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The map label for this gene is sigW [H]

Identifier: 238025244

GI number: 238025244

Start: 2388310

End: 2389053

Strand: Direct

Name: sigW [H]

Synonym: bglu_2g19160

Alternate gene names: 238025244

Gene position: 2388310-2389053 (Clockwise)

Preceding gene: 238025243

Following gene: 238025245

Centisome position: 84.47

GC content: 76.21

Gene sequence:

>744_bases
ATGCCCGCGCCCCCGGCCCGGCCCCGCTCGTCCACCGCCCGGCAGGCGCGTGACGGCGCGGCCGGGCCGGGCGCCCACGC
CGTCCCGCATGGAATCCCGACCCGTGAAGCCAGTCCGGCGCGCGCAACGGCGCGCCCCAACGCCCCCGTGGCCGCGCGAG
CGGCCGCCGAGCCGGAAGTCCGCCACGTGAGCGAACGCGACCCCGACGCGGAACTGCTCGCGCGCGTGGGCGCACGCGAT
CCCGGCGCCGTGCGTGCGCTGGTCGCGCGCAAGCTGCCGCGGCTGCTCGCGCTCGCCACGCGGCTGCTCGGCGACCGCAT
GGAAGCCGAGGACGTCGCGCAGGAGGCGTTCATCCGGATCTGGAAACAGGCACCGCGCTGGAAGACGGGCGAGGCGCGCT
TCGACACCTGGCTGCATCGCGTCGCGCTGAACCTCTGCTACGACCGGCTGCGCGGCCGGCGCGAGGAACCGGCCGACGCG
CTGCCCGACGAGCCGGATCCGCAGCCGCGCGCCGACGCGCGACTGGAGACGCGGGAGCGCGACGCGCGCGTGCGCGACGC
GCTGGCGGCGCTGCCGCCCCGGCAGCGCGAGGCGCTCGTGCTCCATTACTATCAGGAGTTGTCGAACATCGAGGCGGCCG
GCCTGATGGGCATCACGGTGGACGCGCTGGAGAGCCTGCTCTCGCGCGCCCGGCGCAATCTGCGCGCGCAACTGGCCGCC
AGCGGCCGCAGCGAGGAAATCTGA

Upstream 100 bases:

>100_bases
ACCGGCCGCGGTCGTCGTATATTGATCGGGGGCGACGGGCGCCCAGGCCTCGCCGATGCCTGCCCGCCGCCCGTTCGTGA
TGAACGGAACCACCGCCGCC

Downstream 100 bases:

>100_bases
TGACACCCGAACGATTCCGCAGCATCGTCGAGGCCTACGGCGCCGACTCGCGCCGCTGGCCCGACGCCGAACGCGACGCC
GCGCGCGCCTGGGCCGGCAC

Product: RNA polymerase sigma-70 factor

Products: NA

Alternate protein names: Sigma-W factor [H]

Number of amino acids: Translated: 247; Mature: 246

Protein sequence:

>247_residues
MPAPPARPRSSTARQARDGAAGPGAHAVPHGIPTREASPARATARPNAPVAARAAAEPEVRHVSERDPDAELLARVGARD
PGAVRALVARKLPRLLALATRLLGDRMEAEDVAQEAFIRIWKQAPRWKTGEARFDTWLHRVALNLCYDRLRGRREEPADA
LPDEPDPQPRADARLETRERDARVRDALAALPPRQREALVLHYYQELSNIEAAGLMGITVDALESLLSRARRNLRAQLAA
SGRSEEI

Sequences:

>Translated_247_residues
MPAPPARPRSSTARQARDGAAGPGAHAVPHGIPTREASPARATARPNAPVAARAAAEPEVRHVSERDPDAELLARVGARD
PGAVRALVARKLPRLLALATRLLGDRMEAEDVAQEAFIRIWKQAPRWKTGEARFDTWLHRVALNLCYDRLRGRREEPADA
LPDEPDPQPRADARLETRERDARVRDALAALPPRQREALVLHYYQELSNIEAAGLMGITVDALESLLSRARRNLRAQLAA
SGRSEEI
>Mature_246_residues
PAPPARPRSSTARQARDGAAGPGAHAVPHGIPTREASPARATARPNAPVAARAAAEPEVRHVSERDPDAELLARVGARDP
GAVRALVARKLPRLLALATRLLGDRMEAEDVAQEAFIRIWKQAPRWKTGEARFDTWLHRVALNLCYDRLRGRREEPADAL
PDEPDPQPRADARLETRERDARVRDALAALPPRQREALVLHYYQELSNIEAAGLMGITVDALESLLSRARRNLRAQLAAS
GRSEEI

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. Sigma-W controls genes involved in transport processes and detoxification [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014294
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 27161; Mature: 27030

Theoretical pI: Translated: 10.63; Mature: 10.63

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAPPARPRSSTARQARDGAAGPGAHAVPHGIPTREASPARATARPNAPVAARAAAEPEV
CCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCHH
RHVSERDPDAELLARVGARDPGAVRALVARKLPRLLALATRLLGDRMEAEDVAQEAFIRI
HHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
WKQAPRWKTGEARFDTWLHRVALNLCYDRLRGRREEPADALPDEPDPQPRADARLETRER
HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
DARVRDALAALPPRQREALVLHYYQELSNIEAAGLMGITVDALESLLSRARRNLRAQLAA
HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SGRSEEI
CCCCCCC
>Mature Secondary Structure 
PAPPARPRSSTARQARDGAAGPGAHAVPHGIPTREASPARATARPNAPVAARAAAEPEV
CCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCHH
RHVSERDPDAELLARVGARDPGAVRALVARKLPRLLALATRLLGDRMEAEDVAQEAFIRI
HHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
WKQAPRWKTGEARFDTWLHRVALNLCYDRLRGRREEPADALPDEPDPQPRADARLETRER
HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
DARVRDALAALPPRQREALVLHYYQELSNIEAAGLMGITVDALESLLSRARRNLRAQLAA
HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SGRSEEI
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9274029; 9384377; 12207695 [H]