| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
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The map label for this gene is yuxL [H]
Identifier: 238024700
GI number: 238024700
Start: 1716586
End: 1718484
Strand: Reverse
Name: yuxL [H]
Synonym: bglu_2g13370
Alternate gene names: 238024700
Gene position: 1718484-1716586 (Counterclockwise)
Preceding gene: 238024702
Following gene: 238024698
Centisome position: 60.78
GC content: 70.04
Gene sequence:
>1899_bases ATGGAACCCATCCCGCAGCGCGCCGCCGGTGCGGCGCCCGTCAAACGCCACGATGTCCGCGACTTCTTTCGCCGCCCCGC ACGCACCGGCTTCCAGCTTTCGCCGGACGGCCGCCACCTGTCGTTCCTCGCGCGCCATGCCGGCCGCCTCAATCTGTTCG TGCAGGCCATCGACGGCCAGGGCCGCGTCCATGGCGAGCCGCGCGTGCTCAGCCACGAATCGGCGCGCGACGTGTCCGGC TACGTCTGGAAGGGCAATGACCGCGTGCTGTACGTGAAGGACTTCGGCGGCGACGAGAACTACCACGTGCTGTCGGTGCC GATCGACGGCGGCCCGGCCGTGGACCTGACGCCTTACGACGGCGTGCGCGCCTCGATCGTCGACCGGCTGATCGACGACG ACCGCCACGTCCTGCTGTCGCACAACCGCCGCGACGCCACCGTGTTCGACGTGCTGCGGGTGGACGTGATCACCGGCGAG GCGAGCCTGGTCGCCGAGAACCCCGGCAACGTCCTCGGCTGGATGACCGACCACGCGGGGCGGCTGCGCGTGGCCGTCTC GTCGGACGGCGTGAACCGGACGCTGCTCTATCGCGACGAGGAGAGCGAGCCGTTTCGCGCGCTCGTCACCACCAACTTCC GCGAGGCGCTCGCGCCGCTCTTCTTCACGTTCGACGACCGCCGGCTCTACGTGCTGTCCAACCGCGGGCGCGACCGCGTC GCGATCTTCGAGTTCGATCCGCAGACCGGGCTGGAAGGCACGCTGCTGTTCGAGCACGCCGAGGTGGACGTGAAGGGCAT GAGCTTCTCGCGCGAGCGGCGCGTGCTGACCACCGCCTGGTACGAGGACGACCGGGTCCGCGCGCATCATTTCGACGCGC GGGTGGCCGACATCTACGCCGATCTCGACGCGCGCCTGCCGGGCGGCGAATCGAGCATCGCGAGTCTCACGCGCGACGAA TCGCGGATGCTGGTGCGCAACGCGCGCGACCTGTCGCCGGGCGCGGTCTGGTTCTACCACGCCGGCTCGCGCCAACTCAC GCAGATCGAGGATCTCGCGCCGTGGCTCGATCCGGCCGACATGGCGCCGATGCGGCCGATCGCATACACCTCGCGCGACG GGCTGCGCATTCACGGCTACCTGACGCTGCCGGCCGGCGTCGAGCCCGACGCGCCCGGCGCCGCGAAGCTGCCGCTGGTG GTGAACCCGCATGGCGGGCCGTGGGCGCGCGACCACTGGGGCTTCGATCCCGAGGTGCAGCTGCTCGCCAATCGCGGCTA TGCGGTGCTGCAGATGAACTTCCGCGGCTCGGTGGGCTATGGCCGCGCGTTCTGGGAGGCGAGCTTCGGCCAGTGGGGCC GGGCGATGCAGAACGACATCGACGACGGCGTCGACTGGCTGGTGGGGCAGGGGCTCGTCGATCCGGCGCGCGTCGCGATC TACGGCGCGAGCTACGGCGGCTACGCGGCGCTGGCCGGCGTCGCGTTCACGCCCGAGCGCTATGCGGCCGCCGTCGACTA CGTCGGCGTCTCCAACCTGTTCACGCTGCTCGAATCGATGCCGCCTTACTGGAAGCCGCTGCGCGAGATGATGTACGAGC AGATCGGCAACCCGAACACCGAGGCCGGGCGGCAGGCGCTGCACGACGCCTCGCCGCTGTTCTTCGCCGATCGCATCGTC ACGCCGCTGTTCGTCGCGCAGGGGGCCAACGATCCGCGCGTCAAGCAGGCCGAGAGCGACCAGATCGTGGCCGCGCTGCG CGAGCGCGGGGTGGACGTCAAGTACATGCTGAAGGCCGACGAGGGGCACGGCTTCGCCAACGAGGAGAACCAGTACGAGT TCTACGAGGCGATGATCGCGTTTCTCGACACGCATCTCGGCACCGCGCGCGAGGGCTGA
Upstream 100 bases:
>100_bases ACCGCGCGGCGGCGCTAGAATGGCGGGTCCGCCCGAGCCTTCAGCCGGGCGAGCCGGCTCTGGCCGGCGCGCCCTGGACA CCAACCGAACAGGTGAGCCC
Downstream 100 bases:
>100_bases GGGCGGCGCTGCCTGCCGGCGGGCGGCGCGCCGGCCCTGCGCGAAAGGCGCGCCGCTCAGGCCGTGCCGGTCTTGCGTGC GGCGCGGCGTGCCGCCGGTG
Product: peptidase S9, prolyl oligopeptidase
Products: Hydrolyzed protein [C]
Alternate protein names: NA
Number of amino acids: Translated: 632; Mature: 632
Protein sequence:
>632_residues MEPIPQRAAGAAPVKRHDVRDFFRRPARTGFQLSPDGRHLSFLARHAGRLNLFVQAIDGQGRVHGEPRVLSHESARDVSG YVWKGNDRVLYVKDFGGDENYHVLSVPIDGGPAVDLTPYDGVRASIVDRLIDDDRHVLLSHNRRDATVFDVLRVDVITGE ASLVAENPGNVLGWMTDHAGRLRVAVSSDGVNRTLLYRDEESEPFRALVTTNFREALAPLFFTFDDRRLYVLSNRGRDRV AIFEFDPQTGLEGTLLFEHAEVDVKGMSFSRERRVLTTAWYEDDRVRAHHFDARVADIYADLDARLPGGESSIASLTRDE SRMLVRNARDLSPGAVWFYHAGSRQLTQIEDLAPWLDPADMAPMRPIAYTSRDGLRIHGYLTLPAGVEPDAPGAAKLPLV VNPHGGPWARDHWGFDPEVQLLANRGYAVLQMNFRGSVGYGRAFWEASFGQWGRAMQNDIDDGVDWLVGQGLVDPARVAI YGASYGGYAALAGVAFTPERYAAAVDYVGVSNLFTLLESMPPYWKPLREMMYEQIGNPNTEAGRQALHDASPLFFADRIV TPLFVAQGANDPRVKQAESDQIVAALRERGVDVKYMLKADEGHGFANEENQYEFYEAMIAFLDTHLGTAREG
Sequences:
>Translated_632_residues MEPIPQRAAGAAPVKRHDVRDFFRRPARTGFQLSPDGRHLSFLARHAGRLNLFVQAIDGQGRVHGEPRVLSHESARDVSG YVWKGNDRVLYVKDFGGDENYHVLSVPIDGGPAVDLTPYDGVRASIVDRLIDDDRHVLLSHNRRDATVFDVLRVDVITGE ASLVAENPGNVLGWMTDHAGRLRVAVSSDGVNRTLLYRDEESEPFRALVTTNFREALAPLFFTFDDRRLYVLSNRGRDRV AIFEFDPQTGLEGTLLFEHAEVDVKGMSFSRERRVLTTAWYEDDRVRAHHFDARVADIYADLDARLPGGESSIASLTRDE SRMLVRNARDLSPGAVWFYHAGSRQLTQIEDLAPWLDPADMAPMRPIAYTSRDGLRIHGYLTLPAGVEPDAPGAAKLPLV VNPHGGPWARDHWGFDPEVQLLANRGYAVLQMNFRGSVGYGRAFWEASFGQWGRAMQNDIDDGVDWLVGQGLVDPARVAI YGASYGGYAALAGVAFTPERYAAAVDYVGVSNLFTLLESMPPYWKPLREMMYEQIGNPNTEAGRQALHDASPLFFADRIV TPLFVAQGANDPRVKQAESDQIVAALRERGVDVKYMLKADEGHGFANEENQYEFYEAMIAFLDTHLGTAREG >Mature_632_residues MEPIPQRAAGAAPVKRHDVRDFFRRPARTGFQLSPDGRHLSFLARHAGRLNLFVQAIDGQGRVHGEPRVLSHESARDVSG YVWKGNDRVLYVKDFGGDENYHVLSVPIDGGPAVDLTPYDGVRASIVDRLIDDDRHVLLSHNRRDATVFDVLRVDVITGE ASLVAENPGNVLGWMTDHAGRLRVAVSSDGVNRTLLYRDEESEPFRALVTTNFREALAPLFFTFDDRRLYVLSNRGRDRV AIFEFDPQTGLEGTLLFEHAEVDVKGMSFSRERRVLTTAWYEDDRVRAHHFDARVADIYADLDARLPGGESSIASLTRDE SRMLVRNARDLSPGAVWFYHAGSRQLTQIEDLAPWLDPADMAPMRPIAYTSRDGLRIHGYLTLPAGVEPDAPGAAKLPLV VNPHGGPWARDHWGFDPEVQLLANRGYAVLQMNFRGSVGYGRAFWEASFGQWGRAMQNDIDDGVDWLVGQGLVDPARVAI YGASYGGYAALAGVAFTPERYAAAVDYVGVSNLFTLLESMPPYWKPLREMMYEQIGNPNTEAGRQALHDASPLFFADRIV TPLFVAQGANDPRVKQAESDQIVAALRERGVDVKYMLKADEGHGFANEENQYEFYEAMIAFLDTHLGTAREG
Specific function: Cleaves Peptide Bonds On The C-Terminal Side Of Lysyl And Argininyl Residues. [C]
COG id: COG1506
COG function: function code E; Dipeptidyl aminopeptidases/acylaminoacyl-peptidases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase S9B family [H]
Homologues:
Organism=Homo sapiens, GI23510451, Length=241, Percent_Identity=28.6307053941909, Blast_Score=96, Evalue=8e-20, Organism=Homo sapiens, GI194394146, Length=275, Percent_Identity=25.0909090909091, Blast_Score=67, Evalue=4e-11, Organism=Caenorhabditis elegans, GI25144537, Length=653, Percent_Identity=30.1684532924962, Blast_Score=281, Evalue=7e-76, Organism=Caenorhabditis elegans, GI25144540, Length=443, Percent_Identity=34.7629796839729, Blast_Score=253, Evalue=2e-67, Organism=Caenorhabditis elegans, GI25144543, Length=561, Percent_Identity=26.7379679144385, Blast_Score=193, Evalue=3e-49, Organism=Caenorhabditis elegans, GI17552908, Length=230, Percent_Identity=33.4782608695652, Blast_Score=112, Evalue=5e-25, Organism=Caenorhabditis elegans, GI25149159, Length=265, Percent_Identity=26.4150943396226, Blast_Score=84, Evalue=3e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011042 - InterPro: IPR011659 - InterPro: IPR001375 [H]
Pfam domain/function: PF07676 PD40; PF00326 Peptidase_S9 [H]
EC number: 3.4.21.83 [C]
Molecular weight: Translated: 70427; Mature: 70427
Theoretical pI: Translated: 5.39; Mature: 5.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEPIPQRAAGAAPVKRHDVRDFFRRPARTGFQLSPDGRHLSFLARHAGRLNLFVQAIDGQ CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEECCCCCHHHHHHHCCCCEEEEEEEECCC GRVHGEPRVLSHESARDVSGYVWKGNDRVLYVKDFGGDENYHVLSVPIDGGPAVDLTPYD CEECCCCCEECCCCCCCCCCEEEECCCEEEEEEECCCCCCEEEEEEECCCCCEEECCCCC GVRASIVDRLIDDDRHVLLSHNRRDATVFDVLRVDVITGEASLVAENPGNVLGWMTDHAG CHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEEEEEEECCCEEEECCCCCEEEEEECCCC RLRVAVSSDGVNRTLLYRDEESEPFRALVTTNFREALAPLFFTFDDRRLYVLSNRGRDRV EEEEEEECCCCCEEEEEECCCCCCEEEEEECCHHHHHHCEEEEECCCEEEEEECCCCCEE AIFEFDPQTGLEGTLLFEHAEVDVKGMSFSRERRVLTTAWYEDDRVRAHHFDARVADIYA EEEEECCCCCCCEEEEEEECEEEEECCCCCCCCCEEEEEEECCCCEEEEECCCHHHHHHH DLDARLPGGESSIASLTRDESRMLVRNARDLSPGAVWFYHAGSRQLTQIEDLAPWLDPAD CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHCCCCCCCC MAPMRPIAYTSRDGLRIHGYLTLPAGVEPDAPGAAKLPLVVNPHGGPWARDHWGFDPEVQ CCCCCCEEECCCCCEEEEEEEEECCCCCCCCCCCEECCEEECCCCCCCCCCCCCCCCCCC LLANRGYAVLQMNFRGSVGYGRAFWEASFGQWGRAMQNDIDDGVDWLVGQGLVDPARVAI EEECCCEEEEEEECCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEE YGASYGGYAALAGVAFTPERYAAAVDYVGVSNLFTLLESMPPYWKPLREMMYEQIGNPNT EECCCCCHHHHHCEEECCHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCC EAGRQALHDASPLFFADRIVTPLFVAQGANDPRVKQAESDQIVAALRERGVDVKYMLKAD HHHHHHHHCCCCCEEHHHHHHHHHEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEEC EGHGFANEENQYEFYEAMIAFLDTHLGTAREG CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MEPIPQRAAGAAPVKRHDVRDFFRRPARTGFQLSPDGRHLSFLARHAGRLNLFVQAIDGQ CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEECCCCCHHHHHHHCCCCEEEEEEEECCC GRVHGEPRVLSHESARDVSGYVWKGNDRVLYVKDFGGDENYHVLSVPIDGGPAVDLTPYD CEECCCCCEECCCCCCCCCCEEEECCCEEEEEEECCCCCCEEEEEEECCCCCEEECCCCC GVRASIVDRLIDDDRHVLLSHNRRDATVFDVLRVDVITGEASLVAENPGNVLGWMTDHAG CHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEEEEEEECCCEEEECCCCCEEEEEECCCC RLRVAVSSDGVNRTLLYRDEESEPFRALVTTNFREALAPLFFTFDDRRLYVLSNRGRDRV EEEEEEECCCCCEEEEEECCCCCCEEEEEECCHHHHHHCEEEEECCCEEEEEECCCCCEE AIFEFDPQTGLEGTLLFEHAEVDVKGMSFSRERRVLTTAWYEDDRVRAHHFDARVADIYA EEEEECCCCCCCEEEEEEECEEEEECCCCCCCCCEEEEEEECCCCEEEEECCCHHHHHHH DLDARLPGGESSIASLTRDESRMLVRNARDLSPGAVWFYHAGSRQLTQIEDLAPWLDPAD CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHCCCCCCCC MAPMRPIAYTSRDGLRIHGYLTLPAGVEPDAPGAAKLPLVVNPHGGPWARDHWGFDPEVQ CCCCCCEEECCCCCEEEEEEEEECCCCCCCCCCCEECCEEECCCCCCCCCCCCCCCCCCC LLANRGYAVLQMNFRGSVGYGRAFWEASFGQWGRAMQNDIDDGVDWLVGQGLVDPARVAI EEECCCEEEEEEECCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEE YGASYGGYAALAGVAFTPERYAAAVDYVGVSNLFTLLESMPPYWKPLREMMYEQIGNPNT EECCCCCHHHHHCEEECCHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCC EAGRQALHDASPLFFADRIVTPLFVAQGANDPRVKQAESDQIVAALRERGVDVKYMLKAD HHHHHHHHCCCCCEEHHHHHHHHHEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEEC EGHGFANEENQYEFYEAMIAFLDTHLGTAREG CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: Ca2+ [C]
Kcat value (1/min): 11820 [C]
Specific activity: NA
Km value (mM): 0.23 {tosyl-Arg} 0.33 {N-benzyloxycarbonyl-Lys} 0.31 {N-benzyloxycarbonyl-Lys} 0.92 {benzoyl-Lys} 0.6 {N-benzoyl-Arg} 0.5 {benzoyl-Arg} 0.48 {benzoyl-Arg} 0.25 {benzoyl-Arg} 80 {acetyl-tyrosine} 0.47 {tosyl-Lys-methyl} [C]
Substrates: Protein; H2O [C]
Specific reaction: Protein + H2O = hydrolyzed protein [C]
General reaction: Peptide bond hydrolysis [C]
Inhibitor: Antipain; Aromaticamidines; Benzamidine; Co2+; DFP; Fe2+; Hg2+; L-Arginine; Leupeptin sulfhydryl agents, trypsin inhibitors, 1, 10-phenanthroline; p-Aminobenzamidine; Tosyl -Leuchloromethyl ketone; Zn2+ [C]
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377; 3098560 [H]