Definition Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence.
Accession NC_012721
Length 2,827,333

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The map label for this gene is 238024453

Identifier: 238024453

GI number: 238024453

Start: 1338808

End: 1339938

Strand: Reverse

Name: 238024453

Synonym: bglu_2g10490

Alternate gene names: NA

Gene position: 1339938-1338808 (Counterclockwise)

Preceding gene: 238024454

Following gene: 238024452

Centisome position: 47.39

GC content: 69.85

Gene sequence:

>1131_bases
ATGAATCTGGAGTCGTTGAATACCCCCGCCGCGCTGATCGACGTCGCGCGCATGAACCGCAACATCGAACGGATGCAGCA
GCGCATGAACGCGCTCGGCGTGAATTTCCGGCCGCACATCAAGACGAGCAAGTGCGCGCCGGTCGTCACGGCGCAGCTCG
AGGCCGGCGCGCGAGGCATCACGGTGTCCACGCTCAAGGAGGCCGAACAGTTCTTCGCGCTCGGCGTTCGCGACATCGTC
TACGCGGTCGGCATCGCGCCGGCGAAGCTCGCGCAGGCGCTGGCCCTGCGCCGGCGCGGCTGCGACCTGAAGATCGTCGC
CGACAGCGTCGCCTGCGCCCAAGCCATCGTCGCGTTCGGCCGCCAGCACGGGGAAAGCTTCGAGGTCTGGATCGAGGTCG
ATGTCGACGGCCACCGCTCGGGCCTCGATCCCGAGGACGAGGCGCTGCTCGCGGTCGCGGCGACGCTGGTGGGCGGCGGC
ATGCACCTGGGCGGCGTGATGGCGCACGCCGGCTCCAGCTACGAGCACGATACCCACGACGCCCTGGTTCGCCTGGCTGA
GCAGGAGCGTTCGCGCAGCGTGCGGGCCGCCGAACGCATCCGCTCGGCCGGCCTGTCGTGCCAGGCCGTCAGCATCGGCT
CGACGCCGACCGCGCTGGCCGCCGAGCGGCTGGACGGCGTGACCGAGGTGCGCGCGGGCGTCTACGTGCTGTTCGATCTC
GTCATGCACAACGTGGGCGTGAGCCGGCTGTCCGAGCTGGCGCTGAGCGTCCTGACCACGGTGATCGGCCACCAGCGCGA
AAAAGGCTGGGCCATCGTCGACGCCGGCTGGATGGCGATGAGCCGGGACCGCGGCACCCAGCGCCAGAAGCGCGACTTCG
GCTACGGACTGGTTTGCCTCGAGAACGGCGAGGTGCTGGACGGCTACCTGATGAGCGGCGCGAACCAGGAGCACGGCATC
GTGTCGCGCTCCGGCGCGCCGGACCACGCAATCGAGCAGCGCTTGCCGATCGGCACGCGCTTGCGCATCCTCCCCAACCA
CGCTTGCGCCACCGGCGCGCAGCATCCCGCCTACCAGGCCGTCAAGCCGGACGGAAGCATCGAGACCTGGCCGCGATTCT
ATGGCTGGTGA

Upstream 100 bases:

>100_bases
CGGCCGTTAAGCACAAAGCCTCGATCCGCTCGTATAGTGGCCGATCCGAACGCGCGAGGCCGGTGCCGCGCCGCGTGTGC
CGCATGATCCGGAGCGAGAG

Downstream 100 bases:

>100_bases
CTCGCGGCGCCGTTCGGCGCCCGGCGGCAAACCGCGCCCGCCTCGCGGCCGAACGGCCAGCGCCGGCGCGGCCGGCCCGG
CGCCAATCCAGGAAAAGATA

Product: alanine racemase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 376; Mature: 376

Protein sequence:

>376_residues
MNLESLNTPAALIDVARMNRNIERMQQRMNALGVNFRPHIKTSKCAPVVTAQLEAGARGITVSTLKEAEQFFALGVRDIV
YAVGIAPAKLAQALALRRRGCDLKIVADSVACAQAIVAFGRQHGESFEVWIEVDVDGHRSGLDPEDEALLAVAATLVGGG
MHLGGVMAHAGSSYEHDTHDALVRLAEQERSRSVRAAERIRSAGLSCQAVSIGSTPTALAAERLDGVTEVRAGVYVLFDL
VMHNVGVSRLSELALSVLTTVIGHQREKGWAIVDAGWMAMSRDRGTQRQKRDFGYGLVCLENGEVLDGYLMSGANQEHGI
VSRSGAPDHAIEQRLPIGTRLRILPNHACATGAQHPAYQAVKPDGSIETWPRFYGW

Sequences:

>Translated_376_residues
MNLESLNTPAALIDVARMNRNIERMQQRMNALGVNFRPHIKTSKCAPVVTAQLEAGARGITVSTLKEAEQFFALGVRDIV
YAVGIAPAKLAQALALRRRGCDLKIVADSVACAQAIVAFGRQHGESFEVWIEVDVDGHRSGLDPEDEALLAVAATLVGGG
MHLGGVMAHAGSSYEHDTHDALVRLAEQERSRSVRAAERIRSAGLSCQAVSIGSTPTALAAERLDGVTEVRAGVYVLFDL
VMHNVGVSRLSELALSVLTTVIGHQREKGWAIVDAGWMAMSRDRGTQRQKRDFGYGLVCLENGEVLDGYLMSGANQEHGI
VSRSGAPDHAIEQRLPIGTRLRILPNHACATGAQHPAYQAVKPDGSIETWPRFYGW
>Mature_376_residues
MNLESLNTPAALIDVARMNRNIERMQQRMNALGVNFRPHIKTSKCAPVVTAQLEAGARGITVSTLKEAEQFFALGVRDIV
YAVGIAPAKLAQALALRRRGCDLKIVADSVACAQAIVAFGRQHGESFEVWIEVDVDGHRSGLDPEDEALLAVAATLVGGG
MHLGGVMAHAGSSYEHDTHDALVRLAEQERSRSVRAAERIRSAGLSCQAVSIGSTPTALAAERLDGVTEVRAGVYVLFDL
VMHNVGVSRLSELALSVLTTVIGHQREKGWAIVDAGWMAMSRDRGTQRQKRDFGYGLVCLENGEVLDGYLMSGANQEHGI
VSRSGAPDHAIEQRLPIGTRLRILPNHACATGAQHPAYQAVKPDGSIETWPRFYGW

Specific function: Catalyzes the reversible cleavage of D-theronine or D- allothreonine into glycine and acetaldehyde. Can also cleave D- beta-phenylserine, D-beta-hydroxy-alpha-aminovaleric acid, D-beta- 3,4-dihydroxyphenylserine and D-beta-3,4- methylenedioxyphenylserine

COG id: COG3616

COG function: function code E; Predicted amino acid aldolase or racemase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DSD1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: =4.1.2.42 [H]

Molecular weight: Translated: 40573; Mature: 40573

Theoretical pI: Translated: 7.17; Mature: 7.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLESLNTPAALIDVARMNRNIERMQQRMNALGVNFRPHIKTSKCAPVVTAQLEAGARGI
CCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHEEEECCCCCCCC
TVSTLKEAEQFFALGVRDIVYAVGIAPAKLAQALALRRRGCDLKIVADSVACAQAIVAFG
CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHH
RQHGESFEVWIEVDVDGHRSGLDPEDEALLAVAATLVGGGMHLGGVMAHAGSSYEHDTHD
HHCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHH
ALVRLAEQERSRSVRAAERIRSAGLSCQAVSIGSTPTALAAERLDGVTEVRAGVYVLFDL
HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCHHHHHHHHHHHHHH
VMHNVGVSRLSELALSVLTTVIGHQREKGWAIVDAGWMAMSRDRGTQRQKRDFGYGLVCL
HHHHCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHCCCCCHHHHHCCCCEEEEE
ENGEVLDGYLMSGANQEHGIVSRSGAPDHAIEQRLPIGTRLRILPNHACATGAQHPAYQA
CCCCEEEHHHHCCCCCCCCEEECCCCCCHHHHHCCCCCCEEEEECCCHHHCCCCCCCCCC
VKPDGSIETWPRFYGW
CCCCCCCCCCCHHCCC
>Mature Secondary Structure
MNLESLNTPAALIDVARMNRNIERMQQRMNALGVNFRPHIKTSKCAPVVTAQLEAGARGI
CCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHEEEECCCCCCCC
TVSTLKEAEQFFALGVRDIVYAVGIAPAKLAQALALRRRGCDLKIVADSVACAQAIVAFG
CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHH
RQHGESFEVWIEVDVDGHRSGLDPEDEALLAVAATLVGGGMHLGGVMAHAGSSYEHDTHD
HHCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHH
ALVRLAEQERSRSVRAAERIRSAGLSCQAVSIGSTPTALAAERLDGVTEVRAGVYVLFDL
HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCHHHHHHHHHHHHHH
VMHNVGVSRLSELALSVLTTVIGHQREKGWAIVDAGWMAMSRDRGTQRQKRDFGYGLVCL
HHHHCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHCCCCCHHHHHCCCCEEEEE
ENGEVLDGYLMSGANQEHGIVSRSGAPDHAIEQRLPIGTRLRILPNHACATGAQHPAYQA
CCCCEEEHHHHCCCCCCCCEEECCCCCCHHHHHCCCCCCEEEEECCCHHHCCCCCCCCCC
VKPDGSIETWPRFYGW
CCCCCCCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9642221 [H]