| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
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The map label for this gene is 238025099
Identifier: 238025099
GI number: 238025099
Start: 2200146
End: 2201312
Strand: Direct
Name: 238025099
Synonym: bglu_2g17560
Alternate gene names: NA
Gene position: 2200146-2201312 (Clockwise)
Preceding gene: 238025098
Following gene: 238025102
Centisome position: 77.82
GC content: 69.58
Gene sequence:
>1167_bases ATGCTGACCTCGCATCGCGAGCATCTGGAAGTCGCCTGGCCCGACGGCAGCACGAGCCGCTACCACTGGGTATGGCTGCG CCAGGCGTGCCAATGCGCCAGCTGCTTCAACCGCCATTGCCGCCAGCGGCACTTCGATCCGGGCGTGGTGCCGGCCGACC TGCGGCCGGCCGCCCTCAGCGCCGACGCCACGGGCCTGCGCATCGTCTGGCCGGATGGCCATCCGAGCCATTACGGCTTC GACCGCCTGCGCGACGAGGACTACGACCAGCCACGACGCGCCGCACCGGCCGACGCCCGCCCCGCCTGGCGCCGCTGGCC GGACGGCGCCCCGCCGGCGCTGCGCTTCGAGCTCGCCGCGGCGCTCGACGACGGCGCGCTGCTGCATCGGGCGCTGCAGC ATCTGTTCGAATACGGGCTGGTGGTGCTGAAGGCGGAGCCGACGCGCACCGTCGAGTTCGGGGCGGTATGCCGGCAGCTG GCGGGGTTTCTCGATCGCTCCTACTTCGGGGAGTTCTTCGATCTGGAAGTGAAGGCCGACGAGGAGACCGACAGCGTGTC GTTCAGCACCAAGGCGCTGCCGCTGCACACCGACATCCCGTACTGCTCGCCGCCGCCCGACTACCAGTTCCTGTATGGCC TCGACGTGAGTTCGCAATGCGCGCGAGACGGCATCGGCAGCACGCGTTTCGTGGACGGCTTCACGATCGCCTGCGAGCTG CGCGAGGCCCAGCCCGATGCGTTCGCGCTGCTCGCCCGCACGCCGGTGCTCTATCGCGCCGACTATCCACAGGCACGCAA GCGCTACGAGCATCGCACGCCGATCGTGCGGCTCGCGCCGGACGGCTCGATCGAACGCCTGATCAACAATCCGACGAAGA TGTTCTTCGACGGCATCGGCTTCGACGAGATGCTGCCCCTCTTCCGTGCCTACCAGTCGCTCAAGTCGCGGCTGGCGGCG ACCGAACGGTCGTACCTGCATGCGTGGTCGCAGGGCGACATGGTGGTCTGGGACAATCGCCGGATCTTCCATGGCCGCGG CGACTTCGGTGGGTCCGGCTTCACGCGCACGCTGCGCGGCGGGTATTTCCGCGAAGGCGAACTGCTGGCGCGCGCACGCT TCCTGGCGTCGCGCGCGGCCGACCGGCGCGCTGCGGTCGCTTCGTGA
Upstream 100 bases:
>100_bases AAGATCCGCTTCATGAAGGCCGGCTGGCTGACGCAGGGCCTGTTCATGGCGGACAAGGCATGAGCGCGCTCGCTTGGCAG TCCTACTGGAGATCCCTCAC
Downstream 100 bases:
>100_bases GCGCCGCGCCCGGCCTGCCTCAGGCGCGATACGCGAGGCACGCGGCACCGGCCACGACCGCCGCGGCAGCCGCGATCCGC TGCCCGGTCGGGCGCTCGCC
Product: putative gamma-butyrobetaine,2-oxoglutarate dioxygenase
Products: NA
Alternate protein names: Gamma-butyrobetaine hydroxylase; Gamma-BBH; Gamma-butyrobetaine,2-oxoglutarate dioxygenase [H]
Number of amino acids: Translated: 388; Mature: 388
Protein sequence:
>388_residues MLTSHREHLEVAWPDGSTSRYHWVWLRQACQCASCFNRHCRQRHFDPGVVPADLRPAALSADATGLRIVWPDGHPSHYGF DRLRDEDYDQPRRAAPADARPAWRRWPDGAPPALRFELAAALDDGALLHRALQHLFEYGLVVLKAEPTRTVEFGAVCRQL AGFLDRSYFGEFFDLEVKADEETDSVSFSTKALPLHTDIPYCSPPPDYQFLYGLDVSSQCARDGIGSTRFVDGFTIACEL REAQPDAFALLARTPVLYRADYPQARKRYEHRTPIVRLAPDGSIERLINNPTKMFFDGIGFDEMLPLFRAYQSLKSRLAA TERSYLHAWSQGDMVVWDNRRIFHGRGDFGGSGFTRTLRGGYFREGELLARARFLASRAADRRAAVAS
Sequences:
>Translated_388_residues MLTSHREHLEVAWPDGSTSRYHWVWLRQACQCASCFNRHCRQRHFDPGVVPADLRPAALSADATGLRIVWPDGHPSHYGF DRLRDEDYDQPRRAAPADARPAWRRWPDGAPPALRFELAAALDDGALLHRALQHLFEYGLVVLKAEPTRTVEFGAVCRQL AGFLDRSYFGEFFDLEVKADEETDSVSFSTKALPLHTDIPYCSPPPDYQFLYGLDVSSQCARDGIGSTRFVDGFTIACEL REAQPDAFALLARTPVLYRADYPQARKRYEHRTPIVRLAPDGSIERLINNPTKMFFDGIGFDEMLPLFRAYQSLKSRLAA TERSYLHAWSQGDMVVWDNRRIFHGRGDFGGSGFTRTLRGGYFREGELLARARFLASRAADRRAAVAS >Mature_388_residues MLTSHREHLEVAWPDGSTSRYHWVWLRQACQCASCFNRHCRQRHFDPGVVPADLRPAALSADATGLRIVWPDGHPSHYGF DRLRDEDYDQPRRAAPADARPAWRRWPDGAPPALRFELAAALDDGALLHRALQHLFEYGLVVLKAEPTRTVEFGAVCRQL AGFLDRSYFGEFFDLEVKADEETDSVSFSTKALPLHTDIPYCSPPPDYQFLYGLDVSSQCARDGIGSTRFVDGFTIACEL REAQPDAFALLARTPVLYRADYPQARKRYEHRTPIVRLAPDGSIERLINNPTKMFFDGIGFDEMLPLFRAYQSLKSRLAA TERSYLHAWSQGDMVVWDNRRIFHGRGDFGGSGFTRTLRGGYFREGELLARARFLASRAADRRAAVAS
Specific function: Catalyzes the formation of L-carnitine from gamma- butyrobetaine [H]
COG id: COG2175
COG function: function code Q; Probable taurine catabolism dioxygenase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the gamma-BBH/TMLD family [H]
Homologues:
Organism=Homo sapiens, GI4502369, Length=383, Percent_Identity=25.5874673629243, Blast_Score=133, Evalue=2e-31, Organism=Homo sapiens, GI8922625, Length=381, Percent_Identity=24.9343832020997, Blast_Score=120, Evalue=2e-27, Organism=Homo sapiens, GI296317249, Length=280, Percent_Identity=24.2857142857143, Blast_Score=94, Evalue=3e-19, Organism=Caenorhabditis elegans, GI17534641, Length=396, Percent_Identity=25.5050505050505, Blast_Score=114, Evalue=9e-26, Organism=Drosophila melanogaster, GI24639015, Length=384, Percent_Identity=27.0833333333333, Blast_Score=122, Evalue=3e-28, Organism=Drosophila melanogaster, GI24648401, Length=357, Percent_Identity=25.7703081232493, Blast_Score=120, Evalue=2e-27, Organism=Drosophila melanogaster, GI221329931, Length=368, Percent_Identity=27.1739130434783, Blast_Score=120, Evalue=2e-27, Organism=Drosophila melanogaster, GI19922166, Length=389, Percent_Identity=27.2493573264781, Blast_Score=110, Evalue=2e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012775 - InterPro: IPR010376 - InterPro: IPR003819 [H]
Pfam domain/function: PF06155 DUF971; PF02668 TauD [H]
EC number: =1.14.11.1 [H]
Molecular weight: Translated: 43988; Mature: 43988
Theoretical pI: Translated: 7.58; Mature: 7.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLTSHREHLEVAWPDGSTSRYHWVWLRQACQCASCFNRHCRQRHFDPGVVPADLRPAALS CCCCCCCCEEEECCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC ADATGLRIVWPDGHPSHYGFDRLRDEDYDQPRRAAPADARPAWRRWPDGAPPALRFELAA CCCCCEEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCHHHCCCCCCCCHHEEEEEH ALDDGALLHRALQHLFEYGLVVLKAEPTRTVEFGAVCRQLAGFLDRSYFGEFFDLEVKAD HCCCHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECC EETDSVSFSTKALPLHTDIPYCSPPPDYQFLYGLDVSSQCARDGIGSTRFVDGFTIACEL CCCCCEEEEECEEEEECCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCEEECCEEEEEEE REAQPDAFALLARTPVLYRADYPQARKRYEHRTPIVRLAPDGSIERLINNPTKMFFDGIG CCCCCCCEEHHHCCCEEEECCCHHHHHHHHHCCCEEEECCCCHHHHHHCCCHHHHCCCCC FDEMLPLFRAYQSLKSRLAATERSYLHAWSQGDMVVWDNRRIFHGRGDFGGSGFTRTLRG HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEECCCCCCCCCCHHHHCC GYFREGELLARARFLASRAADRRAAVAS CCCCCHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MLTSHREHLEVAWPDGSTSRYHWVWLRQACQCASCFNRHCRQRHFDPGVVPADLRPAALS CCCCCCCCEEEECCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC ADATGLRIVWPDGHPSHYGFDRLRDEDYDQPRRAAPADARPAWRRWPDGAPPALRFELAA CCCCCEEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCHHHCCCCCCCCHHEEEEEH ALDDGALLHRALQHLFEYGLVVLKAEPTRTVEFGAVCRQLAGFLDRSYFGEFFDLEVKAD HCCCHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECC EETDSVSFSTKALPLHTDIPYCSPPPDYQFLYGLDVSSQCARDGIGSTRFVDGFTIACEL CCCCCEEEEECEEEEECCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCEEECCEEEEEEE REAQPDAFALLARTPVLYRADYPQARKRYEHRTPIVRLAPDGSIERLINNPTKMFFDGIG CCCCCCCEEHHHCCCEEEECCCHHHHHHHHHCCCEEEECCCCHHHHHHCCCHHHHCCCCC FDEMLPLFRAYQSLKSRLAATERSYLHAWSQGDMVVWDNRRIFHGRGDFGGSGFTRTLRG HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEECCCCCCCCCCHHHHCC GYFREGELLARARFLASRAADRRAAVAS CCCCCHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8504802 [H]