| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
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The map label for this gene is dltE [H]
Identifier: 238024111
GI number: 238024111
Start: 810086
End: 810865
Strand: Direct
Name: dltE [H]
Synonym: bglu_2g06820
Alternate gene names: 238024111
Gene position: 810086-810865 (Clockwise)
Preceding gene: 238024109
Following gene: 238024112
Centisome position: 28.65
GC content: 63.59
Gene sequence:
>780_bases ATGGCCACCCCGATCGATTTCACGCGTGCGCAGGTACTGATAACTGGCGGCGGCCAGGGCATCGGCCTGGCGCTTGCGAA GCGCTTCCTTGCGGTAGGCAGCCGCGTGCTCGTCACCGGCCGTCACGAGTCGAAGCTTGAGCAGGCAAGACGGGCTCATC GTGGCCTGGAGATCTTCGTCAACAACATCAGCAGTGCTGCTGGGCGCATCGAGTTGGCGACGCATGTGGCCGAGGCGATG CCGGGGCTCAACGTGCTTATCAACAACGCGGGCTACCAGCGAAGGGTCTCGCTAGCTGCCGACGACGCTCCGTGGAGTGA CTCGCAAGCCGAGATCGATACGCTGCTCTCCGGGCCTATCCACCTCACTCGGTTGCTGGTTCCGCTGCTGCTCGCGCACG GCGGCGCCGGCATGATCGTCAACGTCACATCAGGTGGTGCGTACTTTCCTCAACCCTTCGCTCCGGTCTACAGCGCCTGC AAGGCGGCGCTGCACAGCTTCACGGTCAATTTGCGATTCGCGATGTCGAAAACGGCCTATCGCGTCGTCGAACTGATTCC GCCTGCGGTGCAGACAGGCCTCGGCGGTACTGATGCTGGTCATGGGGCTCCGCTCGACGAATTTGCCGACTCGGTGTTCA AGCAGCTGAGCGTCGGCGAGCGCGACGAGATCGGCTTTGGCCCCACCGCGAGTCCTCGCTTCGAGCAGGCGGCGGCGCCG TATCGCGAAATGTTCCAGGAGTTCCGGACCCGCACGCCGGTTAAGCTCTACGGTGACTGA
Upstream 100 bases:
>100_bases GCTCATCCGTAGCTTCGCACGTTCGAACAACGCCCCTTTTGGTTGATGAATCAACTTCAAGAGAGTAGAGTAGTTGATAT ATCAACCGATGGAGCATGGC
Downstream 100 bases:
>100_bases CGCGTCGAATTCGATCATAGTTGACGCGTCGAAGCAAAGGAGCGACGCCTCACTATGAACAAGAATCGGCTTTCGGCTAG GGAGCAAGCGCTATGGCATG
Product: D-alanyl-lipoteichoic acid biosynthesis protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 259; Mature: 258
Protein sequence:
>259_residues MATPIDFTRAQVLITGGGQGIGLALAKRFLAVGSRVLVTGRHESKLEQARRAHRGLEIFVNNISSAAGRIELATHVAEAM PGLNVLINNAGYQRRVSLAADDAPWSDSQAEIDTLLSGPIHLTRLLVPLLLAHGGAGMIVNVTSGGAYFPQPFAPVYSAC KAALHSFTVNLRFAMSKTAYRVVELIPPAVQTGLGGTDAGHGAPLDEFADSVFKQLSVGERDEIGFGPTASPRFEQAAAP YREMFQEFRTRTPVKLYGD
Sequences:
>Translated_259_residues MATPIDFTRAQVLITGGGQGIGLALAKRFLAVGSRVLVTGRHESKLEQARRAHRGLEIFVNNISSAAGRIELATHVAEAM PGLNVLINNAGYQRRVSLAADDAPWSDSQAEIDTLLSGPIHLTRLLVPLLLAHGGAGMIVNVTSGGAYFPQPFAPVYSAC KAALHSFTVNLRFAMSKTAYRVVELIPPAVQTGLGGTDAGHGAPLDEFADSVFKQLSVGERDEIGFGPTASPRFEQAAAP YREMFQEFRTRTPVKLYGD >Mature_258_residues ATPIDFTRAQVLITGGGQGIGLALAKRFLAVGSRVLVTGRHESKLEQARRAHRGLEIFVNNISSAAGRIELATHVAEAMP GLNVLINNAGYQRRVSLAADDAPWSDSQAEIDTLLSGPIHLTRLLVPLLLAHGGAGMIVNVTSGGAYFPQPFAPVYSACK AALHSFTVNLRFAMSKTAYRVVELIPPAVQTGLGGTDAGHGAPLDEFADSVFKQLSVGERDEIGFGPTASPRFEQAAAPY REMFQEFRTRTPVKLYGD
Specific function: Unknown
COG id: COG3967
COG function: function code M; Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein)
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Escherichia coli, GI1787820, Length=204, Percent_Identity=29.4117647058824, Blast_Score=79, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17559104, Length=202, Percent_Identity=29.7029702970297, Blast_Score=74, Evalue=7e-14, Organism=Caenorhabditis elegans, GI17560150, Length=199, Percent_Identity=28.643216080402, Blast_Score=67, Evalue=8e-12, Organism=Caenorhabditis elegans, GI17551412, Length=213, Percent_Identity=28.169014084507, Blast_Score=67, Evalue=9e-12, Organism=Caenorhabditis elegans, GI17538486, Length=216, Percent_Identity=29.1666666666667, Blast_Score=65, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17565030, Length=222, Percent_Identity=30.1801801801802, Blast_Score=65, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6323882, Length=198, Percent_Identity=26.2626262626263, Blast_Score=62, Evalue=7e-11, Organism=Drosophila melanogaster, GI24580925, Length=182, Percent_Identity=31.3186813186813, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI23397609, Length=192, Percent_Identity=30.2083333333333, Blast_Score=67, Evalue=1e-11,
Paralogues:
None
Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 27669; Mature: 27538
Theoretical pI: Translated: 8.47; Mature: 8.47
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATPIDFTRAQVLITGGGQGIGLALAKRFLAVGSRVLVTGRHESKLEQARRAHRGLEIFV CCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHCCHHHHH NNISSAAGRIELATHVAEAMPGLNVLINNAGYQRRVSLAADDAPWSDSQAEIDTLLSGPI HHHHHHCCHHHHHHHHHHHCCCCEEEECCCCCCEEEEEEECCCCCCCCHHHHHHHHCCHH HLTRLLVPLLLAHGGAGMIVNVTSGGAYFPQPFAPVYSACKAALHSFTVNLRFAMSKTAY HHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHEEEEEHHHHHHH RVVELIPPAVQTGLGGTDAGHGAPLDEFADSVFKQLSVGERDEIGFGPTASPRFEQAAAP HHHHHCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCH YREMFQEFRTRTPVKLYGD HHHHHHHHHHCCCEEECCC >Mature Secondary Structure ATPIDFTRAQVLITGGGQGIGLALAKRFLAVGSRVLVTGRHESKLEQARRAHRGLEIFV CCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHCCHHHHH NNISSAAGRIELATHVAEAMPGLNVLINNAGYQRRVSLAADDAPWSDSQAEIDTLLSGPI HHHHHHCCHHHHHHHHHHHCCCCEEEECCCCCCEEEEEEECCCCCCCCHHHHHHHHCCHH HLTRLLVPLLLAHGGAGMIVNVTSGGAYFPQPFAPVYSACKAALHSFTVNLRFAMSKTAY HHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHEEEEEHHHHHHH RVVELIPPAVQTGLGGTDAGHGAPLDEFADSVFKQLSVGERDEIGFGPTASPRFEQAAAP HHHHHCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCH YREMFQEFRTRTPVKLYGD HHHHHHHHHHCCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7934828; 9384377; 7797557 [H]