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The map label for this gene is yisR [H]

Identifier: 238023987

GI number: 238023987

Start: 648834

End: 649658

Strand: Direct

Name: yisR [H]

Synonym: bglu_2g05410

Alternate gene names: 238023987

Gene position: 648834-649658 (Clockwise)

Preceding gene: 238023982

Following gene: 238023989

Centisome position: 22.95

GC content: 64.48

Gene sequence:

>825_bases
ATGCAACTCAGGGTTTCGGTGCAGTCGTCGATACGCGCGCAGAACGGCGGACTTTTCGTTTCGAAAAGTGCCGATTGGGT
CCATCCGCAGCGCAGGCTCGAGTCATACGAGCTGGTGTTCGTGCGCCAGGGCGTGCTGCACCTGCGTGAAGACGACACGG
AGTTCGAGGTCCAGCCGGGCGAGGCGCTGCTGCTTTGGCCGCATCGGCGCCATGGGGGCACCCGCGCGGCCGGCCGCGGG
CTCAAGTTCTACTGGGTGCATTTCACGCTGGCGTCCGGCACGGAAGACGACCTGCCGGACCCGTTGCAGGTGCTCCAGCA
CACACGCGTCGCGCGCCCTGACCAGATGAGCGCGCTGTTCCGCCAGTTGGTGAACGACCAGGAACTGTTCGGCGCCCGGT
CGTCCACGCTTGCGCCCATCATTGCGCTGATGCTCTGCGAGCTGGCGCGCTCGGAGAATGCCGTGGCGCAACAGGCCGGT
GCGGCTTCCGCACTCGCGGCCAAGGCCGAAATGGTCATCCAGAACAAATTCGCCGGCGACATCTCGGCGTCCACCATCGC
CGACGAGTTGCACTGCAATCCCGACTATCTGGGGCGCGTGTTCCGCCGCGCCTATGGAAGAACGCTCACCGAGGCCTTGC
ACGCGCGGCGTGTGCGCCATGCCGCCATGCTGCTCGCGGAGACCGGAAAGAGCATCGGTGAAATCGGACAATTGTGCGGG
TTCAGCGATCCGGCCTATTTTCGACGCATCTTTTCTCGCTACCAGGAAATGACGCCTGGCGCCTGGCGCGCATTGCATAC
CCGCACGCACATGAACCACACCTAG

Upstream 100 bases:

>100_bases
CACAAGCCACAAATCAACATCAATGGAGACGATTCCGACTATCATCCCTCTCGTCGCCGGTCGATGACCATCGGCCGGGC
ATGCGGCATGGAGCGGGAGT

Downstream 100 bases:

>100_bases
CGCGGCGGCGTGACGGGACGATCCGGCACGGCCGGCTGGTTCGGACGGGAGCGTGAGCCGAAGCCAGCCAATCCGACCGC
CGGGCCGTTGGGAGCCCGCC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 274; Mature: 274

Protein sequence:

>274_residues
MQLRVSVQSSIRAQNGGLFVSKSADWVHPQRRLESYELVFVRQGVLHLREDDTEFEVQPGEALLLWPHRRHGGTRAAGRG
LKFYWVHFTLASGTEDDLPDPLQVLQHTRVARPDQMSALFRQLVNDQELFGARSSTLAPIIALMLCELARSENAVAQQAG
AASALAAKAEMVIQNKFAGDISASTIADELHCNPDYLGRVFRRAYGRTLTEALHARRVRHAAMLLAETGKSIGEIGQLCG
FSDPAYFRRIFSRYQEMTPGAWRALHTRTHMNHT

Sequences:

>Translated_274_residues
MQLRVSVQSSIRAQNGGLFVSKSADWVHPQRRLESYELVFVRQGVLHLREDDTEFEVQPGEALLLWPHRRHGGTRAAGRG
LKFYWVHFTLASGTEDDLPDPLQVLQHTRVARPDQMSALFRQLVNDQELFGARSSTLAPIIALMLCELARSENAVAQQAG
AASALAAKAEMVIQNKFAGDISASTIADELHCNPDYLGRVFRRAYGRTLTEALHARRVRHAAMLLAETGKSIGEIGQLCG
FSDPAYFRRIFSRYQEMTPGAWRALHTRTHMNHT
>Mature_274_residues
MQLRVSVQSSIRAQNGGLFVSKSADWVHPQRRLESYELVFVRQGVLHLREDDTEFEVQPGEALLLWPHRRHGGTRAAGRG
LKFYWVHFTLASGTEDDLPDPLQVLQHTRVARPDQMSALFRQLVNDQELFGARSSTLAPIIALMLCELARSENAVAQQAG
AASALAAKAEMVIQNKFAGDISASTIADELHCNPDYLGRVFRRAYGRTLTEALHARRVRHAAMLLAETGKSIGEIGQLCG
FSDPAYFRRIFSRYQEMTPGAWRALHTRTHMNHT

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786251, Length=240, Percent_Identity=25.8333333333333, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1790391, Length=152, Percent_Identity=24.3421052631579, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 30717; Mature: 30717

Theoretical pI: Translated: 9.17; Mature: 9.17

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLRVSVQSSIRAQNGGLFVSKSADWVHPQRRLESYELVFVRQGVLHLREDDTEFEVQPG
CEEEEEHHHHHHHCCCCEEEECCCCCCCHHHHHCHHHHHHHHHHHHHHCCCCCCEEECCC
EALLLWPHRRHGGTRAAGRGLKFYWVHFTLASGTEDDLPDPLQVLQHTRVARPDQMSALF
CEEEEECCCCCCCCHHHCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHCCCCHHHHHHH
RQLVNDQELFGARSSTLAPIIALMLCELARSENAVAQQAGAASALAAKAEMVIQNKFAGD
HHHCCHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHCHHHHHHHHHHHHHHHHCCCC
ISASTIADELHCNPDYLGRVFRRAYGRTLTEALHARRVRHAAMLLAETGKSIGEIGQLCG
CHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHC
FSDPAYFRRIFSRYQEMTPGAWRALHTRTHMNHT
CCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCC
>Mature Secondary Structure
MQLRVSVQSSIRAQNGGLFVSKSADWVHPQRRLESYELVFVRQGVLHLREDDTEFEVQPG
CEEEEEHHHHHHHCCCCEEEECCCCCCCHHHHHCHHHHHHHHHHHHHHCCCCCCEEECCC
EALLLWPHRRHGGTRAAGRGLKFYWVHFTLASGTEDDLPDPLQVLQHTRVARPDQMSALF
CEEEEECCCCCCCCHHHCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHCCCCHHHHHHH
RQLVNDQELFGARSSTLAPIIALMLCELARSENAVAQQAGAASALAAKAEMVIQNKFAGD
HHHCCHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHCHHHHHHHHHHHHHHHHCCCC
ISASTIADELHCNPDYLGRVFRRAYGRTLTEALHARRVRHAAMLLAETGKSIGEIGQLCG
CHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHC
FSDPAYFRRIFSRYQEMTPGAWRALHTRTHMNHT
CCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9353932; 9384377; 8407808 [H]