BacMap

Definition	Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence.
Accession	NC_012721
Length	2,827,333

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The map label for this gene is yxnA [H]

Identifier: 238025070

GI number: 238025070

Start: 2163880

End: 2164785

Strand: Direct

Name: yxnA [H]

Synonym: bglu_2g17260

Alternate gene names: 238025070

Gene position: 2163880-2164785 (Clockwise)

Preceding gene: 238025067

Following gene: 238025071

Centisome position: 76.53

GC content: 71.3

Gene sequence:

>906_bases
ATGAAGGATTTTTCCAACAAGGTCGCCGCCATTACCGGCGCAGGCTCCGGCATGGGCCGCAGCCTTGCCGTGGAGCTTGC
GCGCCGCGGCTGCCACCTCGCCTTGAGCGACATCAACGAGATCGGCCTGGCACAGACCGTCGCGCTGTGCAGCGCGCACG
GCGTGCGCGTGAGTTCGCAGCGGCTCGACGTGGCCTCGCGCGAGGCCGTGTTCGGCTGGGCCAAGGCCACGCGCGAGGCG
CACGGCCGCGTGAATCTGGTGTTCAACAACGCGGGCGTGTCGCTCGCGGCGCCGGCCGAGCACGTGCGCATCGAGGATTT
CGCGTGGATCATGGACATCAACTTCTGGGGTGTCGTGCACGGCACGCAGGCGTTCCTGCCCTACCTGCGCGAATCGGGAG
ACGGCCACGTGATCAACACCTCGAGCCTGTTCGGGCTCGTCTCGATGCCCACCCAGAGCACCTACAACGCGAGCAAGTTC
GCCGTGCGCGGCTTCACCGAGGCGCTGCGCATGGAGCTGGAGCTGGAACGCGCGCCCGTCAGCGCGACCTGCGTGCATCC
GGGCGGCGTGGCCACCAACATCGCCACGGCCTCGCGCATCGACGAGCGGATCGCCGCGCTGACGGGCCAGAGCCCCGACG
CGCACCGGCGCGCCGCCAACAAGCTGATCGACGCGACCAGCGCCGACGAGGCCGCGCGGCAGATCCTCGCCGGCGTGGCG
CGCAACGCGCGGCGCGTGCTGATCGGCGCCGACGCGCGCCGGCTCGACCGGATCGCGCGGCTGTTCGGCGCCGCCTACCA
GGTGTTCGTGCTGCGCTTCGTGCGCAGCTCGCGCGAACGCAACCTGCGGCGGCACGGCGCCGGCGCCGCCGCGAACCACT
CCGCCGAGACGAGGGACGCGGCATGA

Upstream 100 bases:

>100_bases
TCGCTATTTGACATCAAACAATGGCATCATTAAATTGGTGACACTCAACACCACATTTAATCCGTGTTTCGGCCGGGCGG
CAAGCCCGCAAGGAGCGTCG

Downstream 100 bases:

>100_bases
GCACCACTCACCTGCCGCGCGAGGCGGCCCACCGCGCCGCGTCGCGCCCGCACGGGCGCGACGCCGATCCCGCCGAGCGC
GCGAGCGGCACCGAACCGGC

Product: short chain dehydrogenase/reductase family oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MKDFSNKVAAITGAGSGMGRSLAVELARRGCHLALSDINEIGLAQTVALCSAHGVRVSSQRLDVASREAVFGWAKATREA
HGRVNLVFNNAGVSLAAPAEHVRIEDFAWIMDINFWGVVHGTQAFLPYLRESGDGHVINTSSLFGLVSMPTQSTYNASKF
AVRGFTEALRMELELERAPVSATCVHPGGVATNIATASRIDERIAALTGQSPDAHRRAANKLIDATSADEAARQILAGVA
RNARRVLIGADARRLDRIARLFGAAYQVFVLRFVRSSRERNLRRHGAGAAANHSAETRDAA

Sequences:

>Translated_301_residues
MKDFSNKVAAITGAGSGMGRSLAVELARRGCHLALSDINEIGLAQTVALCSAHGVRVSSQRLDVASREAVFGWAKATREA
HGRVNLVFNNAGVSLAAPAEHVRIEDFAWIMDINFWGVVHGTQAFLPYLRESGDGHVINTSSLFGLVSMPTQSTYNASKF
AVRGFTEALRMELELERAPVSATCVHPGGVATNIATASRIDERIAALTGQSPDAHRRAANKLIDATSADEAARQILAGVA
RNARRVLIGADARRLDRIARLFGAAYQVFVLRFVRSSRERNLRRHGAGAAANHSAETRDAA
>Mature_301_residues
MKDFSNKVAAITGAGSGMGRSLAVELARRGCHLALSDINEIGLAQTVALCSAHGVRVSSQRLDVASREAVFGWAKATREA
HGRVNLVFNNAGVSLAAPAEHVRIEDFAWIMDINFWGVVHGTQAFLPYLRESGDGHVINTSSLFGLVSMPTQSTYNASKF
AVRGFTEALRMELELERAPVSATCVHPGGVATNIATASRIDERIAALTGQSPDAHRRAANKLIDATSADEAARQILAGVA
RNARRVLIGADARRLDRIARLFGAAYQVFVLRFVRSSRERNLRRHGAGAAANHSAETRDAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI210032110, Length=262, Percent_Identity=26.3358778625954, Blast_Score=108, Evalue=6e-24,
Organism=Homo sapiens, GI142976729, Length=192, Percent_Identity=34.375, Blast_Score=107, Evalue=2e-23,
Organism=Homo sapiens, GI20149619, Length=254, Percent_Identity=28.3464566929134, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI7706318, Length=254, Percent_Identity=27.5590551181102, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI7657478, Length=245, Percent_Identity=28.1632653061224, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI25282469, Length=258, Percent_Identity=32.1705426356589, Blast_Score=93, Evalue=2e-19,
Organism=Homo sapiens, GI40548397, Length=230, Percent_Identity=29.5652173913043, Blast_Score=92, Evalue=7e-19,
Organism=Homo sapiens, GI214010158, Length=230, Percent_Identity=29.5652173913043, Blast_Score=92, Evalue=7e-19,
Organism=Homo sapiens, GI214010156, Length=230, Percent_Identity=29.5652173913043, Blast_Score=92, Evalue=7e-19,
Organism=Homo sapiens, GI22758144, Length=230, Percent_Identity=29.5652173913043, Blast_Score=92, Evalue=7e-19,
Organism=Homo sapiens, GI40807363, Length=195, Percent_Identity=32.3076923076923, Blast_Score=92, Evalue=7e-19,
Organism=Homo sapiens, GI310128830, Length=206, Percent_Identity=32.0388349514563, Blast_Score=92, Evalue=8e-19,
Organism=Homo sapiens, GI310115468, Length=206, Percent_Identity=32.0388349514563, Blast_Score=92, Evalue=8e-19,
Organism=Homo sapiens, GI150247226, Length=258, Percent_Identity=30.6201550387597, Blast_Score=89, Evalue=4e-18,
Organism=Homo sapiens, GI4503817, Length=250, Percent_Identity=25.6, Blast_Score=86, Evalue=5e-17,
Organism=Homo sapiens, GI109715829, Length=208, Percent_Identity=29.8076923076923, Blast_Score=83, Evalue=4e-16,
Organism=Homo sapiens, GI44680136, Length=226, Percent_Identity=29.646017699115, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI44680133, Length=226, Percent_Identity=29.646017699115, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI17738292, Length=226, Percent_Identity=29.646017699115, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI223718074, Length=168, Percent_Identity=34.5238095238095, Blast_Score=82, Evalue=5e-16,
Organism=Homo sapiens, GI22507405, Length=217, Percent_Identity=29.9539170506912, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI4504503, Length=215, Percent_Identity=31.1627906976744, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI157739938, Length=175, Percent_Identity=32.5714285714286, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI32455239, Length=242, Percent_Identity=29.7520661157025, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI5031765, Length=242, Percent_Identity=29.7520661157025, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI31542939, Length=203, Percent_Identity=30.0492610837438, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI32483357, Length=203, Percent_Identity=28.0788177339901, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI38424085, Length=180, Percent_Identity=35.5555555555556, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI38348362, Length=180, Percent_Identity=35, Blast_Score=73, Evalue=4e-13,
Organism=Homo sapiens, GI19743808, Length=213, Percent_Identity=29.1079812206573, Blast_Score=69, Evalue=7e-12,
Organism=Homo sapiens, GI224922801, Length=165, Percent_Identity=32.7272727272727, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI15277342, Length=219, Percent_Identity=30.1369863013699, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI31543615, Length=205, Percent_Identity=32.6829268292683, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI126723191, Length=186, Percent_Identity=27.9569892473118, Blast_Score=65, Evalue=9e-11,
Organism=Homo sapiens, GI40254992, Length=189, Percent_Identity=28.5714285714286, Blast_Score=65, Evalue=9e-11,
Organism=Escherichia coli, GI87082100, Length=196, Percent_Identity=33.1632653061224, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1786701, Length=196, Percent_Identity=27.5510204081633, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1787335, Length=233, Percent_Identity=27.0386266094421, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1788459, Length=191, Percent_Identity=29.8429319371728, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1789208, Length=201, Percent_Identity=26.865671641791, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI87082160, Length=194, Percent_Identity=27.319587628866, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1787820, Length=185, Percent_Identity=28.1081081081081, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1787905, Length=137, Percent_Identity=27.7372262773723, Blast_Score=62, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI17567345, Length=172, Percent_Identity=31.9767441860465, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI71994600, Length=213, Percent_Identity=33.3333333333333, Blast_Score=94, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI71997402, Length=177, Percent_Identity=36.1581920903955, Blast_Score=92, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI193203115, Length=193, Percent_Identity=30.0518134715026, Blast_Score=91, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI193203117, Length=190, Percent_Identity=30, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI71994604, Length=201, Percent_Identity=33.3333333333333, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17564282, Length=194, Percent_Identity=28.3505154639175, Blast_Score=80, Evalue=9e-16,
Organism=Caenorhabditis elegans, GI17570069, Length=174, Percent_Identity=32.7586206896552, Blast_Score=79, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17568967, Length=187, Percent_Identity=30.4812834224599, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17538486, Length=207, Percent_Identity=28.5024154589372, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI115534660, Length=209, Percent_Identity=29.1866028708134, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI32563809, Length=224, Percent_Identity=25.8928571428571, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17507613, Length=224, Percent_Identity=25.8928571428571, Blast_Score=71, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17562910, Length=225, Percent_Identity=28, Blast_Score=71, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI17551412, Length=201, Percent_Identity=29.8507462686567, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17508895, Length=198, Percent_Identity=27.2727272727273, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI193204405, Length=205, Percent_Identity=30.2439024390244, Blast_Score=69, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17562906, Length=205, Percent_Identity=30.7317073170732, Blast_Score=68, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17562908, Length=202, Percent_Identity=30.1980198019802, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17531453, Length=202, Percent_Identity=29.7029702970297, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17565030, Length=225, Percent_Identity=26.6666666666667, Blast_Score=65, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17559104, Length=211, Percent_Identity=27.4881516587678, Blast_Score=64, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI25147288, Length=199, Percent_Identity=27.6381909547739, Blast_Score=64, Evalue=8e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=198, Percent_Identity=27.7777777777778, Blast_Score=77, Evalue=4e-15,
Organism=Saccharomyces cerevisiae, GI6322067, Length=200, Percent_Identity=27.5, Blast_Score=71, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6320089, Length=194, Percent_Identity=27.8350515463918, Blast_Score=69, Evalue=7e-13,
Organism=Saccharomyces cerevisiae, GI6322861, Length=188, Percent_Identity=27.1276595744681, Blast_Score=68, Evalue=2e-12,
Organism=Drosophila melanogaster, GI21355631, Length=283, Percent_Identity=32.5088339222615, Blast_Score=121, Evalue=5e-28,
Organism=Drosophila melanogaster, GI24649181, Length=284, Percent_Identity=27.112676056338, Blast_Score=111, Evalue=5e-25,
Organism=Drosophila melanogaster, GI24640492, Length=207, Percent_Identity=32.3671497584541, Blast_Score=101, Evalue=8e-22,
Organism=Drosophila melanogaster, GI281364892, Length=173, Percent_Identity=35.2601156069364, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI28571526, Length=207, Percent_Identity=33.3333333333333, Blast_Score=95, Evalue=7e-20,
Organism=Drosophila melanogaster, GI221510726, Length=252, Percent_Identity=30.952380952381, Blast_Score=94, Evalue=1e-19,
Organism=Drosophila melanogaster, GI21358495, Length=247, Percent_Identity=27.1255060728745, Blast_Score=93, Evalue=3e-19,
Organism=Drosophila melanogaster, GI21357041, Length=210, Percent_Identity=32.8571428571429, Blast_Score=92, Evalue=4e-19,
Organism=Drosophila melanogaster, GI24644339, Length=197, Percent_Identity=31.9796954314721, Blast_Score=92, Evalue=5e-19,
Organism=Drosophila melanogaster, GI24581726, Length=207, Percent_Identity=29.951690821256, Blast_Score=84, Evalue=9e-17,
Organism=Drosophila melanogaster, GI23397609, Length=193, Percent_Identity=34.7150259067358, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24643142, Length=228, Percent_Identity=28.9473684210526, Blast_Score=78, Evalue=8e-15,
Organism=Drosophila melanogaster, GI221331218, Length=237, Percent_Identity=27.4261603375527, Blast_Score=76, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24665243, Length=237, Percent_Identity=27.0042194092827, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI281364494, Length=218, Percent_Identity=29.8165137614679, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24580925, Length=196, Percent_Identity=29.0816326530612, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI21356301, Length=167, Percent_Identity=26.9461077844311, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24640442, Length=226, Percent_Identity=30.0884955752212, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI221331216, Length=238, Percent_Identity=26.890756302521, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24665247, Length=238, Percent_Identity=27.3109243697479, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI18859837, Length=180, Percent_Identity=30, Blast_Score=72, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24641388, Length=213, Percent_Identity=30.0469483568075, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24639444, Length=192, Percent_Identity=28.6458333333333, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI161076933, Length=194, Percent_Identity=30.9278350515464, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24584748, Length=194, Percent_Identity=30.9278350515464, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24644337, Length=202, Percent_Identity=32.1782178217822, Blast_Score=66, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 32280; Mature: 32280

Theoretical pI: Translated: 10.68; Mature: 10.68

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDFSNKVAAITGAGSGMGRSLAVELARRGCHLALSDINEIGLAQTVALCSAHGVRVSSQ
CCCCCCCEEEEEECCCCCCHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHCCCEECHH
RLDVASREAVFGWAKATREAHGRVNLVFNNAGVSLAAPAEHVRIEDFAWIMDINFWGVVH
HCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCEEEECCHHHEEEEEEEEEEEEEEEEEEC
GTQAFLPYLRESGDGHVINTSSLFGLVSMPTQSTYNASKFAVRGFTEALRMELELERAPV
CHHHHHHHHHCCCCCCEEEHHHHHEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
SATCVHPGGVATNIATASRIDERIAALTGQSPDAHRRAANKLIDATSADEAARQILAGVA
EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH
RNARRVLIGADARRLDRIARLFGAAYQVFVLRFVRSSRERNLRRHGAGAAANHSAETRDA
CCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
A
C
>Mature Secondary Structure
MKDFSNKVAAITGAGSGMGRSLAVELARRGCHLALSDINEIGLAQTVALCSAHGVRVSSQ
CCCCCCCEEEEEECCCCCCHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHCCCEECHH
RLDVASREAVFGWAKATREAHGRVNLVFNNAGVSLAAPAEHVRIEDFAWIMDINFWGVVH
HCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCEEEECCHHHEEEEEEEEEEEEEEEEEEC
GTQAFLPYLRESGDGHVINTSSLFGLVSMPTQSTYNASKFAVRGFTEALRMELELERAPV
CHHHHHHHHHCCCCCCEEEHHHHHEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
SATCVHPGGVATNIATASRIDERIAALTGQSPDAHRRAANKLIDATSADEAARQILAGVA
EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH
RNARRVLIGADARRLDRIARLFGAAYQVFVLRFVRSSRERNLRRHGAGAAANHSAETRDA
CCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
A
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]