| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
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The map label for this gene is mocR [H]
Identifier: 238025238
GI number: 238025238
Start: 2383011
End: 2384489
Strand: Direct
Name: mocR [H]
Synonym: bglu_2g19100
Alternate gene names: 238025238
Gene position: 2383011-2384489 (Clockwise)
Preceding gene: 238025237
Following gene: 238025241
Centisome position: 84.28
GC content: 72.75
Gene sequence:
>1479_bases ATGACCCACCGCGACCGCGACCTGAAGCTCGACATCGACCGGCGCCTGCAGTTGCCCATCTACCTGCAGATCTGCGAGCG CTTCAAGCTCGCGATCCGCGCCGGGCACCTGCGCCCCGGCGATCGCGTGCCCGCCGTGCGCGGCCTCGCCACCGAGTTGA ACACGGCGCGCGGCACGATCGAAACGGCCTACCGGATTCTCATCGACGAAGGCTATCTGCAGGTGCGCGGCGCGGCCGGC ACCTATGTCTCGCCGTCGCTGCCGCAGGCGGCGCTGCGCGGCGCGGCGCGAGCTTCGCGCGCCAGCGCCGCCGCGCCGAA GGACAAGCCGGCCGCAGCCGATCCCGGCCGCCCGCCCGGCGAGCGCGGCAGCGAACCGCTGCCGCTGCAGCCGGGGCTGC CCGCACTCGACGCGTTCCCGCGCAAGGTCTGGAGCCGGCTGGTCGCCTACCGCCTGCGGCGCGCCGAAACGGCCTCGCTC GCCTATCCCGATCCGCGCGGCTATCTGCTGCTGCGCGAGAAGATCGCCACCTACCTCGGACTGTCGCGCGGCGTGGCATG CACGCCGGACCAGGTATTCGTGACGGGCGGCTATCGCGCCACGCTCGAACTGGTGCTGCGTGCGCTCGCCGCGCCGGGCG AGCGCATGTGGTTCGAGGATCCCGGCTATCTGCTCGCGCGGCGCTTTCTGGTCGATGCGGGCATGGAACTGGTGCCGGTG CCGGTGGATGCCGAGGGGCTGATGGTGGAACGCGGCGCGGCACTCGCCCCCGAGGCGCGCTTCGCGGTGGTGACGCCCTC GCACCAGAGCCCGCTCGGCGTCACGCTCTCGCTGTCACGCCGCATGGCGCTGCTGGACTGGGCCTCGCGCGCCGGCAGCT GGGTGATCGAGGACGACTACGATAGCGAGTTCCGCTACGCGGGCCGGCCGCTGCCCGCGCTGAAGAGCCTGGACCGGCAC GACCGCGTGATCTATTGCGGCACCTTCAGCAAGGTAATGGTGCCGGGCCTGCGGCTCGCCTACGTGGTGGTGCCCGAGCG CGCCACCGCGCGCCTCCTGCGGATCTGCCAGACCATGAACGCCGCCTCGCCGTACCTGCTGCAGGCCGGCGTGGCCGACT TCATCGCGCAGGGCCATTTCGCGCGGCACCTGAAACGGATGCGCGCGCTGTATGCGGAGCGCCGCGGGCTGATGGTGGAG GCGCTGCGCGACGCGTTCGGCGCGCGGCTGCGCATCGACGTGCCGCCGGGCGGCATGCATCTCGCGATCGGCTTCGAAGG CGCTGCGGCGATCGACGATCTCGACTTCGCCGCGCGCGCGCGCGCGGCGGGGCTCGGCGTCAGCGCGCTGTCGGAGTGGT ATGCGAACAGCCGCGCGAAGCAGACGCGGCGCGGTGCCGTGCTCGGCTTCGCCAACGTGATCGACCGCGAGGCCGCGCAG CGCTACGCGCGGGCGCTGCGGCAGGTCTACGACGCCTAG
Upstream 100 bases:
>100_bases GAACGTCCGGCCCGGCGCCGGCGCCACGTTCCTCATGCGACAATGACGGCTCACTGATTTCACACGCTTCACCACACCCG AGCAGTCCAACAGTCCCCCG
Downstream 100 bases:
>100_bases CCGGGGCCGACACGGTTGCGCATGCGCGGGCGGGCGGACCGCCGGCGAAACCGGGCCGGGCGCGGCTCGAAGCCGACGCC CCGCGCTGCGCAGCGGCGGC
Product: GntR family transcriptional regulator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 492; Mature: 491
Protein sequence:
>492_residues MTHRDRDLKLDIDRRLQLPIYLQICERFKLAIRAGHLRPGDRVPAVRGLATELNTARGTIETAYRILIDEGYLQVRGAAG TYVSPSLPQAALRGAARASRASAAAPKDKPAAADPGRPPGERGSEPLPLQPGLPALDAFPRKVWSRLVAYRLRRAETASL AYPDPRGYLLLREKIATYLGLSRGVACTPDQVFVTGGYRATLELVLRALAAPGERMWFEDPGYLLARRFLVDAGMELVPV PVDAEGLMVERGAALAPEARFAVVTPSHQSPLGVTLSLSRRMALLDWASRAGSWVIEDDYDSEFRYAGRPLPALKSLDRH DRVIYCGTFSKVMVPGLRLAYVVVPERATARLLRICQTMNAASPYLLQAGVADFIAQGHFARHLKRMRALYAERRGLMVE ALRDAFGARLRIDVPPGGMHLAIGFEGAAAIDDLDFAARARAAGLGVSALSEWYANSRAKQTRRGAVLGFANVIDREAAQ RYARALRQVYDA
Sequences:
>Translated_492_residues MTHRDRDLKLDIDRRLQLPIYLQICERFKLAIRAGHLRPGDRVPAVRGLATELNTARGTIETAYRILIDEGYLQVRGAAG TYVSPSLPQAALRGAARASRASAAAPKDKPAAADPGRPPGERGSEPLPLQPGLPALDAFPRKVWSRLVAYRLRRAETASL AYPDPRGYLLLREKIATYLGLSRGVACTPDQVFVTGGYRATLELVLRALAAPGERMWFEDPGYLLARRFLVDAGMELVPV PVDAEGLMVERGAALAPEARFAVVTPSHQSPLGVTLSLSRRMALLDWASRAGSWVIEDDYDSEFRYAGRPLPALKSLDRH DRVIYCGTFSKVMVPGLRLAYVVVPERATARLLRICQTMNAASPYLLQAGVADFIAQGHFARHLKRMRALYAERRGLMVE ALRDAFGARLRIDVPPGGMHLAIGFEGAAAIDDLDFAARARAAGLGVSALSEWYANSRAKQTRRGAVLGFANVIDREAAQ RYARALRQVYDA >Mature_491_residues THRDRDLKLDIDRRLQLPIYLQICERFKLAIRAGHLRPGDRVPAVRGLATELNTARGTIETAYRILIDEGYLQVRGAAGT YVSPSLPQAALRGAARASRASAAAPKDKPAAADPGRPPGERGSEPLPLQPGLPALDAFPRKVWSRLVAYRLRRAETASLA YPDPRGYLLLREKIATYLGLSRGVACTPDQVFVTGGYRATLELVLRALAAPGERMWFEDPGYLLARRFLVDAGMELVPVP VDAEGLMVERGAALAPEARFAVVTPSHQSPLGVTLSLSRRMALLDWASRAGSWVIEDDYDSEFRYAGRPLPALKSLDRHD RVIYCGTFSKVMVPGLRLAYVVVPERATARLLRICQTMNAASPYLLQAGVADFIAQGHFARHLKRMRALYAERRGLMVEA LRDAFGARLRIDVPPGGMHLAIGFEGAAAIDDLDFAARARAAGLGVSALSEWYANSRAKQTRRGAVLGFANVIDREAAQR YARALRQVYDA
Specific function: Could play a regulatory role in the transcription of the moc genes for rhizopine catabolism. Could also have an aminotransferase activity [H]
COG id: COG1167
COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]
Homologues:
Organism=Homo sapiens, GI7705897, Length=284, Percent_Identity=22.5352112676056, Blast_Score=75, Evalue=1e-13, Organism=Homo sapiens, GI33469970, Length=284, Percent_Identity=22.5352112676056, Blast_Score=75, Evalue=1e-13, Organism=Escherichia coli, GI1787710, Length=429, Percent_Identity=28.2051282051282, Blast_Score=145, Evalue=6e-36, Organism=Escherichia coli, GI1790797, Length=446, Percent_Identity=26.9058295964126, Blast_Score=135, Evalue=4e-33,
Paralogues:
None
Copy number: 10-20 Molecules/Cell [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004839 - InterPro: IPR000524 - InterPro: IPR015424 - InterPro: IPR015421 - InterPro: IPR011991 [H]
Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]
EC number: NA
Molecular weight: Translated: 53959; Mature: 53828
Theoretical pI: Translated: 10.28; Mature: 10.28
Prosite motif: PS50949 HTH_GNTR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTHRDRDLKLDIDRRLQLPIYLQICERFKLAIRAGHLRPGDRVPAVRGLATELNTARGTI CCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCHH ETAYRILIDEGYLQVRGAAGTYVSPSLPQAALRGAARASRASAAAPKDKPAAADPGRPPG HHHHHHEEECCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC ERGSEPLPLQPGLPALDAFPRKVWSRLVAYRLRRAETASLAYPDPRGYLLLREKIATYLG CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEHHHHHHHHHHH LSRGVACTPDQVFVTGGYRATLELVLRALAAPGERMWFEDPGYLLARRFLVDAGMELVPV HCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCEEEEC PVDAEGLMVERGAALAPEARFAVVTPSHQSPLGVTLSLSRRMALLDWASRAGSWVIEDDY CCCCCCEEEECCCCCCCCCEEEEECCCCCCCCEEEEEHHHHHHHHHHHHHCCCEEEECCC DSEFRYAGRPLPALKSLDRHDRVIYCGTFSKVMVPGLRLAYVVVPERATARLLRICQTMN CCCHHHCCCCCHHHHCCCCCCCEEEECCHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHC AASPYLLQAGVADFIAQGHFARHLKRMRALYAERRGLMVEALRDAFGARLRIDVPPGGMH CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCEEEEECCCCCEE LAIGFEGAAAIDDLDFAARARAAGLGVSALSEWYANSRAKQTRRGAVLGFANVIDREAAQ EEEECCCCCHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH RYARALRQVYDA HHHHHHHHHHCC >Mature Secondary Structure THRDRDLKLDIDRRLQLPIYLQICERFKLAIRAGHLRPGDRVPAVRGLATELNTARGTI CCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCHH ETAYRILIDEGYLQVRGAAGTYVSPSLPQAALRGAARASRASAAAPKDKPAAADPGRPPG HHHHHHEEECCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC ERGSEPLPLQPGLPALDAFPRKVWSRLVAYRLRRAETASLAYPDPRGYLLLREKIATYLG CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEHHHHHHHHHHH LSRGVACTPDQVFVTGGYRATLELVLRALAAPGERMWFEDPGYLLARRFLVDAGMELVPV HCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCEEEEC PVDAEGLMVERGAALAPEARFAVVTPSHQSPLGVTLSLSRRMALLDWASRAGSWVIEDDY CCCCCCEEEECCCCCCCCCEEEEECCCCCCCCEEEEEHHHHHHHHHHHHHCCCEEEECCC DSEFRYAGRPLPALKSLDRHDRVIYCGTFSKVMVPGLRLAYVVVPERATARLLRICQTMN CCCHHHCCCCCHHHHCCCCCCCEEEECCHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHC AASPYLLQAGVADFIAQGHFARHLKRMRALYAERRGLMVEALRDAFGARLRIDVPPGGMH CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCEEEEECCCCCEE LAIGFEGAAAIDDLDFAARARAAGLGVSALSEWYANSRAKQTRRGAVLGFANVIDREAAQ EEEECCCCCHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH RYARALRQVYDA HHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7845353 [H]