| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
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The map label for this gene is fdoG [H]
Identifier: 238024281
GI number: 238024281
Start: 1048478
End: 1050943
Strand: Direct
Name: fdoG [H]
Synonym: bglu_2g08640
Alternate gene names: 238024281
Gene position: 1048478-1050943 (Clockwise)
Preceding gene: 238024280
Following gene: 238024282
Centisome position: 37.08
GC content: 66.46
Gene sequence:
>2466_bases GTGGCAGGTCTTGCCCCGACGTTTGGCCGCGGCGCGATGACGAACCATTGGGTCGACATCAAGAACGCAGACATTATCCT GGTGATGGGCGGCAATGCCGCCGAAGCACATCCGTGCGGATTCAAGTGGGTGACGGAAGCCAAGGCGCATCGCAAGGCGC GGCTGATCGTGGTCGACCCGCGTTTCACGCGCACCGCATCGGTAGCGGACTACTACGCGCCGATTCGCACCGGCACGGAC ATCGCCTTCCTCGGCGGGGTGATCCATTACCTGCTCGCGAACGACAAGATCCAGCACGAGTACGTCAAGAACTACACGGA CTTTCCGTTCATCGTCCGTGAGGATTTCGCCTTCAACGACGGCATCTATTCCGGCTACAACCCGGACAAGCACGCCTACG ACAAGGGCACCTGGGACTACGAGCGGGGCGACGACGGCTTCGTGAAGCTCGATCCGACGCTCTCGCATCCGCGCTGCGTC TACAACCTGATGAAGCAGCACTACGCGCGCTACACGCCCGAGATGGTCGAGAAGACCTGCGGCACGCCCAAGGACAAGTT CCTGAAGGTGTGCGAGATGCTCGCGTCCACGGCGGTGCCCGGCCGCGCCGGCACGATCCTCTACGCGCTCGGCTGGACCC ACCACTCGGTCGGCGCGCAGATGATTCGCACCGGCGCGATGGTGCAGCTGCTGCTGGGCAACATCGGCATCGCCGGCGGC GGCATGAACGCGCTGCGCGGCCACTCGAACATCCAGGGGCTGACCGATCTCGGCCTGATGTCGAACCTGCTGCCCGGCTA CATGACGCTGCCGTCGCAGGCCGAGCAGGACTACGAGGCCTACATCGGCAAGCGCGCGACGCAGCCGCTGCGGCCCAACC AGCTCAGCTACTGGAAGAACTACCGCGCATTCTTCGTGAGCTTCATGAAGTCGTGGTGGGGCGACGCGGCCACCGCCGAG AACAACTTCGCCTACGACTACCTGCCGAAGCTCGACAAGCCCTACGACCTGCTGCAGACCATCGAGCTGATGGCGCAGGG CAAGATGAACGGCTACATCTGCCAGGGCTTCAACCCGCTCGCGGCCGCGCCCTCGAAGGCCAAGACCGCGGCCGCACTGG CCCGGCTGAAGTGGCTCGTGGTCATGGACCCGCTCGCCACCGAAACCTCCGAGTTCTGGAAGCCGCACGACGACTACAAC GTGGTCGACCCCGCGGCCGTGCAGACCGAGGTGTTCCGGCTGCCCACCACCTGCTTCGCCGAGGAGCGCGGCTCGCTCGT CAATTCGGGCCGCGTGCTGCAATGGCACTGGCAGGGCGCCGATGCGCCGGGCGAGGCGCGCAGCGACCTCGAGATCATGT CGGGGATCTTCCTGCGCCTGCGGGCCGCCTATCGGAAGGACGGCGGCAAGTATCCGGACCCGATCCTGAACCTGACCTGG CCGTATGCGAACCCGGAAAGCCCGACGCCCGAGGAACTGGCCATGGAGTTCAACGGCCGTGCGCTGGCCGACCTGCCCGA CCCGAAGGACCCCGCCAAGGTACTGGTCAAGCGCGGCGAGCAACTGGCCGGCTTCGCGCAGCTGAAGGACGACGGCACCA CCGCGAGCGGCTGCTGGATCTTCTGCGGCGCCTGGACGGCGGCCGGCAACCAGATGGGGCGGCGCGACAACTCGGACCCG ACCGGCATCGGCCAGACGTTGAACTGGGCCTGGGCCTGGCCCGCGAACCGGCGGATCCTCTACAACCGCGCCTCGTGCGA CACGGCCGGCAAGCCGTTCGATCCGACCCGCAAGCTGATCGGCTGGAACGGTCGCGCCTGGAGCGGTGCGGACGTGCCTG ACTACAAGGCCGACGAGGCGCCCGAGACCGGCATGGGGCCGTTCATCATGAACCCGGAAGGCGTGGCGCGCTTCTTCGCC CGCGACGGCATGAACGAAGGCCCGTTCCCCGAGCACTACGAGCCGTTCGAGACGCCGCTTGCGGCCAACCCGCTCAATCC GGGCAATCCGCGCGCGCTGAACAACCCGGCCGCGCGCGTGTTCCCGGACGACCGGGCCGCCTTCGGCACGCCCGACAAGT TCCCGCACACGGCCACCACCTACCGGCTCACCGAGCACTTCCACTACTGGACCAAGCATGCGCGCCTCAACGCGATCGTG CAGCCCCAGCAATTCGTGGAGATCGGCGAGGATCTCGCCAGGGAGGTGGGGGTGGTGCACGGCGACAAGGTCAGGGTGTC GTCGAACCGCGGCTACATCGTGGCGGTGGCGCTCGTGACCAAGCGCATCAAGCCGCTGATGGTGGAGGGGCGCAAGGTGC AGACGGTGGGCATTCCGCTGCACTGGGGCTTCAAGGGGCTGACCAAGCCCGGCTATCTCGCGAACACCCTGACGCCGTCG GTCGGCGACGGCAACTCGCAGACACCGGAATTCAAGTCGTTCCTGGTGAAAGTGGAAAAGGCATAA
Upstream 100 bases:
>100_bases GGCGGGCAGCAACGAAGTGGGCTATCTGACCCACAAGACGATTCGCAGTCTCGGGATGCTCGCCTTCGACAACCAGGCAC GTGTCTGACACGGCCCGACG
Downstream 100 bases:
>100_bases GGGGAACCCGAGATGGCATTGCAATCGCTGGACATCAAACGGGTGTCCGCCACCACCACCCCGCCGCCCACCGCGCGCGA TCCGGTCACGGGCACCGTCG
Product: formate dehydrogenase subunit alpha
Products: NA
Alternate protein names: Aerobic formate dehydrogenase major subunit; FDH-Z subunit alpha; Formate dehydrogenase-O subunit alpha [H]
Number of amino acids: Translated: 821; Mature: 820
Protein sequence:
>821_residues MAGLAPTFGRGAMTNHWVDIKNADIILVMGGNAAEAHPCGFKWVTEAKAHRKARLIVVDPRFTRTASVADYYAPIRTGTD IAFLGGVIHYLLANDKIQHEYVKNYTDFPFIVREDFAFNDGIYSGYNPDKHAYDKGTWDYERGDDGFVKLDPTLSHPRCV YNLMKQHYARYTPEMVEKTCGTPKDKFLKVCEMLASTAVPGRAGTILYALGWTHHSVGAQMIRTGAMVQLLLGNIGIAGG GMNALRGHSNIQGLTDLGLMSNLLPGYMTLPSQAEQDYEAYIGKRATQPLRPNQLSYWKNYRAFFVSFMKSWWGDAATAE NNFAYDYLPKLDKPYDLLQTIELMAQGKMNGYICQGFNPLAAAPSKAKTAAALARLKWLVVMDPLATETSEFWKPHDDYN VVDPAAVQTEVFRLPTTCFAEERGSLVNSGRVLQWHWQGADAPGEARSDLEIMSGIFLRLRAAYRKDGGKYPDPILNLTW PYANPESPTPEELAMEFNGRALADLPDPKDPAKVLVKRGEQLAGFAQLKDDGTTASGCWIFCGAWTAAGNQMGRRDNSDP TGIGQTLNWAWAWPANRRILYNRASCDTAGKPFDPTRKLIGWNGRAWSGADVPDYKADEAPETGMGPFIMNPEGVARFFA RDGMNEGPFPEHYEPFETPLAANPLNPGNPRALNNPAARVFPDDRAAFGTPDKFPHTATTYRLTEHFHYWTKHARLNAIV QPQQFVEIGEDLAREVGVVHGDKVRVSSNRGYIVAVALVTKRIKPLMVEGRKVQTVGIPLHWGFKGLTKPGYLANTLTPS VGDGNSQTPEFKSFLVKVEKA
Sequences:
>Translated_821_residues MAGLAPTFGRGAMTNHWVDIKNADIILVMGGNAAEAHPCGFKWVTEAKAHRKARLIVVDPRFTRTASVADYYAPIRTGTD IAFLGGVIHYLLANDKIQHEYVKNYTDFPFIVREDFAFNDGIYSGYNPDKHAYDKGTWDYERGDDGFVKLDPTLSHPRCV YNLMKQHYARYTPEMVEKTCGTPKDKFLKVCEMLASTAVPGRAGTILYALGWTHHSVGAQMIRTGAMVQLLLGNIGIAGG GMNALRGHSNIQGLTDLGLMSNLLPGYMTLPSQAEQDYEAYIGKRATQPLRPNQLSYWKNYRAFFVSFMKSWWGDAATAE NNFAYDYLPKLDKPYDLLQTIELMAQGKMNGYICQGFNPLAAAPSKAKTAAALARLKWLVVMDPLATETSEFWKPHDDYN VVDPAAVQTEVFRLPTTCFAEERGSLVNSGRVLQWHWQGADAPGEARSDLEIMSGIFLRLRAAYRKDGGKYPDPILNLTW PYANPESPTPEELAMEFNGRALADLPDPKDPAKVLVKRGEQLAGFAQLKDDGTTASGCWIFCGAWTAAGNQMGRRDNSDP TGIGQTLNWAWAWPANRRILYNRASCDTAGKPFDPTRKLIGWNGRAWSGADVPDYKADEAPETGMGPFIMNPEGVARFFA RDGMNEGPFPEHYEPFETPLAANPLNPGNPRALNNPAARVFPDDRAAFGTPDKFPHTATTYRLTEHFHYWTKHARLNAIV QPQQFVEIGEDLAREVGVVHGDKVRVSSNRGYIVAVALVTKRIKPLMVEGRKVQTVGIPLHWGFKGLTKPGYLANTLTPS VGDGNSQTPEFKSFLVKVEKA >Mature_820_residues AGLAPTFGRGAMTNHWVDIKNADIILVMGGNAAEAHPCGFKWVTEAKAHRKARLIVVDPRFTRTASVADYYAPIRTGTDI AFLGGVIHYLLANDKIQHEYVKNYTDFPFIVREDFAFNDGIYSGYNPDKHAYDKGTWDYERGDDGFVKLDPTLSHPRCVY NLMKQHYARYTPEMVEKTCGTPKDKFLKVCEMLASTAVPGRAGTILYALGWTHHSVGAQMIRTGAMVQLLLGNIGIAGGG MNALRGHSNIQGLTDLGLMSNLLPGYMTLPSQAEQDYEAYIGKRATQPLRPNQLSYWKNYRAFFVSFMKSWWGDAATAEN NFAYDYLPKLDKPYDLLQTIELMAQGKMNGYICQGFNPLAAAPSKAKTAAALARLKWLVVMDPLATETSEFWKPHDDYNV VDPAAVQTEVFRLPTTCFAEERGSLVNSGRVLQWHWQGADAPGEARSDLEIMSGIFLRLRAAYRKDGGKYPDPILNLTWP YANPESPTPEELAMEFNGRALADLPDPKDPAKVLVKRGEQLAGFAQLKDDGTTASGCWIFCGAWTAAGNQMGRRDNSDPT GIGQTLNWAWAWPANRRILYNRASCDTAGKPFDPTRKLIGWNGRAWSGADVPDYKADEAPETGMGPFIMNPEGVARFFAR DGMNEGPFPEHYEPFETPLAANPLNPGNPRALNNPAARVFPDDRAAFGTPDKFPHTATTYRLTEHFHYWTKHARLNAIVQ PQQFVEIGEDLAREVGVVHGDKVRVSSNRGYIVAVALVTKRIKPLMVEGRKVQTVGIPLHWGFKGLTKPGYLANTLTPSV GDGNSQTPEFKSFLVKVEKA
Specific function: Allows to use formate as major electron donor during aerobic respiration. Subunit alpha possibly forms the active site [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the prokaryotic molybdopterin-containing oxidoreductase family [H]
Homologues:
Organism=Escherichia coli, GI3868720, Length=820, Percent_Identity=64.2682926829268, Blast_Score=1140, Evalue=0.0, Organism=Escherichia coli, GI3868719, Length=821, Percent_Identity=61.0231425091352, Blast_Score=1090, Evalue=0.0, Organism=Escherichia coli, GI3868721, Length=460, Percent_Identity=22.1739130434783, Blast_Score=114, Evalue=2e-26, Organism=Escherichia coli, GI87081797, Length=249, Percent_Identity=26.5060240963855, Blast_Score=80, Evalue=4e-16, Organism=Escherichia coli, GI1787870, Length=234, Percent_Identity=27.7777777777778, Blast_Score=74, Evalue=4e-14, Organism=Escherichia coli, GI171474008, Length=233, Percent_Identity=26.6094420600858, Blast_Score=73, Evalue=6e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009010 - InterPro: IPR006443 - InterPro: IPR006657 - InterPro: IPR006656 - InterPro: IPR006963 - InterPro: IPR006655 - InterPro: IPR006311 [H]
Pfam domain/function: PF04879 Molybdop_Fe4S4; PF00384 Molybdopterin; PF01568 Molydop_binding [H]
EC number: =1.2.1.2 [H]
Molecular weight: Translated: 91077; Mature: 90946
Theoretical pI: Translated: 7.99; Mature: 7.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAGLAPTFGRGAMTNHWVDIKNADIILVMGGNAAEAHPCGFKWVTEAKAHRKARLIVVDP CCCCCCCCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCEEEEEECC RFTRTASVADYYAPIRTGTDIAFLGGVIHYLLANDKIQHEYVKNYTDFPFIVREDFAFND CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCEEEEECCCCCC GIYSGYNPDKHAYDKGTWDYERGDDGFVKLDPTLSHPRCVYNLMKQHYARYTPEMVEKTC CCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCHHHHHHHC GTPKDKFLKVCEMLASTAVPGRAGTILYALGWTHHSVGAQMIRTGAMVQLLLGNIGIAGG CCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCC GMNALRGHSNIQGLTDLGLMSNLLPGYMTLPSQAEQDYEAYIGKRATQPLRPNQLSYWKN CHHHHCCCCCCCCHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHCCCCCCCCHHHHHHH YRAFFVSFMKSWWGDAATAENNFAYDYLPKLDKPYDLLQTIELMAQGKMNGYICQGFNPL HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCH AAAPSKAKTAAALARLKWLVVMDPLATETSEFWKPHDDYNVVDPAAVQTEVFRLPTTCFA HCCCCHHHHHHHHHHHHEEEEECCHHHCHHHHCCCCCCCCCCCCHHHHHHHHHCCHHHHH EERGSLVNSGRVLQWHWQGADAPGEARSDLEIMSGIFLRLRAAYRKDGGKYPDPILNLTW HHHCCEECCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEC PYANPESPTPEELAMEFNGRALADLPDPKDPAKVLVKRGEQLAGFAQLKDDGTTASGCWI CCCCCCCCCHHHHHHHCCCEEEECCCCCCCHHHHHHHCCHHHHHHHHCCCCCCCCCCEEE FCGAWTAAGNQMGRRDNSDPTGIGQTLNWAWAWPANRRILYNRASCDTAGKPFDPTRKLI EEECHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEECCCCCCCCCCCCCHHHHH GWNGRAWSGADVPDYKADEAPETGMGPFIMNPEGVARFFARDGMNEGPFPEHYEPFETPL CCCCCCCCCCCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHCCCCCCCCCCCCCCCCCCC AANPLNPGNPRALNNPAARVFPDDRAAFGTPDKFPHTATTYRLTEHFHYWTKHARLNAIV CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHEEE QPQQFVEIGEDLAREVGVVHGDKVRVSSNRGYIVAVALVTKRIKPLMVEGRKVQTVGIPL CHHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEEHHHHHHHCCHHEECCCEEEEEEEEE HWGFKGLTKPGYLANTLTPSVGDGNSQTPEFKSFLVKVEKA ECCCCCCCCCCCCHHCCCCCCCCCCCCCHHHHHHHEEEECC >Mature Secondary Structure AGLAPTFGRGAMTNHWVDIKNADIILVMGGNAAEAHPCGFKWVTEAKAHRKARLIVVDP CCCCCCCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCEEEEEECC RFTRTASVADYYAPIRTGTDIAFLGGVIHYLLANDKIQHEYVKNYTDFPFIVREDFAFND CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCEEEEECCCCCC GIYSGYNPDKHAYDKGTWDYERGDDGFVKLDPTLSHPRCVYNLMKQHYARYTPEMVEKTC CCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCHHHHHHHC GTPKDKFLKVCEMLASTAVPGRAGTILYALGWTHHSVGAQMIRTGAMVQLLLGNIGIAGG CCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCC GMNALRGHSNIQGLTDLGLMSNLLPGYMTLPSQAEQDYEAYIGKRATQPLRPNQLSYWKN CHHHHCCCCCCCCHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHCCCCCCCCHHHHHHH YRAFFVSFMKSWWGDAATAENNFAYDYLPKLDKPYDLLQTIELMAQGKMNGYICQGFNPL HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCH AAAPSKAKTAAALARLKWLVVMDPLATETSEFWKPHDDYNVVDPAAVQTEVFRLPTTCFA HCCCCHHHHHHHHHHHHEEEEECCHHHCHHHHCCCCCCCCCCCCHHHHHHHHHCCHHHHH EERGSLVNSGRVLQWHWQGADAPGEARSDLEIMSGIFLRLRAAYRKDGGKYPDPILNLTW HHHCCEECCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEC PYANPESPTPEELAMEFNGRALADLPDPKDPAKVLVKRGEQLAGFAQLKDDGTTASGCWI CCCCCCCCCHHHHHHHCCCEEEECCCCCCCHHHHHHHCCHHHHHHHHCCCCCCCCCCEEE FCGAWTAAGNQMGRRDNSDPTGIGQTLNWAWAWPANRRILYNRASCDTAGKPFDPTRKLI EEECHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEECCCCCCCCCCCCCHHHHH GWNGRAWSGADVPDYKADEAPETGMGPFIMNPEGVARFFARDGMNEGPFPEHYEPFETPL CCCCCCCCCCCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHCCCCCCCCCCCCCCCCCCC AANPLNPGNPRALNNPAARVFPDDRAAFGTPDKFPHTATTYRLTEHFHYWTKHARLNAIV CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHEEE QPQQFVEIGEDLAREVGVVHGDKVRVSSNRGYIVAVALVTKRIKPLMVEGRKVQTVGIPL CHHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEEHHHHHHHCCHHEECCCEEEEEEEEE HWGFKGLTKPGYLANTLTPSVGDGNSQTPEFKSFLVKVEKA ECCCCCCCCCCCCHHCCCCCCCCCCCCCHHHHHHHEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8346018; 9278503; 8522521 [H]