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The map label for this gene is cph2 [H]

Identifier: 238023901

GI number: 238023901

Start: 532002

End: 533519

Strand: Reverse

Name: cph2 [H]

Synonym: bglu_2g04410

Alternate gene names: 238023901

Gene position: 533519-532002 (Counterclockwise)

Preceding gene: 238023902

Following gene: 238023900

Centisome position: 18.87

GC content: 64.82

Gene sequence:

>1518_bases
ATGTCCGCCTCAACCTCACTAGGTAAGATCGCCGACTGGGCCGGAAGGAATTTTCTCGTCATCGGCGTGCTGGGCACGTT
GATGTCGGTCGCGACATCGGCAATCAGTGTCATGACGCTTTGGGCCGCGCACGACGAAGTCATCACCCATGCTCACGAGA
ACTCACGCAACGTGACGGCAGTGCTGGCCAGCGAAATAGCAAGGACGGTAGAAACCTCGAACATGGCGCTGATGAGCCTG
GCCACGAATCTCAGCAATCCTGCGTTCCGCAACATGGACCCCCGCCTGCGGCACGACCTTCTGTTCGACAGGACCGCCGC
GCAACACATCACCGGGATGGGCGTGACCGATGCCGAAGGCCGGGTGATCGACGGCTGCTGCAGTCCCACGCATCGGTGGG
ATCTGAGCGACCGTGATTACTTCAAGGCGCCGCGCGACAAGCCCGACATCGGGCTTTACGTGTCGGAGCCCTATGAAGCG
CGTTCACGCGGCGGCACGCGCTCGATCGCGCTGTCGCGCCGCATCGACGGAGCCGGCCATGCTTTCAACGGCATCGCGGT
GGTCGCCATCGATCTGGCCTACTTCAGCCAACTCCTCGAGCGTTTGGATGTGGGCGCTCATGGCATCAGCGCCATCGTGC
GCTCCGACGGCATCATTCTCGCGAGAAATCCGCCCGTCAGCGCGAGCCAGATGGCCAGCTTGCGCCGCTCCAACACGTTC
GCGGGGATGACCCAGCACGATTCGGGTTTCTATGTCGCGCGTTCGAGCGTCGACGGCACGATACGGCTCTATACGTACCA
GCGCGTGCCCGGCACCCCGCTGATCGCCGTCGTCGCGCCCGCGCAAAGCGACGTGCTGGCGGGAATCACCCGTATGGCCT
GGAAGGTCGGGGTCTCCGCCGGGACCATCAGCGCGCTGTTCTGTGCGGCGGTCTGGCTGCTCGCCTTCGTACTGCGTGAC
AATCTGAACAAGCAGCGAAAGCTGACCGAACTGAGCCGCACCGACGCGCTGACGGGCCTGCTGAACCGCCGGGCCCTGGA
TGCCGTGCTGGCCGACGAGTGGCAGCGGGTCCAGCGCGGCAATACCTGCATGTCGGTGCTGTTCATCGACGCCGACCATT
TCAAGCAGTACAACGACATCCATGGCCATGCCAAGGGCGACACCGCCCTGCGCTTCCTGGCGGCATGCATCAGCCGGCAT
GTCCGGCGCCATGGCGACATCGCCGCGCGCTACGGCGGCGAAGAATTCGTCGCCGTGCTGGTCAATACCGATACGCATGG
CGCATTGACGGTGTCCGAAGCCATTCGAGAGGATATCGAAAGAAACCGGCTTGCCGATTTTCCCGAACCGATTCCCGCCC
TGACCGTCAGCATAGGCTGCGCCACCGGCCGCCGGGGGAAGCCGGCGTCGGTCGAGGCGCTCTGCCGCCAGGCCGACCTG
GCGCTCTACCAGGCCAAGCGAAGCGGACGAAACCGGGTGGGCGCGGCCCCGGCGGAGGATGGCGAGGCACGCGCCTGA

Upstream 100 bases:

>100_bases
GTCGGGATTGCATATATTAATTTCATGCCGGCTCGGCCGTTAACACCGCCTGCCGCGTCAGTGCCGCGCGTCGATTCGTT
GGCTTTCATCTGAAGAGAGT

Downstream 100 bases:

>100_bases
GCAGACGCACGCGGTCTGCCCGGGCGCGGCGCCCGGGCGTGCCGGCATGCGGCCTCGGCGGGAGGGCGCGCAGCGTCGGG
GAACCGGGGTTAACCGCAAA

Product: diguanylate cyclase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 505; Mature: 504

Protein sequence:

>505_residues
MSASTSLGKIADWAGRNFLVIGVLGTLMSVATSAISVMTLWAAHDEVITHAHENSRNVTAVLASEIARTVETSNMALMSL
ATNLSNPAFRNMDPRLRHDLLFDRTAAQHITGMGVTDAEGRVIDGCCSPTHRWDLSDRDYFKAPRDKPDIGLYVSEPYEA
RSRGGTRSIALSRRIDGAGHAFNGIAVVAIDLAYFSQLLERLDVGAHGISAIVRSDGIILARNPPVSASQMASLRRSNTF
AGMTQHDSGFYVARSSVDGTIRLYTYQRVPGTPLIAVVAPAQSDVLAGITRMAWKVGVSAGTISALFCAAVWLLAFVLRD
NLNKQRKLTELSRTDALTGLLNRRALDAVLADEWQRVQRGNTCMSVLFIDADHFKQYNDIHGHAKGDTALRFLAACISRH
VRRHGDIAARYGGEEFVAVLVNTDTHGALTVSEAIREDIERNRLADFPEPIPALTVSIGCATGRRGKPASVEALCRQADL
ALYQAKRSGRNRVGAAPAEDGEARA

Sequences:

>Translated_505_residues
MSASTSLGKIADWAGRNFLVIGVLGTLMSVATSAISVMTLWAAHDEVITHAHENSRNVTAVLASEIARTVETSNMALMSL
ATNLSNPAFRNMDPRLRHDLLFDRTAAQHITGMGVTDAEGRVIDGCCSPTHRWDLSDRDYFKAPRDKPDIGLYVSEPYEA
RSRGGTRSIALSRRIDGAGHAFNGIAVVAIDLAYFSQLLERLDVGAHGISAIVRSDGIILARNPPVSASQMASLRRSNTF
AGMTQHDSGFYVARSSVDGTIRLYTYQRVPGTPLIAVVAPAQSDVLAGITRMAWKVGVSAGTISALFCAAVWLLAFVLRD
NLNKQRKLTELSRTDALTGLLNRRALDAVLADEWQRVQRGNTCMSVLFIDADHFKQYNDIHGHAKGDTALRFLAACISRH
VRRHGDIAARYGGEEFVAVLVNTDTHGALTVSEAIREDIERNRLADFPEPIPALTVSIGCATGRRGKPASVEALCRQADL
ALYQAKRSGRNRVGAAPAEDGEARA
>Mature_504_residues
SASTSLGKIADWAGRNFLVIGVLGTLMSVATSAISVMTLWAAHDEVITHAHENSRNVTAVLASEIARTVETSNMALMSLA
TNLSNPAFRNMDPRLRHDLLFDRTAAQHITGMGVTDAEGRVIDGCCSPTHRWDLSDRDYFKAPRDKPDIGLYVSEPYEAR
SRGGTRSIALSRRIDGAGHAFNGIAVVAIDLAYFSQLLERLDVGAHGISAIVRSDGIILARNPPVSASQMASLRRSNTFA
GMTQHDSGFYVARSSVDGTIRLYTYQRVPGTPLIAVVAPAQSDVLAGITRMAWKVGVSAGTISALFCAAVWLLAFVLRDN
LNKQRKLTELSRTDALTGLLNRRALDAVLADEWQRVQRGNTCMSVLFIDADHFKQYNDIHGHAKGDTALRFLAACISRHV
RRHGDIAARYGGEEFVAVLVNTDTHGALTVSEAIREDIERNRLADFPEPIPALTVSIGCATGRRGKPASVEALCRQADLA
LYQAKRSGRNRVGAAPAEDGEARA

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI145693134, Length=170, Percent_Identity=41.7647058823529, Blast_Score=106, Evalue=3e-24,
Organism=Escherichia coli, GI87081881, Length=187, Percent_Identity=36.8983957219251, Blast_Score=103, Evalue=3e-23,
Organism=Escherichia coli, GI1786584, Length=175, Percent_Identity=34.8571428571429, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1787262, Length=228, Percent_Identity=31.5789473684211, Blast_Score=95, Evalue=1e-20,
Organism=Escherichia coli, GI87082007, Length=205, Percent_Identity=31.219512195122, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI87081974, Length=158, Percent_Identity=34.1772151898734, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1787802, Length=162, Percent_Identity=32.7160493827161, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1787541, Length=171, Percent_Identity=32.1637426900585, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1787816, Length=185, Percent_Identity=32.4324324324324, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI1788381, Length=194, Percent_Identity=29.3814432989691, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI87081977, Length=157, Percent_Identity=29.9363057324841, Blast_Score=66, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 54687; Mature: 54556

Theoretical pI: Translated: 8.66; Mature: 8.66

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSASTSLGKIADWAGRNFLVIGVLGTLMSVATSAISVMTLWAAHDEVITHAHENSRNVTA
CCCCCCCHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
VLASEIARTVETSNMALMSLATNLSNPAFRNMDPRLRHDLLFDRTAAQHITGMGVTDAEG
HHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
RVIDGCCSPTHRWDLSDRDYFKAPRDKPDIGLYVSEPYEARSRGGTRSIALSRRIDGAGH
CEEECCCCCCCCCCCCCCHHHCCCCCCCCEEEEECCCHHHHHCCCCEEEEEEECCCCCCC
AFNGIAVVAIDLAYFSQLLERLDVGAHGISAIVRSDGIILARNPPVSASQMASLRRSNTF
CCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCC
AGMTQHDSGFYVARSSVDGTIRLYTYQRVPGTPLIAVVAPAQSDVLAGITRMAWKVGVSA
CCCEECCCCEEEEECCCCCEEEEEEEECCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCC
GTISALFCAAVWLLAFVLRDNLNKQRKLTELSRTDALTGLLNRRALDAVLADEWQRVQRG
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
NTCMSVLFIDADHFKQYNDIHGHAKGDTALRFLAACISRHVRRHGDIAARYGGEEFVAVL
CCEEEEEEEEHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCEEEEEE
VNTDTHGALTVSEAIREDIERNRLADFPEPIPALTVSIGCATGRRGKPASVEALCRQADL
EECCCCCCEEHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHH
ALYQAKRSGRNRVGAAPAEDGEARA
HHHHHHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SASTSLGKIADWAGRNFLVIGVLGTLMSVATSAISVMTLWAAHDEVITHAHENSRNVTA
CCCCCCHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
VLASEIARTVETSNMALMSLATNLSNPAFRNMDPRLRHDLLFDRTAAQHITGMGVTDAEG
HHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
RVIDGCCSPTHRWDLSDRDYFKAPRDKPDIGLYVSEPYEARSRGGTRSIALSRRIDGAGH
CEEECCCCCCCCCCCCCCHHHCCCCCCCCEEEEECCCHHHHHCCCCEEEEEEECCCCCCC
AFNGIAVVAIDLAYFSQLLERLDVGAHGISAIVRSDGIILARNPPVSASQMASLRRSNTF
CCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCC
AGMTQHDSGFYVARSSVDGTIRLYTYQRVPGTPLIAVVAPAQSDVLAGITRMAWKVGVSA
CCCEECCCCEEEEECCCCCEEEEEEEECCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCC
GTISALFCAAVWLLAFVLRDNLNKQRKLTELSRTDALTGLLNRRALDAVLADEWQRVQRG
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
NTCMSVLFIDADHFKQYNDIHGHAKGDTALRFLAACISRHVRRHGDIAARYGGEEFVAVL
CCEEEEEEEEHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCEEEEEE
VNTDTHGALTVSEAIREDIERNRLADFPEPIPALTVSIGCATGRRGKPASVEALCRQADL
EECCCCCCEEHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHH
ALYQAKRSGRNRVGAAPAEDGEARA
HHHHHHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]