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The map label for this gene is ybiU [H]

Identifier: 238023957

GI number: 238023957

Start: 606664

End: 607917

Strand: Direct

Name: ybiU [H]

Synonym: bglu_2g05070

Alternate gene names: 238023957

Gene position: 606664-607917 (Clockwise)

Preceding gene: 238023953

Following gene: 238023959

Centisome position: 21.46

GC content: 72.57

Gene sequence:

>1254_bases
ATGGCCCTGCACATCGACGACATGCCGGCCGCCATCCGCGCGGCCAAGCGCGAGCTGCGCGCGGCGCTGCCGAATTATCG
CGAGGTATTCACCGAGGTCGAGGCGGCGATGCGCGCGGCGGCGCGCGAGATCGTCGCGCTGCGCGAACGCGGCGCCGCCG
TGATTCCGGAGCTCCGCTTCGAGGACATCGCCTCCGGGCGCGTCGAGGCCGGGCCGATCGCGCTCGTGAAGCAGCGCGGT
GCCTGCGTGATCCGCGGCGTGTTCGCGCGCGAGCTGGCCGAACGATGGGATCGCGAGATCGCCGATTACGTCGCGCGCAA
CGAGCTGGACGCGCGGCTCGCGCACCGCGCCGAGGACCGCTATTTCGGCCAGCTCGCGTCGAGCCGGCCGCAGATCTACG
GCGTCTACTGGTCGGCGCCGCAGGTGGCCGCGCGCCAGTCGCCGGCGCTCACCCAGGCGCGCGTGTTCCTGAACCGGCTG
TGGCGCTCGACCGGCGAGGGCGGCGAGCGCCACTTCGATCCCGAGCGGGTGCCGGCCTACGCGGACCGGCTGCGCCGGCG
CCCGCCCGGCTCCGAGGCGCTGGGGCTGTCCGCGCATTGCGACGGCGGCTCGGTGGAGCGCTGGATCGAGGCGAATTTCC
GCCGCGTCTACCGGCACGTGTTCGCCGGCAACTGGCGCGACTACGATCCGTTCGACGCGGCCTGGCGCACCGAGGTGGAG
GAGATCGCCTCGCCGGCCGTCTGCTCGATGTTCCGCACCTTCCAGGGCTGGACCGCGCTGACGCCGCAAGGCCCCGGCGA
CGGCACGCTGCAACTGGTGCCGATCGCCAACGCGATGGCGTACATCCTGCTGCGCGCGCTGCAGGACGACGTGGCCGAGG
ACGACCTGTGCGGTGCGATGGCGGGCCGCGCGCTGTCGATCCGGCCCGAGTACCACGCGCCGCTGTTCGACGCGCTCTCG
TCGATTCCGCCGATGCAGCCGGGCGACACCGTGTTCTGGCACGGCGACGTGATTCACGCGGTCGAGGACGAGCACCGCGG
CAGCGGCGACAGCAACGTGATGTATATCGCAGCGGCGCCGGGCTGCGCGAAGAACGACGCCTATCTGCGGCGGCAGTGGC
CGCATTTCGTCGACGGCCGCAGCCCGCCCGATTTTCCGGCCGACCACTTCGAGACCGATTTCGTCGGCCGTGCGACGGCC
GACGACCTGACGCCGGCCGGGCGCGAGCAGATGGGCGCGCCGCTGTCCCGCTGA

Upstream 100 bases:

>100_bases
TCATGGCCGTATCCATCGTGACAATGGCCGGATCGTATCACTGGTGCGGGCCGCGCCGGCATACGATGCGCAGCACCCAA
CACCATTCGGAGACGACATC

Downstream 100 bases:

>100_bases
ACGCGCGCCGGCCGGGCACGCGCCGGCCTCGGGCGGCCGGCGCGGCCCGCGTTCGTCAGAAGCGCTGGCGCAGGCCGATG
CTGACGAGGGTCTGCGAGCG

Product: dioxygenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 417; Mature: 416

Protein sequence:

>417_residues
MALHIDDMPAAIRAAKRELRAALPNYREVFTEVEAAMRAAAREIVALRERGAAVIPELRFEDIASGRVEAGPIALVKQRG
ACVIRGVFARELAERWDREIADYVARNELDARLAHRAEDRYFGQLASSRPQIYGVYWSAPQVAARQSPALTQARVFLNRL
WRSTGEGGERHFDPERVPAYADRLRRRPPGSEALGLSAHCDGGSVERWIEANFRRVYRHVFAGNWRDYDPFDAAWRTEVE
EIASPAVCSMFRTFQGWTALTPQGPGDGTLQLVPIANAMAYILLRALQDDVAEDDLCGAMAGRALSIRPEYHAPLFDALS
SIPPMQPGDTVFWHGDVIHAVEDEHRGSGDSNVMYIAAAPGCAKNDAYLRRQWPHFVDGRSPPDFPADHFETDFVGRATA
DDLTPAGREQMGAPLSR

Sequences:

>Translated_417_residues
MALHIDDMPAAIRAAKRELRAALPNYREVFTEVEAAMRAAAREIVALRERGAAVIPELRFEDIASGRVEAGPIALVKQRG
ACVIRGVFARELAERWDREIADYVARNELDARLAHRAEDRYFGQLASSRPQIYGVYWSAPQVAARQSPALTQARVFLNRL
WRSTGEGGERHFDPERVPAYADRLRRRPPGSEALGLSAHCDGGSVERWIEANFRRVYRHVFAGNWRDYDPFDAAWRTEVE
EIASPAVCSMFRTFQGWTALTPQGPGDGTLQLVPIANAMAYILLRALQDDVAEDDLCGAMAGRALSIRPEYHAPLFDALS
SIPPMQPGDTVFWHGDVIHAVEDEHRGSGDSNVMYIAAAPGCAKNDAYLRRQWPHFVDGRSPPDFPADHFETDFVGRATA
DDLTPAGREQMGAPLSR
>Mature_416_residues
ALHIDDMPAAIRAAKRELRAALPNYREVFTEVEAAMRAAAREIVALRERGAAVIPELRFEDIASGRVEAGPIALVKQRGA
CVIRGVFARELAERWDREIADYVARNELDARLAHRAEDRYFGQLASSRPQIYGVYWSAPQVAARQSPALTQARVFLNRLW
RSTGEGGERHFDPERVPAYADRLRRRPPGSEALGLSAHCDGGSVERWIEANFRRVYRHVFAGNWRDYDPFDAAWRTEVEE
IASPAVCSMFRTFQGWTALTPQGPGDGTLQLVPIANAMAYILLRALQDDVAEDDLCGAMAGRALSIRPEYHAPLFDALSS
IPPMQPGDTVFWHGDVIHAVEDEHRGSGDSNVMYIAAAPGCAKNDAYLRRQWPHFVDGRSPPDFPADHFETDFVGRATAD
DLTPAGREQMGAPLSR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787042, Length=408, Percent_Identity=46.078431372549, Blast_Score=356, Evalue=1e-99,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010856 [H]

Pfam domain/function: PF07350 DUF1479 [H]

EC number: NA

Molecular weight: Translated: 46404; Mature: 46272

Theoretical pI: Translated: 5.99; Mature: 5.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALHIDDMPAAIRAAKRELRAALPNYREVFTEVEAAMRAAAREIVALRERGAAVIPELRF
CEEECCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCHH
EDIASGRVEAGPIALVKQRGACVIRGVFARELAERWDREIADYVARNELDARLAHRAEDR
HHHHCCCCCCCCCHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YFGQLASSRPQIYGVYWSAPQVAARQSPALTQARVFLNRLWRSTGEGGERHFDPERVPAY
HHHHHHCCCCCEEEEEECCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHH
ADRLRRRPPGSEALGLSAHCDGGSVERWIEANFRRVYRHVFAGNWRDYDPFDAAWRTEVE
HHHHHCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
EIASPAVCSMFRTFQGWTALTPQGPGDGTLQLVPIANAMAYILLRALQDDVAEDDLCGAM
HHCCHHHHHHHHHHCCCEECCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCHHHHHHH
AGRALSIRPEYHAPLFDALSSIPPMQPGDTVFWHGDVIHAVEDEHRGSGDSNVMYIAAAP
HCCEEEECCCCCCCHHHHHHCCCCCCCCCEEEECCCEEEHHHHHHCCCCCCCEEEEEECC
GCAKNDAYLRRQWPHFVDGRSPPDFPADHFETDFVGRATADDLTPAGREQMGAPLSR
CCCCCCHHHHHCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCC
>Mature Secondary Structure 
ALHIDDMPAAIRAAKRELRAALPNYREVFTEVEAAMRAAAREIVALRERGAAVIPELRF
EEECCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCHH
EDIASGRVEAGPIALVKQRGACVIRGVFARELAERWDREIADYVARNELDARLAHRAEDR
HHHHCCCCCCCCCHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YFGQLASSRPQIYGVYWSAPQVAARQSPALTQARVFLNRLWRSTGEGGERHFDPERVPAY
HHHHHHCCCCCEEEEEECCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHH
ADRLRRRPPGSEALGLSAHCDGGSVERWIEANFRRVYRHVFAGNWRDYDPFDAAWRTEVE
HHHHHCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
EIASPAVCSMFRTFQGWTALTPQGPGDGTLQLVPIANAMAYILLRALQDDVAEDDLCGAM
HHCCHHHHHHHHHHCCCEECCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCHHHHHHH
AGRALSIRPEYHAPLFDALSSIPPMQPGDTVFWHGDVIHAVEDEHRGSGDSNVMYIAAAP
HCCEEEECCCCCCCHHHHHHCCCCCCCCCEEEECCCEEEHHHHHHCCCCCCCEEEEEECC
GCAKNDAYLRRQWPHFVDGRSPPDFPADHFETDFVGRATADDLTPAGREQMGAPLSR
CCCCCCHHHHHCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]