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The map label for this gene is ybfI [H]

Identifier: 238024445

GI number: 238024445

Start: 1330008

End: 1330439

Strand: Direct

Name: ybfI [H]

Synonym: bglu_2g10410

Alternate gene names: 238024445

Gene position: 1330008-1330439 (Clockwise)

Preceding gene: 238024444

Following gene: 238024446

Centisome position: 47.04

GC content: 75.93

Gene sequence:

>432_bases
ATGACAGTGCAATCCGGCGGGCCGCCTCGCGTCGCGCAGCCCATGTCGCCGGCGATCGGCGACGTGCTGCGCACCATCGA
AGCCTCGTTCGCGCAGCCGCTGAACCTCGACACGCTCGCCGCGGTGGCGGGCCTGAGCGTGTCGCGCTTCACCGCGCGCT
TTCGCAGCGAAACCGGGCTGTCGCCGCACCGCTACCTGTGCCTCGTGCGGGTCCGGCGCGCGCAGGACCTGCTGCGCGCG
GGGCTCGCGCCGTCGGTGGTCGCGACCGACGTCGGCTTCTTCGACCAGAGCCACTTGTGCCGGCATTTCCGGCGCGTGCT
CGGCATCACGCCGCGCGACTACATGGCCGCCCGGGCGGGCGGCGCGGCGGCGCGCAGGCCGCTGGCGCGCCCGCCTGCCG
GGCGCCGCGCCGCGGCCTGCCACGCGGCATGA

Upstream 100 bases:

>100_bases
CCCGGGTCATTTCGGGCGCGCGTGGTTCCTGCCCTTGGTCGGCGCCTACTACCGGGTGCAGGATTTCCTGCACTGAGGCG
GGCGCCGGGGAGAATTCGAC

Downstream 100 bases:

>100_bases
GGCGCGGCATGGGGGGCACGGCCGCCCCGGCGTCTCCGGCCGGCGAGCCGGTGAACGACGATCGACGATATCGCGCGGCG
GCGCTCATCCAAGCCGCCGC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 143; Mature: 142

Protein sequence:

>143_residues
MTVQSGGPPRVAQPMSPAIGDVLRTIEASFAQPLNLDTLAAVAGLSVSRFTARFRSETGLSPHRYLCLVRVRRAQDLLRA
GLAPSVVATDVGFFDQSHLCRHFRRVLGITPRDYMAARAGGAAARRPLARPPAGRRAAACHAA

Sequences:

>Translated_143_residues
MTVQSGGPPRVAQPMSPAIGDVLRTIEASFAQPLNLDTLAAVAGLSVSRFTARFRSETGLSPHRYLCLVRVRRAQDLLRA
GLAPSVVATDVGFFDQSHLCRHFRRVLGITPRDYMAARAGGAAARRPLARPPAGRRAAACHAA
>Mature_142_residues
TVQSGGPPRVAQPMSPAIGDVLRTIEASFAQPLNLDTLAAVAGLSVSRFTARFRSETGLSPHRYLCLVRVRRAQDLLRAG
LAPSVVATDVGFFDQSHLCRHFRRVLGITPRDYMAARAGGAAARRPLARPPAGRRAAACHAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=94, Percent_Identity=37.2340425531915, Blast_Score=63, Evalue=9e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 15285; Mature: 15154

Theoretical pI: Translated: 12.13; Mature: 12.13

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVQSGGPPRVAQPMSPAIGDVLRTIEASFAQPLNLDTLAAVAGLSVSRFTARFRSETGL
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
SPHRYLCLVRVRRAQDLLRAGLAPSVVATDVGFFDQSHLCRHFRRVLGITPRDYMAARAG
CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHCC
GAAARRPLARPPAGRRAAACHAA
CHHHCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TVQSGGPPRVAQPMSPAIGDVLRTIEASFAQPLNLDTLAAVAGLSVSRFTARFRSETGL
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
SPHRYLCLVRVRRAQDLLRAGLAPSVVATDVGFFDQSHLCRHFRRVLGITPRDYMAARAG
CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHCC
GAAARRPLARPPAGRRAAACHAA
CHHHCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]