BacMap

Definition	Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence.
Accession	NC_012721
Length	2,827,333

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The map label for this gene is phaB [H]

Identifier: 238024210

GI number: 238024210

Start: 952305

End: 953033

Strand: Direct

Name: phaB [H]

Synonym: bglu_2g07900

Alternate gene names: 238024210

Gene position: 952305-953033 (Clockwise)

Preceding gene: 238024209

Following gene: 238024211

Centisome position: 33.68

GC content: 68.45

Gene sequence:

>729_bases
ATGACGAAGCTCGCCATCGTGACGGGCGGCACCCGCGGGATCGGGCGCGCGATCGTCGACGCGCTGATCGCCGACGGCCA
CGCCGTGTACTTCACCTACCGATCGAATCCGGAACTGGCCGACGCGCTGGAGCGCGCGCATGACGGCGCGGCGCGCGGCT
TTCGGGTCGACGGCGGCGACTGGAACGCCGTGCAGGCGTTCGCCGACCACGTCAATGCCGAAGCGGCCGTCGAGGTGCTC
GTGAACAACGCGGGCATCAACGACGACGCGCTGCTGATCGGCCGTCCGTTTTCGCGCTACTGGGAAACGCTGCGGATCAA
CCTCGGCGCGACCATGGCGTTCTGCCACGCGTTCGGCGAAGGCATGCAGTCGCGCCGGCGAGGCGCGATCGTCAACGTGT
CGTCGATCGCTGCGCGCAAGCCCAAGACCGGCAACGGCGCATACGGTGCGTCGAAGGCGGCGATCGAGCGCTTCACCAAA
ACGCTGGCACTCGAGATGGCGCGCTTCGGCGTGCGCGTCAACGCGGTCGCGCCGGGGTTCGTGCGCTCCGACCTGTTCGA
GCGCTTTCTCGCTGCGCAGGACGCGGCGGCGTTCTACCGCCAGATTCCGATGCGCAAGATCCTCGAGCCCGAGCAGGTTG
CGCGCGCGGTCCTGCTGCTCGCGAACGGCGCGCTCGAAACGACCGGCAGCGTCGTCGATCTCGGCAATGGCGAGAACATC
AGTGGCTGA

Upstream 100 bases:

>100_bases
GCTTGCAGCAGGACGGCACGCGCACCACCGCGCACGTCGAGCTGCGGGATGCAAACGGCCGGGGCGTGATGGACGGCATC
CTCAGCTGGGAGCACGACGC

Downstream 100 bases:

>100_bases
CCCAGTGACTCAAGGAGAGTGGATCATGAAGGAAGACATCAAGAACATCGTCGCGCAAATCCTCTATCTGAGCGGCCCCG
AACAGGTGGCCGACTCCGCG

Product: Short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 241

Protein sequence:

>242_residues
MTKLAIVTGGTRGIGRAIVDALIADGHAVYFTYRSNPELADALERAHDGAARGFRVDGGDWNAVQAFADHVNAEAAVEVL
VNNAGINDDALLIGRPFSRYWETLRINLGATMAFCHAFGEGMQSRRRGAIVNVSSIAARKPKTGNGAYGASKAAIERFTK
TLALEMARFGVRVNAVAPGFVRSDLFERFLAAQDAAAFYRQIPMRKILEPEQVARAVLLLANGALETTGSVVDLGNGENI
SG

Sequences:

>Translated_242_residues
MTKLAIVTGGTRGIGRAIVDALIADGHAVYFTYRSNPELADALERAHDGAARGFRVDGGDWNAVQAFADHVNAEAAVEVL
VNNAGINDDALLIGRPFSRYWETLRINLGATMAFCHAFGEGMQSRRRGAIVNVSSIAARKPKTGNGAYGASKAAIERFTK
TLALEMARFGVRVNAVAPGFVRSDLFERFLAAQDAAAFYRQIPMRKILEPEQVARAVLLLANGALETTGSVVDLGNGENI
SG
>Mature_241_residues
TKLAIVTGGTRGIGRAIVDALIADGHAVYFTYRSNPELADALERAHDGAARGFRVDGGDWNAVQAFADHVNAEAAVEVLV
NNAGINDDALLIGRPFSRYWETLRINLGATMAFCHAFGEGMQSRRRGAIVNVSSIAARKPKTGNGAYGASKAAIERFTKT
LALEMARFGVRVNAVAPGFVRSDLFERFLAAQDAAAFYRQIPMRKILEPEQVARAVLLLANGALETTGSVVDLGNGENIS
G

Specific function: Fatty acid biosynthesis pathway; first reduction step. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI40254992, Length=221, Percent_Identity=35.2941176470588, Blast_Score=104, Evalue=6e-23,
Organism=Homo sapiens, GI7705925, Length=240, Percent_Identity=34.1666666666667, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI32483357, Length=245, Percent_Identity=32.6530612244898, Blast_Score=94, Evalue=7e-20,
Organism=Homo sapiens, GI15277342, Length=233, Percent_Identity=29.1845493562232, Blast_Score=88, Evalue=7e-18,
Organism=Homo sapiens, GI5031737, Length=250, Percent_Identity=31.2, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI31542939, Length=237, Percent_Identity=29.535864978903, Blast_Score=82, Evalue=5e-16,
Organism=Homo sapiens, GI33667109, Length=192, Percent_Identity=32.8125, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI19923817, Length=254, Percent_Identity=29.9212598425197, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI226371731, Length=195, Percent_Identity=25.6410256410256, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI109715829, Length=232, Percent_Identity=28.448275862069, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI20149619, Length=191, Percent_Identity=27.2251308900524, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI126723750, Length=250, Percent_Identity=26.8, Blast_Score=64, Evalue=1e-10,
Organism=Escherichia coli, GI1787335, Length=221, Percent_Identity=33.0316742081448, Blast_Score=110, Evalue=7e-26,
Organism=Escherichia coli, GI2367175, Length=246, Percent_Identity=33.739837398374, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1786812, Length=231, Percent_Identity=29.8701298701299, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI87082100, Length=254, Percent_Identity=30.7086614173228, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1790717, Length=226, Percent_Identity=22.5663716814159, Blast_Score=74, Evalue=6e-15,
Organism=Escherichia coli, GI1788459, Length=245, Percent_Identity=28.5714285714286, Blast_Score=74, Evalue=7e-15,
Organism=Escherichia coli, GI87082160, Length=190, Percent_Identity=28.4210526315789, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787820, Length=220, Percent_Identity=27.7272727272727, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI2367365, Length=224, Percent_Identity=32.1428571428571, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1787905, Length=229, Percent_Identity=25.3275109170306, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1789378, Length=230, Percent_Identity=30.8695652173913, Blast_Score=64, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI25147288, Length=238, Percent_Identity=31.5126050420168, Blast_Score=105, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI17555706, Length=247, Percent_Identity=31.1740890688259, Blast_Score=101, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI17562910, Length=239, Percent_Identity=28.0334728033473, Blast_Score=88, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI17560150, Length=247, Percent_Identity=27.1255060728745, Blast_Score=86, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17560676, Length=241, Percent_Identity=26.5560165975104, Blast_Score=84, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI17531453, Length=244, Percent_Identity=28.6885245901639, Blast_Score=84, Evalue=8e-17,
Organism=Caenorhabditis elegans, GI17562904, Length=244, Percent_Identity=30.327868852459, Blast_Score=81, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17560220, Length=247, Percent_Identity=27.9352226720648, Blast_Score=81, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI17562990, Length=247, Percent_Identity=27.9352226720648, Blast_Score=79, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17538480, Length=240, Percent_Identity=28.75, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17562908, Length=246, Percent_Identity=29.6747967479675, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17562906, Length=252, Percent_Identity=28.968253968254, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17555612, Length=216, Percent_Identity=32.4074074074074, Blast_Score=74, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI71994604, Length=263, Percent_Identity=29.277566539924, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI71994600, Length=264, Percent_Identity=27.6515151515151, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI115534694, Length=239, Percent_Identity=28.0334728033473, Blast_Score=74, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI17560332, Length=244, Percent_Identity=29.0983606557377, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI193204405, Length=244, Percent_Identity=26.6393442622951, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17561402, Length=232, Percent_Identity=25.8620689655172, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17551412, Length=240, Percent_Identity=27.5, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17559104, Length=239, Percent_Identity=26.3598326359833, Blast_Score=71, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI72000259, Length=245, Percent_Identity=30.6122448979592, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17563726, Length=193, Percent_Identity=29.0155440414508, Blast_Score=70, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17536025, Length=248, Percent_Identity=27.0161290322581, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17538486, Length=240, Percent_Identity=25.4166666666667, Blast_Score=70, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6322226, Length=192, Percent_Identity=33.3333333333333, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24639444, Length=239, Percent_Identity=30.1255230125523, Blast_Score=100, Evalue=1e-21,
Organism=Drosophila melanogaster, GI23397609, Length=243, Percent_Identity=33.3333333333333, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI24643142, Length=249, Percent_Identity=29.3172690763052, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI21357041, Length=232, Percent_Identity=30.1724137931034, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24640442, Length=195, Percent_Identity=30.2564102564103, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI21355319, Length=242, Percent_Identity=28.9256198347107, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI161076933, Length=185, Percent_Identity=29.1891891891892, Blast_Score=74, Evalue=7e-14,
Organism=Drosophila melanogaster, GI24584748, Length=185, Percent_Identity=29.1891891891892, Blast_Score=74, Evalue=8e-14,
Organism=Drosophila melanogaster, GI28571526, Length=190, Percent_Identity=31.0526315789474, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI28574402, Length=188, Percent_Identity=28.1914893617021, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24584744, Length=188, Percent_Identity=28.1914893617021, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24644337, Length=154, Percent_Identity=32.4675324675325, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24644339, Length=219, Percent_Identity=27.3972602739726, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI116007236, Length=229, Percent_Identity=28.3842794759825, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI21358495, Length=190, Percent_Identity=26.8421052631579, Blast_Score=64, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011283
- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: =1.1.1.36 [H]

Molecular weight: Translated: 25837; Mature: 25705

Theoretical pI: Translated: 9.04; Mature: 9.04

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKLAIVTGGTRGIGRAIVDALIADGHAVYFTYRSNPELADALERAHDGAARGFRVDGGD
CCEEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCCCCCEEECCCC
WNAVQAFADHVNAEAAVEVLVNNAGINDDALLIGRPFSRYWETLRINLGATMAFCHAFGE
CHHHHHHHHHCCHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHEECCCHHHHHHHHHHH
GMQSRRRGAIVNVSSIAARKPKTGNGAYGASKAAIERFTKTLALEMARFGVRVNAVAPGF
HHHHHHCCCEEEHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCEEEEECCCCH
VRSDLFERFLAAQDAAAFYRQIPMRKILEPEQVARAVLLLANGALETTGSVVDLGNGENI
HHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHCCCCCCCCCEEECCCCCCC
SG
CC
>Mature Secondary Structure 
TKLAIVTGGTRGIGRAIVDALIADGHAVYFTYRSNPELADALERAHDGAARGFRVDGGD
CEEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCCCCCEEECCCC
WNAVQAFADHVNAEAAVEVLVNNAGINDDALLIGRPFSRYWETLRINLGATMAFCHAFGE
CHHHHHHHHHCCHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHEECCCHHHHHHHHHHH
GMQSRRRGAIVNVSSIAARKPKTGNGAYGASKAAIERFTKTLALEMARFGVRVNAVAPGF
HHHHHHCCCEEEHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCEEEEECCCCH
VRSDLFERFLAAQDAAAFYRQIPMRKILEPEQVARAVLLLANGALETTGSVVDLGNGENI
HHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHCCCCCCCCCEEECCCCCCC
SG
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8566717 [H]