| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
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The map label for this gene is 238024453
Identifier: 238024453
GI number: 238024453
Start: 1338808
End: 1339938
Strand: Reverse
Name: 238024453
Synonym: bglu_2g10490
Alternate gene names: NA
Gene position: 1339938-1338808 (Counterclockwise)
Preceding gene: 238024454
Following gene: 238024452
Centisome position: 47.39
GC content: 69.85
Gene sequence:
>1131_bases ATGAATCTGGAGTCGTTGAATACCCCCGCCGCGCTGATCGACGTCGCGCGCATGAACCGCAACATCGAACGGATGCAGCA GCGCATGAACGCGCTCGGCGTGAATTTCCGGCCGCACATCAAGACGAGCAAGTGCGCGCCGGTCGTCACGGCGCAGCTCG AGGCCGGCGCGCGAGGCATCACGGTGTCCACGCTCAAGGAGGCCGAACAGTTCTTCGCGCTCGGCGTTCGCGACATCGTC TACGCGGTCGGCATCGCGCCGGCGAAGCTCGCGCAGGCGCTGGCCCTGCGCCGGCGCGGCTGCGACCTGAAGATCGTCGC CGACAGCGTCGCCTGCGCCCAAGCCATCGTCGCGTTCGGCCGCCAGCACGGGGAAAGCTTCGAGGTCTGGATCGAGGTCG ATGTCGACGGCCACCGCTCGGGCCTCGATCCCGAGGACGAGGCGCTGCTCGCGGTCGCGGCGACGCTGGTGGGCGGCGGC ATGCACCTGGGCGGCGTGATGGCGCACGCCGGCTCCAGCTACGAGCACGATACCCACGACGCCCTGGTTCGCCTGGCTGA GCAGGAGCGTTCGCGCAGCGTGCGGGCCGCCGAACGCATCCGCTCGGCCGGCCTGTCGTGCCAGGCCGTCAGCATCGGCT CGACGCCGACCGCGCTGGCCGCCGAGCGGCTGGACGGCGTGACCGAGGTGCGCGCGGGCGTCTACGTGCTGTTCGATCTC GTCATGCACAACGTGGGCGTGAGCCGGCTGTCCGAGCTGGCGCTGAGCGTCCTGACCACGGTGATCGGCCACCAGCGCGA AAAAGGCTGGGCCATCGTCGACGCCGGCTGGATGGCGATGAGCCGGGACCGCGGCACCCAGCGCCAGAAGCGCGACTTCG GCTACGGACTGGTTTGCCTCGAGAACGGCGAGGTGCTGGACGGCTACCTGATGAGCGGCGCGAACCAGGAGCACGGCATC GTGTCGCGCTCCGGCGCGCCGGACCACGCAATCGAGCAGCGCTTGCCGATCGGCACGCGCTTGCGCATCCTCCCCAACCA CGCTTGCGCCACCGGCGCGCAGCATCCCGCCTACCAGGCCGTCAAGCCGGACGGAAGCATCGAGACCTGGCCGCGATTCT ATGGCTGGTGA
Upstream 100 bases:
>100_bases CGGCCGTTAAGCACAAAGCCTCGATCCGCTCGTATAGTGGCCGATCCGAACGCGCGAGGCCGGTGCCGCGCCGCGTGTGC CGCATGATCCGGAGCGAGAG
Downstream 100 bases:
>100_bases CTCGCGGCGCCGTTCGGCGCCCGGCGGCAAACCGCGCCCGCCTCGCGGCCGAACGGCCAGCGCCGGCGCGGCCGGCCCGG CGCCAATCCAGGAAAAGATA
Product: alanine racemase domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 376; Mature: 376
Protein sequence:
>376_residues MNLESLNTPAALIDVARMNRNIERMQQRMNALGVNFRPHIKTSKCAPVVTAQLEAGARGITVSTLKEAEQFFALGVRDIV YAVGIAPAKLAQALALRRRGCDLKIVADSVACAQAIVAFGRQHGESFEVWIEVDVDGHRSGLDPEDEALLAVAATLVGGG MHLGGVMAHAGSSYEHDTHDALVRLAEQERSRSVRAAERIRSAGLSCQAVSIGSTPTALAAERLDGVTEVRAGVYVLFDL VMHNVGVSRLSELALSVLTTVIGHQREKGWAIVDAGWMAMSRDRGTQRQKRDFGYGLVCLENGEVLDGYLMSGANQEHGI VSRSGAPDHAIEQRLPIGTRLRILPNHACATGAQHPAYQAVKPDGSIETWPRFYGW
Sequences:
>Translated_376_residues MNLESLNTPAALIDVARMNRNIERMQQRMNALGVNFRPHIKTSKCAPVVTAQLEAGARGITVSTLKEAEQFFALGVRDIV YAVGIAPAKLAQALALRRRGCDLKIVADSVACAQAIVAFGRQHGESFEVWIEVDVDGHRSGLDPEDEALLAVAATLVGGG MHLGGVMAHAGSSYEHDTHDALVRLAEQERSRSVRAAERIRSAGLSCQAVSIGSTPTALAAERLDGVTEVRAGVYVLFDL VMHNVGVSRLSELALSVLTTVIGHQREKGWAIVDAGWMAMSRDRGTQRQKRDFGYGLVCLENGEVLDGYLMSGANQEHGI VSRSGAPDHAIEQRLPIGTRLRILPNHACATGAQHPAYQAVKPDGSIETWPRFYGW >Mature_376_residues MNLESLNTPAALIDVARMNRNIERMQQRMNALGVNFRPHIKTSKCAPVVTAQLEAGARGITVSTLKEAEQFFALGVRDIV YAVGIAPAKLAQALALRRRGCDLKIVADSVACAQAIVAFGRQHGESFEVWIEVDVDGHRSGLDPEDEALLAVAATLVGGG MHLGGVMAHAGSSYEHDTHDALVRLAEQERSRSVRAAERIRSAGLSCQAVSIGSTPTALAAERLDGVTEVRAGVYVLFDL VMHNVGVSRLSELALSVLTTVIGHQREKGWAIVDAGWMAMSRDRGTQRQKRDFGYGLVCLENGEVLDGYLMSGANQEHGI VSRSGAPDHAIEQRLPIGTRLRILPNHACATGAQHPAYQAVKPDGSIETWPRFYGW
Specific function: Catalyzes the reversible cleavage of D-theronine or D- allothreonine into glycine and acetaldehyde. Can also cleave D- beta-phenylserine, D-beta-hydroxy-alpha-aminovaleric acid, D-beta- 3,4-dihydroxyphenylserine and D-beta-3,4- methylenedioxyphenylserine
COG id: COG3616
COG function: function code E; Predicted amino acid aldolase or racemase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the DSD1 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001608 [H]
Pfam domain/function: PF01168 Ala_racemase_N [H]
EC number: =4.1.2.42 [H]
Molecular weight: Translated: 40573; Mature: 40573
Theoretical pI: Translated: 7.17; Mature: 7.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNLESLNTPAALIDVARMNRNIERMQQRMNALGVNFRPHIKTSKCAPVVTAQLEAGARGI CCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHEEEECCCCCCCC TVSTLKEAEQFFALGVRDIVYAVGIAPAKLAQALALRRRGCDLKIVADSVACAQAIVAFG CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHH RQHGESFEVWIEVDVDGHRSGLDPEDEALLAVAATLVGGGMHLGGVMAHAGSSYEHDTHD HHCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHH ALVRLAEQERSRSVRAAERIRSAGLSCQAVSIGSTPTALAAERLDGVTEVRAGVYVLFDL HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCHHHHHHHHHHHHHH VMHNVGVSRLSELALSVLTTVIGHQREKGWAIVDAGWMAMSRDRGTQRQKRDFGYGLVCL HHHHCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHCCCCCHHHHHCCCCEEEEE ENGEVLDGYLMSGANQEHGIVSRSGAPDHAIEQRLPIGTRLRILPNHACATGAQHPAYQA CCCCEEEHHHHCCCCCCCCEEECCCCCCHHHHHCCCCCCEEEEECCCHHHCCCCCCCCCC VKPDGSIETWPRFYGW CCCCCCCCCCCHHCCC >Mature Secondary Structure MNLESLNTPAALIDVARMNRNIERMQQRMNALGVNFRPHIKTSKCAPVVTAQLEAGARGI CCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHEEEECCCCCCCC TVSTLKEAEQFFALGVRDIVYAVGIAPAKLAQALALRRRGCDLKIVADSVACAQAIVAFG CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHH RQHGESFEVWIEVDVDGHRSGLDPEDEALLAVAATLVGGGMHLGGVMAHAGSSYEHDTHD HHCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHH ALVRLAEQERSRSVRAAERIRSAGLSCQAVSIGSTPTALAAERLDGVTEVRAGVYVLFDL HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCHHHHHHHHHHHHHH VMHNVGVSRLSELALSVLTTVIGHQREKGWAIVDAGWMAMSRDRGTQRQKRDFGYGLVCL HHHHCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHCCCCCHHHHHCCCCEEEEE ENGEVLDGYLMSGANQEHGIVSRSGAPDHAIEQRLPIGTRLRILPNHACATGAQHPAYQA CCCCEEEHHHHCCCCCCCCEEECCCCCCHHHHHCCCCCCEEEEECCCHHHCCCCCCCCCC VKPDGSIETWPRFYGW CCCCCCCCCCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9642221 [H]