| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
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The map label for this gene is 238023992
Identifier: 238023992
GI number: 238023992
Start: 654988
End: 656931
Strand: Direct
Name: 238023992
Synonym: bglu_2g05460
Alternate gene names: NA
Gene position: 654988-656931 (Clockwise)
Preceding gene: 238023991
Following gene: 238023995
Centisome position: 23.17
GC content: 59.72
Gene sequence:
>1944_bases ATGTCTCGACGTGCCCTTCTTGCCGCAGGAGGTGCGGTGGCCGGAATGGGTTTGGTTCCGCCTCTGATGCGCAGGAGCCT GGCGGCAGCCGTGGCAACTGCTACGGCGAACTCTCCGCAATTCAACCTGGAGCAATTTGCCGAACTGCGCTTCGGGATGT TCAACCACTTCAATATGGGAACATTCACCAACGAGGAGTGGGCGACCCCGAACCAGAATCCCATGACTTTCGCGCCGCCG AGCGTGAACTGCGCCCAATGGGCCGCAGCCGCGAAATCGGCCAAGATGAGCTACGGCGTCTTGACCACCAAGCATCACGA CGGTTTCTGCTTATGGCCTTCGAAATACAACAGTTACAACGTTGCCAACAGCGGGTATCGGCACGACATCGTCAGTCAGT ACGTCACCGCATTCCGCGAGGCCGGACTCAAGGTCGGCCTGTATTTTTCGATATGGGATCGCACCTACCCGGTGCAGGCC TACGGCGGACACGTCAGCGACACGACCCAGGCAATCCAGCCGTCGAACATCACTTACATCCTCAATCAGATCCGCGAGTT GCTGACGAATTACGGGCAGATCGATATCTGGGTGAATGATGGGTATGCCTGGCAGATGGGCCAGCAGCAGGTGCCGTATC AGCAGGTACGAGAACTCGTCAAATCCCTGCAGCCGAACATCATCATGATCGACCACGGCGCATTGACCGTTCCGTTCCTT GGCGATGCCATCTACTTCGAGGAGCCGATGGGCGTGACGTCGCCGGCCAACAACACCTATGCGTCGGCGCAGGGAACGAC CATCACGCCTGCCGGTTGGTTCTGGCATCCGCAGGACCCGACTACGGACCCGATGAGCCAGGCCGACATCGTCAACCATC TCACCACTCTGGAGCCGCGATGGACGTCATTCCTGTTGAACTGTCCGCCGAACCGCTCCGGCCTGCTCGACGATAATATC GTCACCAGGCTTCAAGAAGTGGGGGCCGCCTGGTCGCCCAACTCCAGTCGTCCCAAGCTTCCCACCCAGCCCAATCGATG CGAGCATCCCGTCACGCCGGTGGCTGCCTATGCGAGTGCCTGGCACAGCGGGGAAGGTCCGATGCGCGCGATCGACGGCT ATTCCGACAAGGACGCCGAAACCTGCTGGTCGACCTGGTCCAGTGACGGCAGTCTCACCCTGCCGCAGTCGATCACGATA GATCTCGGCGGCACGTATAGCGGCATTGGCGCCTTGGAGTATCTGCCCAAGCAGTTCAATCGCAACAACTCGACCGACGG CGACATTACCTCGTTCCGGATTCTCACCAGCACCGACGGCGTCAGCTTCACCCAGGTCGCATCCGGAAACTGGGATGCCG ACCACACCATGAAATATGTCGAATGGCCGGCTGCCAATGCCGCCTATGTGCGGATAGAAGCGCAGGCGGGAACGGGCGGC TACTGCAACATCAATAATCTACGAGTCGGCGGCCGGACAACGAAGCCGGCACTCGTGGCCGACACCACCTTCCCGGTTGC GAACAAGCAATACAGGATCATCAACGCCAACAGCATGAAGGCGCTGGATGTGGGCGATGGGCAGGTCTCGAACGCCACGC CGGTCGTGCAGAACCCGGTCGCTTCCTCGCCGACGCAGTACTGGACGTTCGAGCGCGACGTCAGCGGTTACTTCAAGATT CGCAACGTGTCGTCCAACAAGCTGCTGGAGATTGGCAACCTGTCCAGGGCGAACAATGCCGTGGCTCAGGTATGGGATGA CGCGACCGCTCCGCAGCAGGAGTGGTCCGTGACTCGCCTCAGCAGTGCCAACTTCATGCTGTTGAACCGCTTGAGTTTCC TGTCGCTGAACGTGAAGGATGGTTCCCCCAGCACCGGAGCGACCGTCAATCAGTACGAGTTCAATCAAGCCGCTCAGGAA ATGTGGCAGATCTCGGCCGTATAG
Upstream 100 bases:
>100_bases CATGCCGGCAGGCGCCGGCCTTCGACGTTCCGCACCACATTGGTAACGGCAATATCAAATCGAAAAAATTTCGAGGAAAG AGAGAATGAATAATTTCAAA
Downstream 100 bases:
>100_bases GTCGAGCGCCATGCCGCACGAGCGCTCGACACGTCCTGTCCGCTCATGAGGCTAGGGCTCGGGCAATCTGATTCCCACCA GCCGTAACGGGAATCAGATT
Product: alpha-L-fucosidase
Products: NA
Alternate protein names: Glycoside Hydrolase Family; Coagulation Factor 5/8 Type Domain Protein; Glycosyl Hydrolase; Alpha-1 3/4-Fucosidase; Calx-Beta Domain-Containing Protein; Ricin B Lectin; Alpha-L-Fucosidase Protein; Lipoprotein; Exporte Hydrolase; Alpha-N-Arabinofuranosidase; Alpha-L-Fucosidase Family Protein; Exported Fucosidase; Coagulation Factor 5/8 Type Domain-Containing Protein; Alpha-L-Fucosidase-Like Protein; Glycoside Hydrolase Family Alpha-L-Fucosidase; Ig Domain-Containing; Twin-Arginine Translocation Pathway Signal; QXW Lectin Repeat-Containing Protein; Exported Alpha-L-Fucosidase Protein; Fucosidase; Glycosyl Hydrolase Alpha-L-Fucosidase; DS Domain-Containing Protein; Glycoside Hydrolase
Number of amino acids: Translated: 647; Mature: 646
Protein sequence:
>647_residues MSRRALLAAGGAVAGMGLVPPLMRRSLAAAVATATANSPQFNLEQFAELRFGMFNHFNMGTFTNEEWATPNQNPMTFAPP SVNCAQWAAAAKSAKMSYGVLTTKHHDGFCLWPSKYNSYNVANSGYRHDIVSQYVTAFREAGLKVGLYFSIWDRTYPVQA YGGHVSDTTQAIQPSNITYILNQIRELLTNYGQIDIWVNDGYAWQMGQQQVPYQQVRELVKSLQPNIIMIDHGALTVPFL GDAIYFEEPMGVTSPANNTYASAQGTTITPAGWFWHPQDPTTDPMSQADIVNHLTTLEPRWTSFLLNCPPNRSGLLDDNI VTRLQEVGAAWSPNSSRPKLPTQPNRCEHPVTPVAAYASAWHSGEGPMRAIDGYSDKDAETCWSTWSSDGSLTLPQSITI DLGGTYSGIGALEYLPKQFNRNNSTDGDITSFRILTSTDGVSFTQVASGNWDADHTMKYVEWPAANAAYVRIEAQAGTGG YCNINNLRVGGRTTKPALVADTTFPVANKQYRIINANSMKALDVGDGQVSNATPVVQNPVASSPTQYWTFERDVSGYFKI RNVSSNKLLEIGNLSRANNAVAQVWDDATAPQQEWSVTRLSSANFMLLNRLSFLSLNVKDGSPSTGATVNQYEFNQAAQE MWQISAV
Sequences:
>Translated_647_residues MSRRALLAAGGAVAGMGLVPPLMRRSLAAAVATATANSPQFNLEQFAELRFGMFNHFNMGTFTNEEWATPNQNPMTFAPP SVNCAQWAAAAKSAKMSYGVLTTKHHDGFCLWPSKYNSYNVANSGYRHDIVSQYVTAFREAGLKVGLYFSIWDRTYPVQA YGGHVSDTTQAIQPSNITYILNQIRELLTNYGQIDIWVNDGYAWQMGQQQVPYQQVRELVKSLQPNIIMIDHGALTVPFL GDAIYFEEPMGVTSPANNTYASAQGTTITPAGWFWHPQDPTTDPMSQADIVNHLTTLEPRWTSFLLNCPPNRSGLLDDNI VTRLQEVGAAWSPNSSRPKLPTQPNRCEHPVTPVAAYASAWHSGEGPMRAIDGYSDKDAETCWSTWSSDGSLTLPQSITI DLGGTYSGIGALEYLPKQFNRNNSTDGDITSFRILTSTDGVSFTQVASGNWDADHTMKYVEWPAANAAYVRIEAQAGTGG YCNINNLRVGGRTTKPALVADTTFPVANKQYRIINANSMKALDVGDGQVSNATPVVQNPVASSPTQYWTFERDVSGYFKI RNVSSNKLLEIGNLSRANNAVAQVWDDATAPQQEWSVTRLSSANFMLLNRLSFLSLNVKDGSPSTGATVNQYEFNQAAQE MWQISAV >Mature_646_residues SRRALLAAGGAVAGMGLVPPLMRRSLAAAVATATANSPQFNLEQFAELRFGMFNHFNMGTFTNEEWATPNQNPMTFAPPS VNCAQWAAAAKSAKMSYGVLTTKHHDGFCLWPSKYNSYNVANSGYRHDIVSQYVTAFREAGLKVGLYFSIWDRTYPVQAY GGHVSDTTQAIQPSNITYILNQIRELLTNYGQIDIWVNDGYAWQMGQQQVPYQQVRELVKSLQPNIIMIDHGALTVPFLG DAIYFEEPMGVTSPANNTYASAQGTTITPAGWFWHPQDPTTDPMSQADIVNHLTTLEPRWTSFLLNCPPNRSGLLDDNIV TRLQEVGAAWSPNSSRPKLPTQPNRCEHPVTPVAAYASAWHSGEGPMRAIDGYSDKDAETCWSTWSSDGSLTLPQSITID LGGTYSGIGALEYLPKQFNRNNSTDGDITSFRILTSTDGVSFTQVASGNWDADHTMKYVEWPAANAAYVRIEAQAGTGGY CNINNLRVGGRTTKPALVADTTFPVANKQYRIINANSMKALDVGDGQVSNATPVVQNPVASSPTQYWTFERDVSGYFKIR NVSSNKLLEIGNLSRANNAVAQVWDDATAPQQEWSVTRLSSANFMLLNRLSFLSLNVKDGSPSTGATVNQYEFNQAAQEM WQISAV
Specific function: Unknown
COG id: COG3669
COG function: function code G; Alpha-L-fucosidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Drosophila melanogaster, GI24662717, Length=100, Percent_Identity=41, Blast_Score=67, Evalue=4e-11, Organism=Drosophila melanogaster, GI78706642, Length=100, Percent_Identity=41, Blast_Score=67, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 71025; Mature: 70894
Theoretical pI: Translated: 5.97; Mature: 5.97
Prosite motif: PS50022 FA58C_3 ; PS50231 RICIN_B_LECTIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRRALLAAGGAVAGMGLVPPLMRRSLAAAVATATANSPQFNLEQFAELRFGMFNHFNMG CCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCC TFTNEEWATPNQNPMTFAPPSVNCAQWAAAAKSAKMSYGVLTTKHHDGFCLWPSKYNSYN CCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHCCEEECEEEEECCCCEEECCCCCCCCC VANSGYRHDIVSQYVTAFREAGLKVGLYFSIWDRTYPVQAYGGHVSDTTQAIQPSNITYI CCCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHCCCCCHHHH LNQIRELLTNYGQIDIWVNDGYAWQMGQQQVPYQQVRELVKSLQPNIIMIDHGALTVPFL HHHHHHHHHCCCEEEEEECCCEEEECCCCCCCHHHHHHHHHHCCCCEEEEECCCEEECCC GDAIYFEEPMGVTSPANNTYASAQGTTITPAGWFWHPQDPTTDPMSQADIVNHLTTLEPR CCEEEEECCCCCCCCCCCCEECCCCCEECCCCCEECCCCCCCCCCHHHHHHHHHHCCCCC WTSFLLNCPPNRSGLLDDNIVTRLQEVGAAWSPNSSRPKLPTQPNRCEHPVTPVAAYASA HHEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH WHSGEGPMRAIDGYSDKDAETCWSTWSSDGSLTLPQSITIDLGGTYSGIGALEYLPKQFN HHCCCCCCEEECCCCCCCHHHHHHHCCCCCCEECCCEEEEEECCCCCCHHHHHHHHHHHC RNNSTDGDITSFRILTSTDGVSFTQVASGNWDADHTMKYVEWPAANAAYVRIEAQAGTGG CCCCCCCCEEEEEEEECCCCCEEEEEECCCCCHHHCEEEEECCCCCEEEEEEEEECCCCC YCNINNLRVGGRTTKPALVADTTFPVANKQYRIINANSMKALDVGDGQVSNATPVVQNPV EEECCCEEECCCCCCCEEEEECCCCCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCC ASSPTQYWTFERDVSGYFKIRNVSSNKLLEIGNLSRANNAVAQVWDDATAPQQEWSVTRL CCCCCEEEEEECCCCCEEEEEECCCCCEEEECCCCCCCCHHHHHHCCCCCCHHHCCEEEE SSANFMLLNRLSFLSLNVKDGSPSTGATVNQYEFNQAAQEMWQISAV CCCCEEEEECEEEEEEEECCCCCCCCCEECHHHHHHHHHHHHHHCCC >Mature Secondary Structure SRRALLAAGGAVAGMGLVPPLMRRSLAAAVATATANSPQFNLEQFAELRFGMFNHFNMG CCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCC TFTNEEWATPNQNPMTFAPPSVNCAQWAAAAKSAKMSYGVLTTKHHDGFCLWPSKYNSYN CCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHCCEEECEEEEECCCCEEECCCCCCCCC VANSGYRHDIVSQYVTAFREAGLKVGLYFSIWDRTYPVQAYGGHVSDTTQAIQPSNITYI CCCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHCCCCCHHHH LNQIRELLTNYGQIDIWVNDGYAWQMGQQQVPYQQVRELVKSLQPNIIMIDHGALTVPFL HHHHHHHHHCCCEEEEEECCCEEEECCCCCCCHHHHHHHHHHCCCCEEEEECCCEEECCC GDAIYFEEPMGVTSPANNTYASAQGTTITPAGWFWHPQDPTTDPMSQADIVNHLTTLEPR CCEEEEECCCCCCCCCCCCEECCCCCEECCCCCEECCCCCCCCCCHHHHHHHHHHCCCCC WTSFLLNCPPNRSGLLDDNIVTRLQEVGAAWSPNSSRPKLPTQPNRCEHPVTPVAAYASA HHEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH WHSGEGPMRAIDGYSDKDAETCWSTWSSDGSLTLPQSITIDLGGTYSGIGALEYLPKQFN HHCCCCCCEEECCCCCCCHHHHHHHCCCCCCEECCCEEEEEECCCCCCHHHHHHHHHHHC RNNSTDGDITSFRILTSTDGVSFTQVASGNWDADHTMKYVEWPAANAAYVRIEAQAGTGG CCCCCCCCEEEEEEEECCCCCEEEEEECCCCCHHHCEEEEECCCCCEEEEEEEEECCCCC YCNINNLRVGGRTTKPALVADTTFPVANKQYRIINANSMKALDVGDGQVSNATPVVQNPV EEECCCEEECCCCCCCEEEEECCCCCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCC ASSPTQYWTFERDVSGYFKIRNVSSNKLLEIGNLSRANNAVAQVWDDATAPQQEWSVTRL CCCCCEEEEEECCCCCEEEEEECCCCCEEEECCCCCCCCHHHHHHCCCCCCHHHCCEEEE SSANFMLLNRLSFLSLNVKDGSPSTGATVNQYEFNQAAQEMWQISAV CCCCEEEEECEEEEEEEECCCCCCCCCEECHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA