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The map label for this gene is ydcR [H]

Identifier: 238023862

GI number: 238023862

Start: 479579

End: 480946

Strand: Direct

Name: ydcR [H]

Synonym: bglu_2g04010

Alternate gene names: 238023862

Gene position: 479579-480946 (Clockwise)

Preceding gene: 238023858

Following gene: 238023864

Centisome position: 16.96

GC content: 74.34

Gene sequence:

>1368_bases
ATGGCGGCGTTGCGCGCCCGGATCGCGGGCCGCACGCTCGGGCCGGGCGCGCGCGTGCCGTCGATCCGGGCGATGGCCGA
GAACTGCGGCGTGTCCAAATCCACCGTGGTCGATGCCTACGACCGGCTCGTCGCCGACGGCACGCTGGCCGCGCGGCGCG
GCGCCGGATTCTTCGTGGCGGGCCACGCGCCGCCGTTCGCGCTCGCCGAGGTCGGCCCGCGCCTCGATCGCGAACTCGAT
CCGCTGTGGCTCACGCGCCAGTCGCTCGAAAGCGGCGGCGACGTGCTGAAGCCGGGCTGCGGCTGGCTGCCCGCGTCGTG
GCTGCCCGACGACGGCATGCGCCGGGCCCTGCGCGCGGTCGCGCGCGACGCGCGGGCCGACCTGGCCGACTACGGCGCGC
CGCGCGGCCTGCCGGCCCTGCGCCAGCAACTGGGCTGGCGGCTCGCGCAGCACGGCATCGACGCGCCGCCCGACCAGATC
CTGCTGACCGACGGCGGCACGCATGCGCTCGACCTCGTCTGCCGGCTGCTGCTGGAGCCCGGCGACACCGTGGTGGTCGA
CGATCCCTGCTATTTCAACTTCCAGGCCCTGCTGCGCGCGCACCGCGTGCAACTGGTGGGCGTGCGCTATACGGCGAACG
GGCCGGACCCGGCCGAATTCGCGCGCGTGCTGGCCGAGCACCGGCCGCGCCTGTACGTGACGAACTCGGCGCTCCACAAT
CCGACCGGCGCGGCGCTCGCGCCGGCCGTGGCGCACCGCGTGCTGACGCTGGCCGCCGAGCACGACGTGCTGATCGTGGA
GGACGACATCTTCGCGGACTTCGAAGCCGAGCCGGCGCCACGGCTCGCGGCGTTCGACGGCCTGCAGCGCGTGGTCTCGA
TCGGCAGCTTCTCGAAGACGCTGTCGGCGGCCGTGCGCTGCGGCTACCTGGCCGCGCGGCGCGAGTGGATCGATCCGCTG
ATCGACCTGAAGCTCGCGACGACCTTCGGCAACGGCGGGCTGAACCCGGCGGTGGTCCACCGGCTGCTGGTGGACGGCAG
CTATCGGCGTCATCTCGACGGCCTGCGTGCGCGGCTCGGCGACGCGATGGGCGAGACGCTGCGCCAGCTCGGGGCGGCCG
GGCTCGAGGTGCGGATTCGGCCGCAGGCGGGAATGTTCCTGTGGGCCGAACTGCCGGCGGGACTCGACGCGGCCTTGGTG
GCGCGCCATGCGCTCGACGACGGCGTGGTGCTCGCGCCCGGCAACGTGTTCAGCGTCTCGCGCACGGCCACGCGCCATCT
GCGGTTCAACGTCTCGCAGAGCAACCGGCCGGCCGTCTACGCGGCGCTGCGGCGCGCGATGGAGCGGGCCGCAGGCCGAA
CACCGTGA

Upstream 100 bases:

>100_bases
TACTGATCATGGAGCCGTACAGATGGCGGTGAATCGCGGCGAGATGCCGGTGGGGGCGCCCGCGCCGGCGCCGGCCGGCG
GGACGCGCGTCGCGCACGTG

Downstream 100 bases:

>100_bases
CCGGCCCATCGCAGGCGCGCCGGCCATCGTCCGCATGCGGCGGTTTCGATGCGCGGCGCGATCGCCGGCCGCCGTGACTG
CGGCATCGAGGTCGTTTCGC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 455; Mature: 454

Protein sequence:

>455_residues
MAALRARIAGRTLGPGARVPSIRAMAENCGVSKSTVVDAYDRLVADGTLAARRGAGFFVAGHAPPFALAEVGPRLDRELD
PLWLTRQSLESGGDVLKPGCGWLPASWLPDDGMRRALRAVARDARADLADYGAPRGLPALRQQLGWRLAQHGIDAPPDQI
LLTDGGTHALDLVCRLLLEPGDTVVVDDPCYFNFQALLRAHRVQLVGVRYTANGPDPAEFARVLAEHRPRLYVTNSALHN
PTGAALAPAVAHRVLTLAAEHDVLIVEDDIFADFEAEPAPRLAAFDGLQRVVSIGSFSKTLSAAVRCGYLAARREWIDPL
IDLKLATTFGNGGLNPAVVHRLLVDGSYRRHLDGLRARLGDAMGETLRQLGAAGLEVRIRPQAGMFLWAELPAGLDAALV
ARHALDDGVVLAPGNVFSVSRTATRHLRFNVSQSNRPAVYAALRRAMERAAGRTP

Sequences:

>Translated_455_residues
MAALRARIAGRTLGPGARVPSIRAMAENCGVSKSTVVDAYDRLVADGTLAARRGAGFFVAGHAPPFALAEVGPRLDRELD
PLWLTRQSLESGGDVLKPGCGWLPASWLPDDGMRRALRAVARDARADLADYGAPRGLPALRQQLGWRLAQHGIDAPPDQI
LLTDGGTHALDLVCRLLLEPGDTVVVDDPCYFNFQALLRAHRVQLVGVRYTANGPDPAEFARVLAEHRPRLYVTNSALHN
PTGAALAPAVAHRVLTLAAEHDVLIVEDDIFADFEAEPAPRLAAFDGLQRVVSIGSFSKTLSAAVRCGYLAARREWIDPL
IDLKLATTFGNGGLNPAVVHRLLVDGSYRRHLDGLRARLGDAMGETLRQLGAAGLEVRIRPQAGMFLWAELPAGLDAALV
ARHALDDGVVLAPGNVFSVSRTATRHLRFNVSQSNRPAVYAALRRAMERAAGRTP
>Mature_454_residues
AALRARIAGRTLGPGARVPSIRAMAENCGVSKSTVVDAYDRLVADGTLAARRGAGFFVAGHAPPFALAEVGPRLDRELDP
LWLTRQSLESGGDVLKPGCGWLPASWLPDDGMRRALRAVARDARADLADYGAPRGLPALRQQLGWRLAQHGIDAPPDQIL
LTDGGTHALDLVCRLLLEPGDTVVVDDPCYFNFQALLRAHRVQLVGVRYTANGPDPAEFARVLAEHRPRLYVTNSALHNP
TGAALAPAVAHRVLTLAAEHDVLIVEDDIFADFEAEPAPRLAAFDGLQRVVSIGSFSKTLSAAVRCGYLAARREWIDPLI
DLKLATTFGNGGLNPAVVHRLLVDGSYRRHLDGLRARLGDAMGETLRQLGAAGLEVRIRPQAGMFLWAELPAGLDAALVA
RHALDDGVVLAPGNVFSVSRTATRHLRFNVSQSNRPAVYAALRRAMERAAGRTP

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=361, Percent_Identity=26.3157894736842, Blast_Score=99, Evalue=6e-21,
Organism=Homo sapiens, GI33469970, Length=361, Percent_Identity=26.3157894736842, Blast_Score=99, Evalue=6e-21,
Organism=Escherichia coli, GI1787710, Length=443, Percent_Identity=31.6027088036117, Blast_Score=160, Evalue=2e-40,
Organism=Escherichia coli, GI1790797, Length=460, Percent_Identity=27.6086956521739, Blast_Score=142, Evalue=5e-35,
Organism=Escherichia coli, GI1788722, Length=346, Percent_Identity=26.0115606936416, Blast_Score=78, Evalue=1e-15,
Organism=Saccharomyces cerevisiae, GI6321236, Length=313, Percent_Identity=23.3226837060703, Blast_Score=70, Evalue=7e-13,
Organism=Drosophila melanogaster, GI21356535, Length=386, Percent_Identity=22.279792746114, Blast_Score=80, Evalue=4e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 48892; Mature: 48760

Theoretical pI: Translated: 8.96; Mature: 8.96

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAALRARIAGRTLGPGARVPSIRAMAENCGVSKSTVVDAYDRLVADGTLAARRGAGFFVA
CCCHHHHHCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHCCCCEEEE
GHAPPFALAEVGPRLDRELDPLWLTRQSLESGGDVLKPGCGWLPASWLPDDGMRRALRAV
CCCCCHHHHHCCCHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
ARDARADLADYGAPRGLPALRQQLGWRLAQHGIDAPPDQILLTDGGTHALDLVCRLLLEP
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHCC
GDTVVVDDPCYFNFQALLRAHRVQLVGVRYTANGPDPAEFARVLAEHRPRLYVTNSALHN
CCEEEECCCCCCCHHHHHHHHCEEEEEEEEECCCCCHHHHHHHHHHCCCEEEEECCCCCC
PTGAALAPAVAHRVLTLAAEHDVLIVEDDIFADFEAEPAPRLAAFDGLQRVVSIGSFSKT
CCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
LSAAVRCGYLAARREWIDPLIDLKLATTFGNGGLNPAVVHRLLVDGSYRRHLDGLRARLG
HHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHH
DAMGETLRQLGAAGLEVRIRPQAGMFLWAELPAGLDAALVARHALDDGVVLAPGNVFSVS
HHHHHHHHHHCCCCCEEEEECCCCEEEEEECCCCCHHHHHHHHHCCCCEEECCCCEEEEH
RTATRHLRFNVSQSNRPAVYAALRRAMERAAGRTP
HHHEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
AALRARIAGRTLGPGARVPSIRAMAENCGVSKSTVVDAYDRLVADGTLAARRGAGFFVA
CCHHHHHCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHCCCCEEEE
GHAPPFALAEVGPRLDRELDPLWLTRQSLESGGDVLKPGCGWLPASWLPDDGMRRALRAV
CCCCCHHHHHCCCHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
ARDARADLADYGAPRGLPALRQQLGWRLAQHGIDAPPDQILLTDGGTHALDLVCRLLLEP
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHCC
GDTVVVDDPCYFNFQALLRAHRVQLVGVRYTANGPDPAEFARVLAEHRPRLYVTNSALHN
CCEEEECCCCCCCHHHHHHHHCEEEEEEEEECCCCCHHHHHHHHHHCCCEEEEECCCCCC
PTGAALAPAVAHRVLTLAAEHDVLIVEDDIFADFEAEPAPRLAAFDGLQRVVSIGSFSKT
CCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
LSAAVRCGYLAARREWIDPLIDLKLATTFGNGGLNPAVVHRLLVDGSYRRHLDGLRARLG
HHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHH
DAMGETLRQLGAAGLEVRIRPQAGMFLWAELPAGLDAALVARHALDDGVVLAPGNVFSVS
HHHHHHHHHHCCCCCEEEEECCCCEEEEEECCCCCHHHHHHHHHCCCCEEECCCCEEEEH
RTATRHLRFNVSQSNRPAVYAALRRAMERAAGRTP
HHHEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]