| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
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The map label for this gene is 238024027
Identifier: 238024027
GI number: 238024027
Start: 697740
End: 699017
Strand: Reverse
Name: 238024027
Synonym: bglu_2g05810
Alternate gene names: NA
Gene position: 699017-697740 (Counterclockwise)
Preceding gene: 238024028
Following gene: 238024025
Centisome position: 24.72
GC content: 75.04
Gene sequence:
>1278_bases GTGTCAGACGACGCCGCGCTGGCGAGCGCCTATCTCGCCTACCTGCACACCCCGAACGACGACACCGGCCTGGCGCTCGC GCGCGGCCTGCGCGAGGCCGGCCATGCCGCCGCCGCGTCCGCGCAGGCCACGCGCTGCGCCGCCGATGCGGCCACGCCGC TCGCGCTCGCGCTGGCCGGCATCGAGATGAACCACCTGGGCCGCTTCGCCGAGGCCGAGGCGCTGCTCGCGCGCGCCGAG GCCGGCCTCGGCGGCGACCCGAACCGCTACGTGGTGCGCTTCGAGCAGACCATCGCGCGCTACGGCCAGGGCCGCTATCG CGACGCGCACCGGCTGTTCCGCGAGCTGCGCGACGCGCCGCACCGCGCGCGCGTGGTCGAGACGCTCTATCCGGGCCACG GCGGCAGCTTCGACTGGGCCGAGCGCAAGTTCCTCGGCCATCACGATCCGGTGGCCGGCAAGCGCGTGCTGGTGATGATG GAAGGCGGCGCCGGCGACCTGTTCATGCATTCGCGCTACCTCGCCTGCCTGCGCGAGGAAGGCGCGGCCTCGGTGGACGT GCAGGTTGCCGAGGCCGCGCGCGGCGTGCTGCGCGAGGACGGCTTCGTGCGCGAGAGCGGGCCGCATGTGGGTGCGCTGG CCGACCAGTGCGATTGCGTGACCTGGCTGTTCAATTTGTTCGCGCGCTACCAGACCAGCCCCTACCAGCCGCGCTTCGAC ACGCCCTACCTCGACACGCCGCCGCCCTCGGCGCTGCCCGAGGCCGTGCGTGCCGCGCTCGAGGCGCCGGGGCTCGCGCG CGTCGGCCTGGTCTGGCGCAGCCAGTCCGCCGTGCGCCACGAGCCCTATCGTTCGCTCGCGCTCGACGCGCTCGCGCCGC TTCTCGCGCAGCCGGGCTGCCGCTTCTATTCGCTGCAGGTGGGCGAGGCCGGCCAGGCGCGCGGCGAGGCCGAGCGCGCG GCGCTGGCCGCGCACCGCGTGGTCGATCTGGCGCCGGCGCTGCACCGCTTCGCCGACACGGCCGCCGTGCTCGGCCAGCT CGACCTGCTGATCTCGATCGACACCGGCACCGCGCATCTGGCCGCGGCGATGGGCCGGCCCGTCTGGCTGCTGCTCTCGC ACGCGGGCGACAGCCGCTGGCTCGACCACGTCGATTTCACGCCCTGGTATCCGTCCATGCGGCTGTTCCGCCAGCCGGTG CTGGGCGATTGGCGCACGCCGGTGGCCGAGGCGGCCGCGGCGCTGGGCGCGGGGGACCATGCAGGGCGGGCAGCCTGA
Upstream 100 bases:
>100_bases GCTGCCGATCGGCGCATCGCAACCGGTGCTCGCGCTGCACGCCTGACGCTCCGCCGCGGCCGGACGCGGGGGCTCGGCAA GGCGCCCGAGGACAACCCAC
Downstream 100 bases:
>100_bases AGCGGCGGCCCGCACCCTCACCGCCGGCTCCAGCGCGGCCCCGCCTGGTTGCATCCGCAACAAAATGACGACGGCCCGCG CGCACGCGGGCCGTCGGCCT
Product: TPR repeat-containing protein
Products: NA
Alternate protein names: TPR Domain-Containing Protein; Tetratricopeptide TPR_2 Repeat Protein; TPR Domain Protein; Tetratricopeptide Repeat-Containing Protein; TPR Repeat Protein; Tetratricopeptide Repeat Family Protein; TPR Repeat Containing Protein; FlbA Protein; Sulfotransferase; TPR Repeat; Exostosin Family Protein; Tetratricopeptide Tpr_2 Repeat Protein; Methyltransferase Type; Glycosyltransferase Family 9 Tpr Repeat Domain; TPR/Sulfotransferase Domain-Containing Protein; Flagellin Protein FlbA; O-Linked N-Acetylglucosamine Transferase; Tetratricopeptide Repeat Domain Protein
Number of amino acids: Translated: 425; Mature: 424
Protein sequence:
>425_residues MSDDAALASAYLAYLHTPNDDTGLALARGLREAGHAAAASAQATRCAADAATPLALALAGIEMNHLGRFAEAEALLARAE AGLGGDPNRYVVRFEQTIARYGQGRYRDAHRLFRELRDAPHRARVVETLYPGHGGSFDWAERKFLGHHDPVAGKRVLVMM EGGAGDLFMHSRYLACLREEGAASVDVQVAEAARGVLREDGFVRESGPHVGALADQCDCVTWLFNLFARYQTSPYQPRFD TPYLDTPPPSALPEAVRAALEAPGLARVGLVWRSQSAVRHEPYRSLALDALAPLLAQPGCRFYSLQVGEAGQARGEAERA ALAAHRVVDLAPALHRFADTAAVLGQLDLLISIDTGTAHLAAAMGRPVWLLLSHAGDSRWLDHVDFTPWYPSMRLFRQPV LGDWRTPVAEAAAALGAGDHAGRAA
Sequences:
>Translated_425_residues MSDDAALASAYLAYLHTPNDDTGLALARGLREAGHAAAASAQATRCAADAATPLALALAGIEMNHLGRFAEAEALLARAE AGLGGDPNRYVVRFEQTIARYGQGRYRDAHRLFRELRDAPHRARVVETLYPGHGGSFDWAERKFLGHHDPVAGKRVLVMM EGGAGDLFMHSRYLACLREEGAASVDVQVAEAARGVLREDGFVRESGPHVGALADQCDCVTWLFNLFARYQTSPYQPRFD TPYLDTPPPSALPEAVRAALEAPGLARVGLVWRSQSAVRHEPYRSLALDALAPLLAQPGCRFYSLQVGEAGQARGEAERA ALAAHRVVDLAPALHRFADTAAVLGQLDLLISIDTGTAHLAAAMGRPVWLLLSHAGDSRWLDHVDFTPWYPSMRLFRQPV LGDWRTPVAEAAAALGAGDHAGRAA >Mature_424_residues SDDAALASAYLAYLHTPNDDTGLALARGLREAGHAAAASAQATRCAADAATPLALALAGIEMNHLGRFAEAEALLARAEA GLGGDPNRYVVRFEQTIARYGQGRYRDAHRLFRELRDAPHRARVVETLYPGHGGSFDWAERKFLGHHDPVAGKRVLVMME GGAGDLFMHSRYLACLREEGAASVDVQVAEAARGVLREDGFVRESGPHVGALADQCDCVTWLFNLFARYQTSPYQPRFDT PYLDTPPPSALPEAVRAALEAPGLARVGLVWRSQSAVRHEPYRSLALDALAPLLAQPGCRFYSLQVGEAGQARGEAERAA LAAHRVVDLAPALHRFADTAAVLGQLDLLISIDTGTAHLAAAMGRPVWLLLSHAGDSRWLDHVDFTPWYPSMRLFRQPVL GDWRTPVAEAAAALGAGDHAGRAA
Specific function: Unknown
COG id: COG0457
COG function: function code R; FOG: TPR repeat
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45769; Mature: 45638
Theoretical pI: Translated: 6.66; Mature: 6.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDDAALASAYLAYLHTPNDDTGLALARGLREAGHAAAASAQATRCAADAATPLALALAG CCCHHHHHHHHHHHEECCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHC IEMNHLGRFAEAEALLARAEAGLGGDPNRYVVRFEQTIARYGQGRYRDAHRLFRELRDAP CCHHHHCCHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHCCCCCHHHHHHHHHHHCCC HRARVVETLYPGHGGSFDWAERKFLGHHDPVAGKRVLVMMEGGAGDLFMHSRYLACLREE HHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHC GAASVDVQVAEAARGVLREDGFVRESGPHVGALADQCDCVTWLFNLFARYQTSPYQPRFD CCCEEEEEHHHHHHHHHHCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC TPYLDTPPPSALPEAVRAALEAPGLARVGLVWRSQSAVRHEPYRSLALDALAPLLAQPGC CCCCCCCCCHHHHHHHHHHHCCCCCEEEHEEECCCCHHHHCHHHHHHHHHHHHHHCCCCC RFYSLQVGEAGQARGEAERAALAAHRVVDLAPALHRFADTAAVLGQLDLLISIDTGTAHL EEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCHHHH AAAMGRPVWLLLSHAGDSRWLDHVDFTPWYPSMRLFRQPVLGDWRTPVAEAAAALGAGDH HHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHCCCCC AGRAA CCCCC >Mature Secondary Structure SDDAALASAYLAYLHTPNDDTGLALARGLREAGHAAAASAQATRCAADAATPLALALAG CCHHHHHHHHHHHEECCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHC IEMNHLGRFAEAEALLARAEAGLGGDPNRYVVRFEQTIARYGQGRYRDAHRLFRELRDAP CCHHHHCCHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHCCCCCHHHHHHHHHHHCCC HRARVVETLYPGHGGSFDWAERKFLGHHDPVAGKRVLVMMEGGAGDLFMHSRYLACLREE HHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHC GAASVDVQVAEAARGVLREDGFVRESGPHVGALADQCDCVTWLFNLFARYQTSPYQPRFD CCCEEEEEHHHHHHHHHHCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC TPYLDTPPPSALPEAVRAALEAPGLARVGLVWRSQSAVRHEPYRSLALDALAPLLAQPGC CCCCCCCCCHHHHHHHHHHHCCCCCEEEHEEECCCCHHHHCHHHHHHHHHHHHHHCCCCC RFYSLQVGEAGQARGEAERAALAAHRVVDLAPALHRFADTAAVLGQLDLLISIDTGTAHL EEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCHHHH AAAMGRPVWLLLSHAGDSRWLDHVDFTPWYPSMRLFRQPVLGDWRTPVAEAAAALGAGDH HHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHCCCCC AGRAA CCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA