| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
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The map label for this gene is 238023936
Identifier: 238023936
GI number: 238023936
Start: 581896
End: 582867
Strand: Reverse
Name: 238023936
Synonym: bglu_2g04850
Alternate gene names: NA
Gene position: 582867-581896 (Counterclockwise)
Preceding gene: 238023937
Following gene: 238023932
Centisome position: 20.62
GC content: 72.53
Gene sequence:
>972_bases ATGAAAGTCCTGATCACCGGCGGCGCCGGCTTCCTCGGCCGCCGCCTCGCCACCCGGCTGCTGGCGCGCGGTGAACTCGC CGGCCCGGGCGGCAGGCCCGAGCCCATCGACGAACTGCTGCTGCTCGACGTGGCGCAGGCCGCCGGCTTCGACGACGCGC GCGTCACCACGCGGGTCGGCGACATCGCCGATCGCACCGTCCTGGAGCGCGCGATCGACACGCGCACCGGCGCGATCTTC CATCTCGCGGCCATCGTCAGCGGCCAGGCCGAGGCCGATTTCGAACTCGGCATGCGCATCAACCTCGATGCGTCGCGCAC GCTGCTGGAGGTGTGCCGTGCGCTCGGCCACCGCCCGCGCGTGGTGTTCACGAGCTCGGTGGCCGTCTATGGCGGCGCGC TGCCGCAAATCGTGCAGGACGACACCGCGCTCAATCCGCAATCGTCGTATGGCACGCAGAAGGCGATCGCCGAACTGCTG CTCTGCGACTACACGCGGCGCGGCTTCGTGGACGGCCGCGTGCTGCGCCTGCCCACCATCAGCGTGCGGCCGGGACGGCC GAACGCGGCGGCCTCGTCGTTCGCGAGCGGTATCATCCGCGAGCCGCTCAACGGCGTCGAATCGGTCTGCCCGGTGCCGC TCGACACGCGGCTCTGGCTGCTCTCGCCGCGCCGCGCGATCGACGCGCTGGTGGCCGGCTGCGAGCTCGACGGCGAGCAA CTCGGCAGCCGCCGCATCGTCAACCTGCCGGGGATCTCGGTCAGCGTCGGCGAGATGATCGACGCGCTGCGCGAGGTGGC CGGCGACGCGCCCGTGGCCAGGATCCGCCACGCGATGGACCCGCGCGTGGCGGCAATCGTCGGCAGCTGGCCGGGCCGCT GGGACGTGTCGCGCGCCGCGTCGCTCGGATTCGTCGGCGACGCGGGGTTCGCCGACGTGATCCGTGCCTATCTCGAGGAC GAGCGCGGCTGA
Upstream 100 bases:
>100_bases CCTCCGACGGCCTCGGCTGGCTGCGCCCGTACCGGTGAGCCGTCGCGCCCTCGCTTCGCGCCGCGTCGCGCGCCTCTGAA CCGACCCACGCACAACGCCC
Downstream 100 bases:
>100_bases TACCGCACCCGCGTGCCGCCGGCATGGAGCGCGCCCAAGCACACCCCTCGCCGCCGGGCCACCGGCGGCGAGCTGATGTC ATGACGCGGCTATACGGCGA
Product: NAD-dependent epimerase/dehydratase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 323; Mature: 323
Protein sequence:
>323_residues MKVLITGGAGFLGRRLATRLLARGELAGPGGRPEPIDELLLLDVAQAAGFDDARVTTRVGDIADRTVLERAIDTRTGAIF HLAAIVSGQAEADFELGMRINLDASRTLLEVCRALGHRPRVVFTSSVAVYGGALPQIVQDDTALNPQSSYGTQKAIAELL LCDYTRRGFVDGRVLRLPTISVRPGRPNAAASSFASGIIREPLNGVESVCPVPLDTRLWLLSPRRAIDALVAGCELDGEQ LGSRRIVNLPGISVSVGEMIDALREVAGDAPVARIRHAMDPRVAAIVGSWPGRWDVSRAASLGFVGDAGFADVIRAYLED ERG
Sequences:
>Translated_323_residues MKVLITGGAGFLGRRLATRLLARGELAGPGGRPEPIDELLLLDVAQAAGFDDARVTTRVGDIADRTVLERAIDTRTGAIF HLAAIVSGQAEADFELGMRINLDASRTLLEVCRALGHRPRVVFTSSVAVYGGALPQIVQDDTALNPQSSYGTQKAIAELL LCDYTRRGFVDGRVLRLPTISVRPGRPNAAASSFASGIIREPLNGVESVCPVPLDTRLWLLSPRRAIDALVAGCELDGEQ LGSRRIVNLPGISVSVGEMIDALREVAGDAPVARIRHAMDPRVAAIVGSWPGRWDVSRAASLGFVGDAGFADVIRAYLED ERG >Mature_323_residues MKVLITGGAGFLGRRLATRLLARGELAGPGGRPEPIDELLLLDVAQAAGFDDARVTTRVGDIADRTVLERAIDTRTGAIF HLAAIVSGQAEADFELGMRINLDASRTLLEVCRALGHRPRVVFTSSVAVYGGALPQIVQDDTALNPQSSYGTQKAIAELL LCDYTRRGFVDGRVLRLPTISVRPGRPNAAASSFASGIIREPLNGVESVCPVPLDTRLWLLSPRRAIDALVAGCELDGEQ LGSRRIVNLPGISVSVGEMIDALREVAGDAPVARIRHAMDPRVAAIVGSWPGRWDVSRAASLGFVGDAGFADVIRAYLED ERG
Specific function: Unknown
COG id: COG0451
COG function: function code MG; Nucleoside-diphosphate-sugar epimerases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Caenorhabditis elegans, GI32566934, Length=308, Percent_Identity=25.974025974026, Blast_Score=86, Evalue=2e-17, Organism=Drosophila melanogaster, GI24667531, Length=301, Percent_Identity=25.2491694352159, Blast_Score=83, Evalue=3e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001509 - InterPro: IPR016040 [H]
Pfam domain/function: PF01370 Epimerase [H]
EC number: NA
Molecular weight: Translated: 34393; Mature: 34393
Theoretical pI: Translated: 6.30; Mature: 6.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKVLITGGAGFLGRRLATRLLARGELAGPGGRPEPIDELLLLDVAQAAGFDDARVTTRVG CEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHH DIADRTVLERAIDTRTGAIFHLAAIVSGQAEADFELGMRINLDASRTLLEVCRALGHRPR HHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCEEECEEEECCHHHHHHHHHHHHCCCCC VVFTSSVAVYGGALPQIVQDDTALNPQSSYGTQKAIAELLLCDYTRRGFVDGRVLRLPTI EEEECCHHHHCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCEE SVRPGRPNAAASSFASGIIREPLNGVESVCPVPLDTRLWLLSPRRAIDALVAGCELDGEQ EECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHCCCCCHHH LGSRRIVNLPGISVSVGEMIDALREVAGDAPVARIRHAMDPRVAAIVGSWPGRWDVSRAA CCCCEEEECCCCEEEHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEECCCCCCCCHHHHH SLGFVGDAGFADVIRAYLEDERG CCCCCCCCCHHHHHHHHHHCCCC >Mature Secondary Structure MKVLITGGAGFLGRRLATRLLARGELAGPGGRPEPIDELLLLDVAQAAGFDDARVTTRVG CEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHH DIADRTVLERAIDTRTGAIFHLAAIVSGQAEADFELGMRINLDASRTLLEVCRALGHRPR HHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCEEECEEEECCHHHHHHHHHHHHCCCCC VVFTSSVAVYGGALPQIVQDDTALNPQSSYGTQKAIAELLLCDYTRRGFVDGRVLRLPTI EEEECCHHHHCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCEE SVRPGRPNAAASSFASGIIREPLNGVESVCPVPLDTRLWLLSPRRAIDALVAGCELDGEQ EECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHCCCCCHHH LGSRRIVNLPGISVSVGEMIDALREVAGDAPVARIRHAMDPRVAAIVGSWPGRWDVSRAA CCCCEEEECCCCEEEHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEECCCCCCCCHHHHH SLGFVGDAGFADVIRAYLEDERG CCCCCCCCCHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]