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The map label for this gene is nirD [H]

Identifier: 238024409

GI number: 238024409

Start: 1275830

End: 1276195

Strand: Direct

Name: nirD [H]

Synonym: bglu_2g10030

Alternate gene names: 238024409

Gene position: 1275830-1276195 (Clockwise)

Preceding gene: 238024408

Following gene: 238024410

Centisome position: 45.12

GC content: 70.49

Gene sequence:

>366_bases
ATGCATCGCGAACCGAAACTGGCTGCCGCCGCGCGCTGGACGCCCGTCTGCCAGCTCAACGACATCGTGCCGAACACGGG
CGTGTGCGCGCTCGTCAACGGCGGCCAGGTGGCCGTGTTCCGCGTCGAGGCCGGCGACGGCCGCACCAATATCTACGCGA
TCGACAACATCGATCCGCTGTCGCGCGCGGCGGTGCTCTCGCGCGGGCTGGTGGGCAGCCTCGGCGAGCGCGTGGTGGTG
GCCTCGCCGCTCTTCAAGCAGCACTTCGACCTGCGCACCGGCGAGTGCGTCGAGGCGCCGGAGAAATCGGTCGGGGTCTA
CGCCTCGCGCGTCGAGGGCGGCTTGGTCTGGGTCGAGGCGGCATGA

Upstream 100 bases:

>100_bases
TCCCGCGCTGCCCGGCGAGGCGGCCGAGCCGGCCGACGCCTCAGAGCCGGTGACCGCCTGAGGGCGGCCGGCGTTCAACC
ATCCGATCGAGGAGAAGCTC

Downstream 100 bases:

>100_bases
CGCCCGCCATCACGGGCGGGACAGGTGGGGCCGGGCCGCGCGCGATGCCGCGGCGGCTCGCCGATTGATCGCAACGGAGC
GGCAATGACGAACGCGAGCG

Product: nitrite reductase (NAD(P)H), small subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 121; Mature: 121

Protein sequence:

>121_residues
MHREPKLAAAARWTPVCQLNDIVPNTGVCALVNGGQVAVFRVEAGDGRTNIYAIDNIDPLSRAAVLSRGLVGSLGERVVV
ASPLFKQHFDLRTGECVEAPEKSVGVYASRVEGGLVWVEAA

Sequences:

>Translated_121_residues
MHREPKLAAAARWTPVCQLNDIVPNTGVCALVNGGQVAVFRVEAGDGRTNIYAIDNIDPLSRAAVLSRGLVGSLGERVVV
ASPLFKQHFDLRTGECVEAPEKSVGVYASRVEGGLVWVEAA
>Mature_121_residues
MHREPKLAAAARWTPVCQLNDIVPNTGVCALVNGGQVAVFRVEAGDGRTNIYAIDNIDPLSRAAVLSRGLVGSLGERVVV
ASPLFKQHFDLRTGECVEAPEKSVGVYASRVEGGLVWVEAA

Specific function: Required for activity of the reductase [H]

COG id: COG2146

COG function: function code PR; Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis nasE [H]

Homologues:

Organism=Escherichia coli, GI1789766, Length=106, Percent_Identity=45.2830188679245, Blast_Score=97, Evalue=3e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012748
- InterPro:   IPR017881
- InterPro:   IPR017941 [H]

Pfam domain/function: NA

EC number: =1.7.1.4 [H]

Molecular weight: Translated: 12856; Mature: 12856

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHREPKLAAAARWTPVCQLNDIVPNTGVCALVNGGQVAVFRVEAGDGRTNIYAIDNIDPL
CCCCCCCEECCCCCCCEEECCCCCCCCEEEEEECCEEEEEEEECCCCCEEEEEECCCCCH
SRAAVLSRGLVGSLGERVVVASPLFKQHFDLRTGECVEAPEKSVGVYASRVEGGLVWVEA
HHHHHHHCCCCCCCCCEEEEECCHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEE
A
C
>Mature Secondary Structure
MHREPKLAAAARWTPVCQLNDIVPNTGVCALVNGGQVAVFRVEAGDGRTNIYAIDNIDPL
CCCCCCCEECCCCCCCEEECCCCCCCCEEEEEECCEEEEEEEECCCCCEEEEEECCCCCH
SRAAVLSRGLVGSLGERVVVASPLFKQHFDLRTGECVEAPEKSVGVYASRVEGGLVWVEA
HHHHHHHCCCCCCCCCEEEEECCHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEE
A
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]