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The map label for this gene is yicJ [H]

Identifier: 238023986

GI number: 238023986

Start: 647228

End: 648634

Strand: Reverse

Name: yicJ [H]

Synonym: bglu_2g05400

Alternate gene names: 238023986

Gene position: 648634-647228 (Counterclockwise)

Preceding gene: 238023988

Following gene: 238023985

Centisome position: 22.94

GC content: 62.97

Gene sequence:

>1407_bases
ATGGCGGACGGCACGACAATAGCGGGAGAAGACGGCAGCCTCGGAGCCGGCGCGCCGGCGCTGGCCGGGCTGTCCGCCAG
CGAGAAGTTCGGCTACGGACTCGGCGATGCGGGCGGCACCGTCATCACGGCACTGATCGGTAATTTCCTGACGTTTTTCT
ACACCGACGTGTTTGGCCTCGCACCCGGCATCGTCGGCACGATCTTCGTCGTGCTGCGCGTTTTCGACGCCGCCGCCGAT
CCCTTGATGGGCGCGCTGGCCGATCGCACGCGCAGCCGATGGGGACGGTTCCGACCGTGGCAGCTCTGGGGCGCGTTTCC
CATCGGCATCGTCGCGATCGCGACTTTCGCCTCGCCCTCGCTGTCTTACGAATGGCGAATCGTCTATGCATTCGCGACCT
ACCTGTTGCTCTCGGTTTGCTACACGGCGGTGAATGTGCCGTATTGCGCCATGATCAACGCGATGACGACCGACCACAAA
GAAGTCATGTCCTGCCAGACGTATCGTTTTGCGCTGTGCGGCCTGACGGGCTTTCTGGTATCGACGGGCGTGCCTTATTT
CGTGAAGCAGTTCGGTGGCGGCGACGCCGCGCGCGGCTATCGCCTGACCATCGCCGTGGCGGCTCTCGCGGTCGTGGTCA
TGCTGTTGTGGTGCTTTGCGGCAGTGCGCGAGCGCGTCCCGCTGCGCACGGAGGGGCAAGCCAGGCTCGGCGAGCAGTTC
CGCAGCATGCGCCGCAACGACCAGCTGATCGTCATGCTCGTGATGTCGTTCCTGCTCATCACGATCTTCAATACGAAAGG
CGGCGCGTACATGTACTTCATCACCTACGTGCTGCACGGCGATACCGCGTACACATCGCTGTTTTTCGGCGTGGCGACCT
TTTCGGCGATCCTCGGGACACTGATCGTCAACCAGTTGAGCAAGCGCTTCGACGCCAAGCACCTCTACTTCCACACGAAC
GTTTTTCTCGGCCTGATGTCGATCGCGCTCTACTGGGTGCCGGCCTCCGCTCAGACGCTCTGGCTCGTGCTGATTCTGGT
GTATTGCACGGTGCTTGGCTTCACGCTGCCGCTGCACTTCGCGATGATGGCCTACGCTGACGACTACGGCGACTGGAAAA
CCGGCATACGTGCGTCCGGCATGAATTTCGCGTTCAACCTGCTGTTCATCAAGCTCGCCTGGGCGGCGAGCGCCGGCATC
ATCACCTGCGTGCTGGTGGCCGTCGCTTACAAGGCGGGCCTGGAGAACCAGACAAGCGCCTCCGTACACGGCATCACGCT
GCTCGCGACGGCGATCCCCGGCGTGATTCATTTGCTGCTGGCGGCCGTCTCGCGCAAATTCTGCATCGACACCGCCCTGC
TCGCCCGCATTCAGGCCGATCTCAGGCTACGGCGCGCGGGCCATTGA

Upstream 100 bases:

>100_bases
GCGTCCAGTCCGCCCAGGTAGGATTGCCATCGGCAATCCAAGCCGGGCGCGCGAGACGACGCGCGACCCCATTCAAAACA
AGCATGGAGTGGAGACGAAT

Downstream 100 bases:

>100_bases
GGGCCGCGCCACCAAGGTCCCGGCCCTGCCGACATCCATCCACGACCGTCGAGAAACCCGCTCATGAATCAGCTCAATCA
TGCCGCATCGCGGCAGGTCA

Product: Na+ melibiose symporter-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 468; Mature: 467

Protein sequence:

>468_residues
MADGTTIAGEDGSLGAGAPALAGLSASEKFGYGLGDAGGTVITALIGNFLTFFYTDVFGLAPGIVGTIFVVLRVFDAAAD
PLMGALADRTRSRWGRFRPWQLWGAFPIGIVAIATFASPSLSYEWRIVYAFATYLLLSVCYTAVNVPYCAMINAMTTDHK
EVMSCQTYRFALCGLTGFLVSTGVPYFVKQFGGGDAARGYRLTIAVAALAVVVMLLWCFAAVRERVPLRTEGQARLGEQF
RSMRRNDQLIVMLVMSFLLITIFNTKGGAYMYFITYVLHGDTAYTSLFFGVATFSAILGTLIVNQLSKRFDAKHLYFHTN
VFLGLMSIALYWVPASAQTLWLVLILVYCTVLGFTLPLHFAMMAYADDYGDWKTGIRASGMNFAFNLLFIKLAWAASAGI
ITCVLVAVAYKAGLENQTSASVHGITLLATAIPGVIHLLLAAVSRKFCIDTALLARIQADLRLRRAGH

Sequences:

>Translated_468_residues
MADGTTIAGEDGSLGAGAPALAGLSASEKFGYGLGDAGGTVITALIGNFLTFFYTDVFGLAPGIVGTIFVVLRVFDAAAD
PLMGALADRTRSRWGRFRPWQLWGAFPIGIVAIATFASPSLSYEWRIVYAFATYLLLSVCYTAVNVPYCAMINAMTTDHK
EVMSCQTYRFALCGLTGFLVSTGVPYFVKQFGGGDAARGYRLTIAVAALAVVVMLLWCFAAVRERVPLRTEGQARLGEQF
RSMRRNDQLIVMLVMSFLLITIFNTKGGAYMYFITYVLHGDTAYTSLFFGVATFSAILGTLIVNQLSKRFDAKHLYFHTN
VFLGLMSIALYWVPASAQTLWLVLILVYCTVLGFTLPLHFAMMAYADDYGDWKTGIRASGMNFAFNLLFIKLAWAASAGI
ITCVLVAVAYKAGLENQTSASVHGITLLATAIPGVIHLLLAAVSRKFCIDTALLARIQADLRLRRAGH
>Mature_467_residues
ADGTTIAGEDGSLGAGAPALAGLSASEKFGYGLGDAGGTVITALIGNFLTFFYTDVFGLAPGIVGTIFVVLRVFDAAADP
LMGALADRTRSRWGRFRPWQLWGAFPIGIVAIATFASPSLSYEWRIVYAFATYLLLSVCYTAVNVPYCAMINAMTTDHKE
VMSCQTYRFALCGLTGFLVSTGVPYFVKQFGGGDAARGYRLTIAVAALAVVVMLLWCFAAVRERVPLRTEGQARLGEQFR
SMRRNDQLIVMLVMSFLLITIFNTKGGAYMYFITYVLHGDTAYTSLFFGVATFSAILGTLIVNQLSKRFDAKHLYFHTNV
FLGLMSIALYWVPASAQTLWLVLILVYCTVLGFTLPLHFAMMAYADDYGDWKTGIRASGMNFAFNLLFIKLAWAASAGII
TCVLVAVAYKAGLENQTSASVHGITLLATAIPGVIHLLLAAVSRKFCIDTALLARIQADLRLRRAGH

Specific function: Unknown

COG id: COG2211

COG function: function code G; Na+/melibiose symporter and related transporters

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:galactoside symporter (TC 2.A.2) family [H]

Homologues:

Organism=Escherichia coli, GI87082306, Length=424, Percent_Identity=35.1415094339623, Blast_Score=258, Evalue=6e-70,
Organism=Escherichia coli, GI1786466, Length=418, Percent_Identity=34.688995215311, Blast_Score=239, Evalue=2e-64,
Organism=Escherichia coli, GI1790561, Length=445, Percent_Identity=26.2921348314607, Blast_Score=143, Evalue=2e-35,
Organism=Escherichia coli, GI1787902, Length=406, Percent_Identity=26.8472906403941, Blast_Score=129, Evalue=6e-31,
Organism=Escherichia coli, GI48994989, Length=458, Percent_Identity=25.9825327510917, Blast_Score=128, Evalue=8e-31,
Organism=Escherichia coli, GI145693206, Length=456, Percent_Identity=23.9035087719298, Blast_Score=124, Evalue=2e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016196
- InterPro:   IPR001927
- InterPro:   IPR018043 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 50819; Mature: 50688

Theoretical pI: Translated: 9.08; Mature: 9.08

Prosite motif: PS00872 NA_GALACTOSIDE_SYMP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
ADGTTIAGEDGSLGAGAPALAGLSASEKFGYGLGDAGGTVITALIGNFLTFFYTDVFGL
CCCCEECCCCCCCCCCCHHHHCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH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HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7686882; 9278503 [H]