVSATTLAVAIIAPFAGTLSARFARRRVIAWAAIA VALPALGCAHADGFGAFLAARFAAGALVPFIFAISIAYIGELFGPAAATEVGALFVAGTTLGGFAGRFVTNALTALLGWR HALDLVALLCLAAGLAIHAWLPAAAPPPAPGPAAPRPWRLVTRPALLASFALGACVLASQVATFTFVGLRLAGAPFRFTT FGIGAIYAVFLVAVVVTPLAGRMAGRRGPRELALGAAALAVAGALLTLSGQITVILLGLALGSTAVFVEQACANAFVSQA APAARSTAIGLYLSCYYLGGSLGSLLPIPAWHRWGWAGCIAFVVAAQLLVAVLAARFWRAPRAADTPAAIAHAGPARRGS RATARDFPVARFAPRSIESAVPGSNARDTHAMREAPPRARPFTSEKSTVTMPSSDSCPPAPTGDLSHRTR
Sequences:
>Translated_470_residues MSDKTTTRAAFFLCGFAAFLNLYSTQGILRELAAAFAVSAERAGQGVSATTLAVAIIAPFAGTLSARFARRRVIAWAAIA VALPALGCAHADGFGAFLAARFAAGALVPFIFAISIAYIGELFGPAAATEVGALFVAGTTLGGFAGRFVTNALTALLGWR HALDLVALLCLAAGLAIHAWLPAAAPPPAPGPAAPRPWRLVTRPALLASFALGACVLASQVATFTFVGLRLAGAPFRFTT FGIGAIYAVFLVAVVVTPLAGRMAGRRGPRELALGAAALAVAGALLTLSGQITVILLGLALGSTAVFVEQACANAFVSQA APAARSTAIGLYLSCYYLGGSLGSLLPIPAWHRWGWAGCIAFVVAAQLLVAVLAARFWRAPRAADTPAAIAHAGPARRGS RATARDFPVARFAPRSIESAVPGSNARDTHAMREAPPRARPFTSEKSTVTMPSSDSCPPAPTGDLSHRTR >Mature_469_residues SDKTTTRAAFFLCGFAAFLNLYSTQGILRELAAAFAVSAERAGQGVSATTLAVAIIAPFAGTLSARFARRRVIAWAAIAV ALPALGCAHADGFGAFLAARFAAGALVPFIFAISIAYIGELFGPAAATEVGALFVAGTTLGGFAGRFVTNALTALLGWRH ALDLVALLCLAAGLAIHAWLPAAAPPPAPGPAAPRPWRLVTRPALLASFALGACVLASQVATFTFVGLRLAGAPFRFTTF GIGAIYAVFLVAVVVTPLAGRMAGRRGPRELALGAAALAVAGALLTLSGQITVILLGLALGSTAVFVEQACANAFVSQAA PAARSTAIGLYLSCYYLGGSLGSLLPIPAWHRWGWAGCIAFVVAAQLLVAVLAARFWRAPRAADTPAAIAHAGPARRGSR ATARDFPVARFAPRSIESAVPGSNARDTHAMREAPPRARPFTSEKSTVTMPSSDSCPPAPTGDLSHRTR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily [H]
Homologues:
Organism=Escherichia coli, GI1787880, Length=374, Percent_Identity=28.3422459893048, Blast_Score=125, Evalue=9e-30,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 - InterPro: IPR005829 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 48210; Mature: 48078
Theoretical pI: Translated: 11.65; Mature: 11.65
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDKTTTRAAFFLCGFAAFLNLYSTQGILRELAAAFAVSAERAGQGVSATTLAVAIIAPF CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH AGTLSARFARRRVIAWAAIAVALPALGCAHADGFGAFLAARFAAGALVPFIFAISIAYIG HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH ELFGPAAATEVGALFVAGTTLGGFAGRFVTNALTALLGWRHALDLVALLCLAAGLAIHAW HHHCCHHHHHHHHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LPAAAPPPAPGPAAPRPWRLVTRPALLASFALGACVLASQVATFTFVGLRLAGAPFRFTT CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH FGIGAIYAVFLVAVVVTPLAGRMAGRRGPRELALGAAALAVAGALLTLSGQITVILLGLA HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH LGSTAVFVEQACANAFVSQAAPAARSTAIGLYLSCYYLGGSLGSLLPIPAWHRWGWAGCI HCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCHHHHHH AFVVAAQLLVAVLAARFWRAPRAADTPAAIAHAGPARRGSRATARDFPVARFAPRSIESA HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCHHCCCCHHCCCHHHHHC VPGSNARDTHAMREAPPRARPFTSEKSTVTMPSSDSCPPAPTGDLSHRTR CCCCCCCHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure SDKTTTRAAFFLCGFAAFLNLYSTQGILRELAAAFAVSAERAGQGVSATTLAVAIIAPF CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH AGTLSARFARRRVIAWAAIAVALPALGCAHADGFGAFLAARFAAGALVPFIFAISIAYIG HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH ELFGPAAATEVGALFVAGTTLGGFAGRFVTNALTALLGWRHALDLVALLCLAAGLAIHAW HHHCCHHHHHHHHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LPAAAPPPAPGPAAPRPWRLVTRPALLASFALGACVLASQVATFTFVGLRLAGAPFRFTT CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH FGIGAIYAVFLVAVVVTPLAGRMAGRRGPRELALGAAALAVAGALLTLSGQITVILLGLA HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH LGSTAVFVEQACANAFVSQAAPAARSTAIGLYLSCYYLGGSLGSLLPIPAWHRWGWAGCI HCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCHHHHHH AFVVAAQLLVAVLAARFWRAPRAADTPAAIAHAGPARRGSRATARDFPVARFAPRSIESA HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCHHCCCCHHCCCHHHHHC VPGSNARDTHAMREAPPRARPFTSEKSTVTMPSSDSCPPAPTGDLSHRTR CCCCCCCHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9097039; 9278503 [H]